Wall clock time and date at job start Mon Mar 30 2020 04:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 115.55885 * 2 1 4 4 C 1.52991 * 117.49959 * 214.31433 * 2 1 3 5 5 C 1.52991 * 117.49989 * 145.69031 * 2 1 3 6 6 C 1.52997 * 117.50132 * 215.00159 * 5 2 1 7 7 C 1.50705 * 117.50043 * 0.02562 * 5 2 1 8 8 N 1.29950 * 126.28161 * 0.02562 * 7 5 2 9 9 O 1.21301 * 110.24593 * 179.68224 * 8 7 5 10 10 C 1.33647 * 109.81105 * 0.46996 * 9 8 7 11 11 C 1.50703 * 126.55005 * 179.79997 * 10 9 8 12 12 C 1.53000 * 109.46912 * 269.68989 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99987 * 12 11 10 14 14 O 1.42905 * 109.46848 * 294.99765 * 12 11 10 15 15 C 1.50700 * 109.46738 * 175.00201 * 12 11 10 16 16 H 1.07994 * 120.00251 * 359.97438 * 15 12 11 17 17 C 1.37882 * 119.99770 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99961 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99950 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47347 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46977 * 120.00149 * 19 17 15 22 22 H 1.48494 * 109.47291 * 240.00028 * 19 17 15 23 23 N 1.31122 * 106.89765 * 359.53802 * 10 9 8 24 24 H 1.08994 * 109.47137 * 274.31027 * 1 2 3 25 25 H 1.09005 * 109.47076 * 34.30967 * 1 2 3 26 26 H 1.08997 * 109.47063 * 154.30865 * 1 2 3 27 27 H 1.08999 * 109.46970 * 205.69048 * 3 2 1 28 28 H 1.08995 * 109.47467 * 325.69324 * 3 2 1 29 29 H 1.09000 * 109.47032 * 85.68940 * 3 2 1 30 30 H 1.09000 * 117.50082 * 145.01768 * 4 2 1 31 31 H 1.08999 * 117.50025 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47534 * 180.08594 * 6 5 2 33 33 H 1.09003 * 109.47452 * 300.09061 * 6 5 2 34 34 H 1.09001 * 109.47051 * 60.08599 * 6 5 2 35 35 H 1.09002 * 109.47152 * 149.68761 * 11 10 9 36 36 H 1.09001 * 109.46980 * 29.68861 * 11 10 9 37 37 H 0.96702 * 113.99974 * 300.00156 * 14 12 11 38 38 H 0.97006 * 119.99857 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7649 6 6 3.5487 -0.7758 1.4718 7 6 1.3721 -2.1410 1.4603 8 7 0.0729 -2.1655 1.4758 9 8 -0.3213 -3.1168 2.1170 10 6 0.7206 -3.8046 2.5941 11 6 0.6620 -5.0487 3.4425 12 6 0.6411 -4.6570 4.9214 13 1 -0.1836 -3.9679 5.1030 14 8 1.8755 -4.0236 5.2638 15 6 0.4590 -5.8920 5.7655 16 1 0.3670 -6.8594 5.2944 17 6 0.4099 -5.7869 7.1394 18 7 0.5214 -4.6087 7.7132 19 14 0.1835 -7.3176 8.1858 20 1 0.0838 -8.5091 7.3051 21 1 1.3468 -7.4715 9.0960 22 1 -1.0593 -7.1893 8.9884 23 7 1.8035 -3.1932 2.1782 24 1 -0.3633 0.0772 1.0247 25 1 -0.3633 0.8489 -0.5793 26 1 -0.3633 -0.9260 -0.4455 27 1 3.1824 1.3085 -0.4455 28 1 1.5812 2.0744 -0.5792 29 1 2.2772 1.7414 1.0248 30 1 3.1715 -0.8750 -1.2683 31 1 1.6113 -1.8586 -1.2680 32 1 3.9373 -1.6637 1.9705 33 1 4.2747 -0.4237 0.7388 34 1 3.3692 0.0061 2.2097 35 1 1.5376 -5.6664 3.2426 36 1 -0.2410 -5.6100 3.2024 37 1 2.6543 -4.5802 5.1271 38 1 0.4872 -4.5348 8.6798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702179915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:09 Heat of formation + Delta-G solvation = 31.481367 kcal Electronic energy + Delta-G solvation = -20440.159772 eV Core-core repulsion = 17286.706794 eV Total energy + Delta-G solvation = -3153.452978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.02140 -39.26082 -36.32372 -34.94544 -32.51101 -32.17552 -30.58979 -29.42971 -28.05323 -26.95282 -25.75729 -24.17233 -22.52852 -21.17846 -20.45589 -18.44612 -17.55188 -17.10219 -16.48427 -15.40584 -14.75629 -14.65234 -14.33025 -14.26811 -14.01479 -13.37266 -13.23065 -12.84806 -12.64968 -12.61255 -12.19117 -12.09776 -11.89931 -11.67208 -11.37798 -11.33317 -11.09724 -11.07336 -10.91533 -10.80437 -10.47445 -10.24870 -10.07590 -9.64024 -9.38278 -9.02894 -8.67407 -8.26087 -6.09880 -4.30259 1.67701 2.65993 3.23470 3.31729 3.34247 3.42565 3.59537 3.84300 4.32388 4.39027 4.54619 4.72249 4.84654 4.98566 5.18042 5.44742 5.50961 5.55584 5.62179 5.74226 5.78830 5.80444 5.82250 5.86827 5.91242 6.00846 6.03965 6.09291 6.17155 6.29161 6.35459 6.41485 6.52879 6.62383 7.52183 7.72882 7.99803 8.69959 8.72315 9.29465 9.47631 10.94470 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040941 B = 0.004130 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.741004 B = 6777.313358 C = 6957.896587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C -0.113 4.113 4 C -0.151 4.151 5 C -0.038 4.038 6 C -0.107 4.107 7 C 0.202 3.798 8 N -0.393 5.393 9 O 0.060 5.940 10 C 0.215 3.785 11 C -0.062 4.062 12 C 0.237 3.763 13 H 0.061 0.939 14 O -0.558 6.558 15 C -0.576 4.576 16 H 0.062 0.938 17 C 0.081 3.919 18 N -0.856 5.856 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 N -0.481 5.481 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.349 0.651 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 6.748 -14.663 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.107 4.107 3 C -0.170 4.170 4 C -0.189 4.189 5 C -0.039 4.039 6 C -0.165 4.165 7 C -0.070 4.070 8 N -0.105 5.105 9 O 0.005 5.995 10 C -0.004 4.004 11 C -0.101 4.101 12 C 0.178 3.822 13 H 0.079 0.921 14 O -0.361 6.361 15 C -0.613 4.613 16 H 0.080 0.920 17 C -0.126 4.126 18 N -0.491 5.491 19 Si 0.721 3.279 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 N -0.214 5.214 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.193 0.807 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.561 7.998 -14.776 16.996 hybrid contribution 0.085 -1.525 0.675 1.670 sum 2.646 6.473 -14.101 15.740 Atomic orbital electron populations 1.21396 0.91016 1.01582 1.02623 1.21786 0.95679 0.91031 1.02251 1.21350 0.99861 0.93527 1.02237 1.23435 1.02664 1.01133 0.91690 1.19316 0.96347 0.95782 0.92490 1.21250 0.92635 1.02680 0.99892 1.24540 0.88281 0.95679 0.98489 1.74682 1.14173 1.06133 1.15532 1.85276 1.36619 1.28629 1.48955 1.29271 0.80222 0.97232 0.93702 1.21535 1.04798 0.87095 0.96702 1.19403 0.85390 0.93969 0.83437 0.92141 1.86602 1.15752 1.44163 1.89580 1.21565 1.54636 0.93388 0.91755 0.91953 1.25039 0.93579 0.95922 0.98086 1.70094 1.46063 1.22748 1.10202 0.86537 0.77864 0.83128 0.80395 1.19541 1.20827 1.20817 1.71808 1.28111 1.07048 1.14450 0.91483 0.92639 0.91919 0.92187 0.91873 0.91867 0.87755 0.88805 0.90476 0.91796 0.91928 0.88178 0.88404 0.80668 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 8.12 37.16 0.30 -1.10 16 2 C -0.11 -1.29 2.70 -154.51 -0.42 -1.71 16 3 C -0.11 -1.07 8.88 37.16 0.33 -0.74 16 4 C -0.15 -1.77 9.17 -26.74 -0.25 -2.01 16 5 C -0.04 -0.54 2.65 -155.67 -0.41 -0.95 16 6 C -0.11 -1.38 8.86 37.16 0.33 -1.05 16 7 C 0.20 3.65 7.30 -156.37 -1.14 2.51 16 8 N -0.39 -7.30 8.68 30.90 0.27 -7.04 16 9 O 0.06 1.16 11.31 18.09 0.20 1.36 16 10 C 0.22 4.19 7.54 -13.06 -0.10 4.09 16 11 C -0.06 -1.17 5.46 -27.88 -0.15 -1.32 16 12 C 0.24 5.71 2.81 -27.88 -0.08 5.63 16 13 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 14 O -0.56 -14.09 12.48 -35.23 -0.44 -14.53 16 15 C -0.58 -14.83 8.76 -34.44 -0.30 -15.13 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 18 N -0.86 -24.69 12.84 55.43 0.71 -23.98 16 19 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 N -0.48 -9.42 11.20 -9.87 -0.11 -9.53 16 24 H 0.07 0.99 7.33 -51.93 -0.38 0.61 16 25 H 0.05 0.59 7.92 -51.93 -0.41 0.17 16 26 H 0.06 0.86 7.08 -51.93 -0.37 0.49 16 27 H 0.06 0.49 7.77 -51.93 -0.40 0.08 16 28 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 29 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 30 H 0.10 0.98 7.96 -51.93 -0.41 0.57 16 31 H 0.09 1.14 8.05 -51.93 -0.42 0.73 16 32 H 0.08 1.13 7.78 -51.93 -0.40 0.72 16 33 H 0.06 0.64 7.77 -51.93 -0.40 0.24 16 34 H 0.06 0.80 8.02 -51.93 -0.42 0.38 16 35 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.35 7.81 9.04 45.56 0.41 8.22 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -30.29 320.16 -6.39 -36.68 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.84 Total: 6.60 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.98 Total: -9.71 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.87 Total: -40.55 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.24 Total: -13.17 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.29 -6.39 -36.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702179915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.156 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds