Wall clock time and date at job start Mon Mar 30 2020 04:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 115.56021 * 2 1 4 4 C 1.52995 * 117.50301 * 214.31101 * 2 1 3 5 5 C 1.52995 * 60.00301 * 252.50813 * 4 2 1 6 6 C 1.52999 * 117.50059 * 252.48917 * 5 4 2 7 7 C 1.50704 * 117.49818 * 107.48451 * 5 4 2 8 8 N 1.29941 * 126.28782 * 291.41772 * 7 5 4 9 9 O 1.21303 * 110.24993 * 179.68268 * 8 7 5 10 10 C 1.33644 * 109.80853 * 0.47017 * 9 8 7 11 11 C 1.50697 * 126.54934 * 179.79660 * 10 9 8 12 12 C 1.53002 * 109.47325 * 269.68894 * 11 10 9 13 13 H 1.08993 * 109.47662 * 305.00065 * 12 11 10 14 14 O 1.42903 * 109.46670 * 65.00638 * 12 11 10 15 15 C 1.50706 * 109.46931 * 184.99730 * 12 11 10 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 12 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 N 1.31133 * 106.89712 * 359.53979 * 10 9 8 24 24 H 1.08995 * 109.47568 * 274.30878 * 1 2 3 25 25 H 1.09003 * 109.47592 * 34.31276 * 1 2 3 26 26 H 1.09006 * 109.46702 * 154.31096 * 1 2 3 27 27 H 1.08993 * 109.47438 * 205.68684 * 3 2 1 28 28 H 1.08997 * 109.46862 * 325.69109 * 3 2 1 29 29 H 1.09001 * 109.47152 * 85.68356 * 3 2 1 30 30 H 1.09003 * 117.49733 * 145.01783 * 4 2 1 31 31 H 1.08999 * 117.49956 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.46965 * 248.74336 * 6 5 4 33 33 H 1.08994 * 109.47454 * 8.74170 * 6 5 4 34 34 H 1.09001 * 109.47241 * 128.74402 * 6 5 4 35 35 H 1.09006 * 109.47306 * 149.69357 * 11 10 9 36 36 H 1.09000 * 109.47114 * 29.69490 * 11 10 9 37 37 H 0.96695 * 114.00613 * 60.00174 * 14 12 11 38 38 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7649 5 6 2.2365 -1.1209 0.7650 6 6 3.5491 -0.7763 1.4715 7 6 1.3720 -2.1406 1.4608 8 7 0.0729 -2.1651 1.4767 9 8 -0.3213 -3.1161 2.1183 10 6 0.7206 -3.8038 2.5954 11 6 0.6621 -5.0475 3.4442 12 6 0.6415 -4.6554 4.9230 13 1 1.4991 -4.0195 5.1423 14 8 -0.5644 -3.9445 5.2104 15 6 0.7068 -5.8980 5.7732 16 1 0.7584 -6.8701 5.3056 17 6 0.7008 -5.7936 7.1480 18 7 0.7584 -6.8780 7.8899 19 14 0.6110 -4.1122 7.9568 20 1 1.9852 -3.5921 8.1715 21 1 -0.1395 -3.1797 7.0778 22 1 -0.0843 -4.2281 9.2638 23 7 1.8035 -3.1926 2.1791 24 1 -0.3634 0.0772 1.0247 25 1 -0.3634 0.8488 -0.5793 26 1 -0.3633 -0.9262 -0.4455 27 1 3.1822 1.3086 -0.4454 28 1 1.5810 2.0743 -0.5792 29 1 2.2771 1.7415 1.0248 30 1 3.1715 -0.8750 -1.2682 31 1 1.6113 -1.8582 -1.2686 32 1 3.9376 -1.6645 1.9697 33 1 4.2748 -0.4242 0.7384 34 1 3.3700 0.0054 2.2098 35 1 1.5376 -5.6654 3.2444 36 1 -0.2410 -5.6089 3.2045 37 1 -1.3701 -4.4508 5.0383 38 1 0.7545 -6.8045 8.8572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702179916.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:12 Heat of formation + Delta-G solvation = 36.586969 kcal Electronic energy + Delta-G solvation = -20517.539378 eV Core-core repulsion = 17364.307796 eV Total energy + Delta-G solvation = -3153.231582 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.15508 -39.34863 -36.72544 -35.16521 -32.66139 -32.35795 -30.68377 -29.68686 -28.16070 -27.04263 -26.10329 -24.29178 -22.53361 -21.07113 -20.57782 -18.65776 -17.64865 -17.42633 -16.61491 -15.50641 -15.04009 -14.70644 -14.49989 -14.25294 -14.13395 -13.69589 -13.37271 -12.90582 -12.76328 -12.71165 -12.28016 -12.19523 -12.00296 -11.83035 -11.73286 -11.51665 -11.28193 -11.19803 -11.03756 -10.69221 -10.54961 -10.38177 -10.04611 -9.67832 -9.32583 -9.15919 -8.72469 -8.43609 -6.22235 -4.35901 1.55114 2.50236 3.30053 3.35094 3.44834 3.49378 3.70029 3.72470 4.28269 4.45319 4.46432 4.62014 4.72869 4.90723 5.11065 5.35176 5.39917 5.48111 5.53863 5.61603 5.68306 5.70277 5.73702 5.74797 5.77402 5.83903 5.87081 5.93873 6.01196 6.08719 6.23545 6.30682 6.40290 6.43147 7.11308 7.40121 8.16221 8.57260 8.69685 8.88516 9.40703 10.87622 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032441 B = 0.004631 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.900266 B = 6045.096155 C = 6192.658351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.113 4.113 4 C -0.150 4.150 5 C -0.040 4.040 6 C -0.108 4.108 7 C 0.201 3.799 8 N -0.390 5.390 9 O 0.070 5.930 10 C 0.213 3.787 11 C -0.051 4.051 12 C 0.202 3.798 13 H 0.063 0.937 14 O -0.580 6.580 15 C -0.568 4.568 16 H 0.078 0.922 17 C 0.089 3.911 18 N -0.887 5.887 19 Si 0.868 3.132 20 H -0.286 1.286 21 H -0.218 1.218 22 H -0.293 1.293 23 N -0.492 5.492 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.360 0.640 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 12.232 -15.679 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 C -0.170 4.170 4 C -0.188 4.188 5 C -0.042 4.042 6 C -0.165 4.165 7 C -0.071 4.071 8 N -0.101 5.101 9 O 0.015 5.985 10 C -0.006 4.006 11 C -0.090 4.090 12 C 0.143 3.857 13 H 0.081 0.919 14 O -0.387 6.387 15 C -0.605 4.605 16 H 0.097 0.903 17 C -0.117 4.117 18 N -0.523 5.523 19 Si 0.694 3.306 20 H -0.212 1.212 21 H -0.140 1.140 22 H -0.220 1.220 23 N -0.225 5.225 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.207 0.793 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.996 13.268 -15.783 20.716 hybrid contribution -0.324 -0.094 0.581 0.672 sum 1.672 13.174 -15.202 20.186 Atomic orbital electron populations 1.21399 0.90973 1.01659 1.02614 1.21790 0.95694 0.91016 1.02147 1.21354 0.99917 0.93518 1.02218 1.23442 1.02720 1.01105 0.91544 1.19331 0.96327 0.95870 0.92637 1.21258 0.92722 1.02567 0.99995 1.24534 0.88335 0.95602 0.98622 1.74696 1.14070 1.06066 1.15223 1.85292 1.36379 1.28336 1.48512 1.29256 0.80294 0.97159 0.93893 1.21278 1.05624 0.87105 0.95024 1.19812 0.85507 0.93515 0.86875 0.91937 1.86730 1.16411 1.46141 1.89376 1.21351 1.54890 0.92746 0.91488 0.90347 1.24934 0.92242 0.97224 0.97261 1.69935 1.47885 1.28752 1.05727 0.87063 0.78806 0.86048 0.78699 1.21232 1.14047 1.21987 1.71825 1.28268 1.07397 1.15036 0.91503 0.92565 0.91897 0.92148 0.91808 0.91907 0.87684 0.88732 0.90565 0.91627 0.91970 0.86953 0.88436 0.79260 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 8.12 37.15 0.30 -1.02 16 2 C -0.11 -1.20 2.70 -154.51 -0.42 -1.61 16 3 C -0.11 -0.99 8.88 37.16 0.33 -0.66 16 4 C -0.15 -1.66 9.17 -26.74 -0.25 -1.90 16 5 C -0.04 -0.54 2.65 -155.66 -0.41 -0.95 16 6 C -0.11 -1.29 8.86 37.16 0.33 -0.96 16 7 C 0.20 3.44 7.30 -156.38 -1.14 2.30 16 8 N -0.39 -6.84 8.68 30.90 0.27 -6.57 16 9 O 0.07 1.27 11.31 18.10 0.20 1.48 16 10 C 0.21 3.89 7.54 -13.06 -0.10 3.79 16 11 C -0.05 -0.91 5.46 -27.88 -0.15 -1.06 16 12 C 0.20 4.44 2.30 -27.88 -0.06 4.38 16 13 H 0.06 1.48 7.57 -51.93 -0.39 1.09 16 14 O -0.58 -12.57 9.89 -35.23 -0.35 -12.92 16 15 C -0.57 -14.78 9.34 -34.44 -0.32 -15.10 16 16 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 18 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 19 Si 0.87 21.33 26.99 -169.99 -4.59 16.74 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.22 -5.29 5.30 56.52 0.30 -4.99 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 N -0.49 -9.17 11.20 -9.87 -0.11 -9.28 16 24 H 0.07 0.93 7.32 -51.93 -0.38 0.55 16 25 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 26 H 0.06 0.82 7.08 -51.93 -0.37 0.45 16 27 H 0.06 0.45 7.77 -51.93 -0.40 0.05 16 28 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 29 H 0.06 0.57 8.03 -51.93 -0.42 0.15 16 30 H 0.10 0.93 7.96 -51.93 -0.41 0.51 16 31 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 32 H 0.08 1.04 7.78 -51.93 -0.40 0.63 16 33 H 0.06 0.61 7.77 -51.93 -0.40 0.21 16 34 H 0.06 0.73 8.03 -51.93 -0.42 0.31 16 35 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 36 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.36 6.64 9.04 45.56 0.41 7.05 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -30.74 314.16 -5.99 -36.73 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.93 Total: 4.82 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.99 Total: -10.44 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.93 Total: -41.16 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.14 Total: -11.44 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.59 Total: 16.74 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.74 -5.99 -36.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702179916.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.317 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds