Wall clock time and date at job start Mon Mar 30 2020 04:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 115.55885 * 2 1 4 4 C 1.52991 * 117.49959 * 214.31433 * 2 1 3 5 5 C 1.52991 * 117.49989 * 145.69031 * 2 1 3 6 6 C 1.52997 * 117.50132 * 215.00159 * 5 2 1 7 7 C 1.50705 * 117.50043 * 0.02562 * 5 2 1 8 8 N 1.29950 * 126.28161 * 0.02562 * 7 5 2 9 9 O 1.21301 * 110.24593 * 179.68224 * 8 7 5 10 10 C 1.33647 * 109.81105 * 0.46996 * 9 8 7 11 11 C 1.50703 * 126.55005 * 179.79997 * 10 9 8 12 12 C 1.53000 * 109.46912 * 269.68989 * 11 10 9 13 13 H 1.08990 * 109.47170 * 54.99987 * 12 11 10 14 14 O 1.42905 * 109.46848 * 294.99765 * 12 11 10 15 15 C 1.50700 * 109.46738 * 175.00201 * 12 11 10 16 16 H 1.07994 * 120.00251 * 359.97438 * 15 12 11 17 17 C 1.37882 * 119.99770 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99961 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99950 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47347 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46977 * 120.00149 * 19 17 15 22 22 H 1.48494 * 109.47291 * 240.00028 * 19 17 15 23 23 N 1.31122 * 106.89765 * 359.53802 * 10 9 8 24 24 H 1.08994 * 109.47137 * 274.31027 * 1 2 3 25 25 H 1.09005 * 109.47076 * 34.30967 * 1 2 3 26 26 H 1.08997 * 109.47063 * 154.30865 * 1 2 3 27 27 H 1.08999 * 109.46970 * 205.69048 * 3 2 1 28 28 H 1.08995 * 109.47467 * 325.69324 * 3 2 1 29 29 H 1.09000 * 109.47032 * 85.68940 * 3 2 1 30 30 H 1.09000 * 117.50082 * 145.01768 * 4 2 1 31 31 H 1.08999 * 117.50025 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47534 * 180.08594 * 6 5 2 33 33 H 1.09003 * 109.47452 * 300.09061 * 6 5 2 34 34 H 1.09001 * 109.47051 * 60.08599 * 6 5 2 35 35 H 1.09002 * 109.47152 * 149.68761 * 11 10 9 36 36 H 1.09001 * 109.46980 * 29.68861 * 11 10 9 37 37 H 0.96702 * 113.99974 * 300.00156 * 14 12 11 38 38 H 0.97006 * 119.99857 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7649 6 6 3.5487 -0.7758 1.4718 7 6 1.3721 -2.1410 1.4603 8 7 0.0729 -2.1655 1.4758 9 8 -0.3213 -3.1168 2.1170 10 6 0.7206 -3.8046 2.5941 11 6 0.6620 -5.0487 3.4425 12 6 0.6411 -4.6570 4.9214 13 1 -0.1836 -3.9679 5.1030 14 8 1.8755 -4.0236 5.2638 15 6 0.4590 -5.8920 5.7655 16 1 0.3670 -6.8594 5.2944 17 6 0.4099 -5.7869 7.1394 18 7 0.5214 -4.6087 7.7132 19 14 0.1835 -7.3176 8.1858 20 1 0.0838 -8.5091 7.3051 21 1 1.3468 -7.4715 9.0960 22 1 -1.0593 -7.1893 8.9884 23 7 1.8035 -3.1932 2.1782 24 1 -0.3633 0.0772 1.0247 25 1 -0.3633 0.8489 -0.5793 26 1 -0.3633 -0.9260 -0.4455 27 1 3.1824 1.3085 -0.4455 28 1 1.5812 2.0744 -0.5792 29 1 2.2772 1.7414 1.0248 30 1 3.1715 -0.8750 -1.2683 31 1 1.6113 -1.8586 -1.2680 32 1 3.9373 -1.6637 1.9705 33 1 4.2747 -0.4237 0.7388 34 1 3.3692 0.0061 2.2097 35 1 1.5376 -5.6664 3.2426 36 1 -0.2410 -5.6100 3.2024 37 1 2.6543 -4.5802 5.1271 38 1 0.4872 -4.5348 8.6798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702179915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:09 Heat of formation + Delta-G solvation = 10.531336 kcal Electronic energy + Delta-G solvation = -20441.068234 eV Core-core repulsion = 17286.706794 eV Total energy + Delta-G solvation = -3154.361439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.48553 -40.26915 -38.19041 -36.43613 -34.29122 -34.00522 -31.60391 -31.08940 -28.95397 -27.95175 -27.63802 -25.50662 -24.18062 -22.78588 -21.61048 -19.73539 -19.11452 -18.86057 -17.91719 -16.66652 -16.55722 -16.36684 -16.04328 -15.47570 -15.05910 -14.84200 -14.59372 -14.24239 -13.98750 -13.61557 -13.32132 -13.15645 -13.08625 -13.01551 -12.88380 -12.73877 -12.66456 -12.62869 -12.46852 -12.11825 -12.00775 -11.87006 -11.56448 -11.05404 -10.72664 -10.67305 -10.45341 -10.13670 -8.14129 -6.40672 0.18358 1.24601 1.44829 1.46815 1.58624 1.91991 2.41665 2.52605 2.63054 3.13988 3.15464 3.51845 3.69324 3.77835 4.08138 4.11399 4.30823 4.37865 4.45801 4.53125 4.65624 4.72641 4.75399 4.79230 4.84507 4.93658 4.95711 5.00708 5.02429 5.05502 5.12769 5.22849 5.31599 5.45481 5.55554 5.69256 5.99246 6.71137 7.21778 7.33217 7.51367 8.91390 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040941 B = 0.004130 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.741004 B = 6777.313358 C = 6957.896587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C -0.110 4.110 4 C -0.131 4.131 5 C -0.072 4.072 6 C -0.101 4.101 7 C 0.201 3.799 8 N -0.401 5.401 9 O 0.047 5.953 10 C 0.207 3.793 11 C -0.046 4.046 12 C 0.237 3.763 13 H 0.021 0.979 14 O -0.578 6.578 15 C -0.580 4.580 16 H 0.078 0.922 17 C 0.025 3.975 18 N -0.903 5.903 19 Si 0.965 3.035 20 H -0.255 1.255 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.495 5.495 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.136 0.864 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.360 0.640 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 6.505 -16.341 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.167 4.167 4 C -0.169 4.169 5 C -0.074 4.074 6 C -0.158 4.158 7 C -0.072 4.072 8 N -0.115 5.115 9 O -0.005 6.005 10 C -0.013 4.013 11 C -0.085 4.085 12 C 0.178 3.822 13 H 0.039 0.961 14 O -0.382 6.382 15 C -0.618 4.618 16 H 0.096 0.904 17 C -0.178 4.178 18 N -0.540 5.540 19 Si 0.790 3.210 20 H -0.179 1.179 21 H -0.209 1.209 22 H -0.209 1.209 23 N -0.229 5.229 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.206 0.794 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.431 7.726 -16.468 18.511 hybrid contribution -0.196 -1.384 1.140 1.803 sum 3.235 6.343 -15.328 16.901 Atomic orbital electron populations 1.21364 0.92005 1.01921 1.01236 1.21947 0.95106 0.92197 1.00933 1.21392 1.01005 0.91850 1.02441 1.23549 1.03691 1.00182 0.89491 1.19690 0.96937 0.96622 0.94153 1.21221 0.92657 1.01452 1.00469 1.25310 0.88472 0.95724 0.97668 1.74700 1.14713 1.06025 1.16050 1.85257 1.36873 1.29005 1.49370 1.29329 0.80461 0.97418 0.94074 1.21280 1.06802 0.87241 0.93160 1.19202 0.83918 0.92479 0.86602 0.96138 1.86548 1.16554 1.44986 1.90156 1.21998 1.53252 0.94400 0.92147 0.90412 1.25945 0.93332 0.98796 0.99711 1.70248 1.48117 1.25296 1.10373 0.85421 0.77401 0.79668 0.78540 1.17894 1.20886 1.20910 1.71816 1.28352 1.07747 1.14938 0.94041 0.90162 0.93348 0.90149 0.90339 0.92435 0.84584 0.89589 0.92823 0.88416 0.92473 0.86319 0.86242 0.79436 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.68 8.12 71.98 0.58 -2.09 16 2 C -0.10 -2.24 2.70 -52.18 -0.14 -2.38 16 3 C -0.11 -1.74 8.88 71.98 0.64 -1.10 16 4 C -0.13 -2.72 9.17 30.59 0.28 -2.44 16 5 C -0.07 -1.98 2.65 -52.93 -0.14 -2.12 16 6 C -0.10 -2.46 8.86 71.98 0.64 -1.82 16 7 C 0.20 7.27 7.30 138.46 1.01 8.28 16 8 N -0.40 -15.18 8.68 -60.32 -0.52 -15.70 16 9 O 0.05 1.85 11.31 74.80 0.85 2.69 16 10 C 0.21 8.14 7.54 88.38 0.67 8.80 16 11 C -0.05 -1.72 5.46 29.85 0.16 -1.55 16 12 C 0.24 11.60 2.81 29.85 0.08 11.68 16 13 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 14 O -0.58 -29.83 12.48 -148.98 -1.86 -31.69 16 15 C -0.58 -29.72 8.76 25.60 0.22 -29.50 16 16 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 17 C 0.02 1.32 5.40 84.66 0.46 1.78 16 18 N -0.90 -53.26 12.84 21.45 0.28 -52.98 16 19 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 N -0.50 -19.53 11.20 -303.20 -3.40 -22.93 16 24 H 0.04 1.23 7.33 -2.39 -0.02 1.21 16 25 H 0.08 1.55 7.92 -2.38 -0.02 1.53 16 26 H 0.05 1.31 7.08 -2.39 -0.02 1.30 16 27 H 0.08 0.96 7.77 -2.39 -0.02 0.94 16 28 H 0.08 1.02 7.92 -2.39 -0.02 1.00 16 29 H 0.06 0.99 8.02 -2.39 -0.02 0.97 16 30 H 0.14 1.96 7.96 -2.39 -0.02 1.94 16 31 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 32 H 0.05 1.55 7.78 -2.39 -0.02 1.53 16 33 H 0.10 1.66 7.77 -2.39 -0.02 1.64 16 34 H 0.06 1.42 8.02 -2.39 -0.02 1.40 16 35 H 0.12 4.01 8.14 -2.39 -0.02 3.99 16 36 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 37 H 0.36 16.32 9.04 -74.06 -0.67 15.65 16 38 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -66.56 320.16 2.23 -64.33 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.40 Total: 25.07 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.47 Total: -12.45 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -3.64 Total: -91.61 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -1.01 Total: -28.99 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -66.56 2.23 -64.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702179915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.856 kcal (2) G-P(sol) polarization free energy of solvation -66.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds