Wall clock time and date at job start Mon Mar 30 2020 04:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 115.56021 * 2 1 4 4 C 1.52995 * 117.50301 * 214.31101 * 2 1 3 5 5 C 1.52995 * 60.00301 * 252.50813 * 4 2 1 6 6 C 1.52999 * 117.50059 * 252.48917 * 5 4 2 7 7 C 1.50704 * 117.49818 * 107.48451 * 5 4 2 8 8 N 1.29941 * 126.28782 * 291.41772 * 7 5 4 9 9 O 1.21303 * 110.24993 * 179.68268 * 8 7 5 10 10 C 1.33644 * 109.80853 * 0.47017 * 9 8 7 11 11 C 1.50697 * 126.54934 * 179.79660 * 10 9 8 12 12 C 1.53002 * 109.47325 * 269.68894 * 11 10 9 13 13 H 1.08993 * 109.47662 * 305.00065 * 12 11 10 14 14 O 1.42903 * 109.46670 * 65.00638 * 12 11 10 15 15 C 1.50706 * 109.46931 * 184.99730 * 12 11 10 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 12 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 N 1.31133 * 106.89712 * 359.53979 * 10 9 8 24 24 H 1.08995 * 109.47568 * 274.30878 * 1 2 3 25 25 H 1.09003 * 109.47592 * 34.31276 * 1 2 3 26 26 H 1.09006 * 109.46702 * 154.31096 * 1 2 3 27 27 H 1.08993 * 109.47438 * 205.68684 * 3 2 1 28 28 H 1.08997 * 109.46862 * 325.69109 * 3 2 1 29 29 H 1.09001 * 109.47152 * 85.68356 * 3 2 1 30 30 H 1.09003 * 117.49733 * 145.01783 * 4 2 1 31 31 H 1.08999 * 117.49956 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.46965 * 248.74336 * 6 5 4 33 33 H 1.08994 * 109.47454 * 8.74170 * 6 5 4 34 34 H 1.09001 * 109.47241 * 128.74402 * 6 5 4 35 35 H 1.09006 * 109.47306 * 149.69357 * 11 10 9 36 36 H 1.09000 * 109.47114 * 29.69490 * 11 10 9 37 37 H 0.96695 * 114.00613 * 60.00174 * 14 12 11 38 38 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7649 5 6 2.2365 -1.1209 0.7650 6 6 3.5491 -0.7763 1.4715 7 6 1.3720 -2.1406 1.4608 8 7 0.0729 -2.1651 1.4767 9 8 -0.3213 -3.1161 2.1183 10 6 0.7206 -3.8038 2.5954 11 6 0.6621 -5.0475 3.4442 12 6 0.6415 -4.6554 4.9230 13 1 1.4991 -4.0195 5.1423 14 8 -0.5644 -3.9445 5.2104 15 6 0.7068 -5.8980 5.7732 16 1 0.7584 -6.8701 5.3056 17 6 0.7008 -5.7936 7.1480 18 7 0.7584 -6.8780 7.8899 19 14 0.6110 -4.1122 7.9568 20 1 1.9852 -3.5921 8.1715 21 1 -0.1395 -3.1797 7.0778 22 1 -0.0843 -4.2281 9.2638 23 7 1.8035 -3.1926 2.1791 24 1 -0.3634 0.0772 1.0247 25 1 -0.3634 0.8488 -0.5793 26 1 -0.3633 -0.9262 -0.4455 27 1 3.1822 1.3086 -0.4454 28 1 1.5810 2.0743 -0.5792 29 1 2.2771 1.7415 1.0248 30 1 3.1715 -0.8750 -1.2682 31 1 1.6113 -1.8582 -1.2686 32 1 3.9376 -1.6645 1.9697 33 1 4.2748 -0.4242 0.7384 34 1 3.3700 0.0054 2.2098 35 1 1.5376 -5.6654 3.2444 36 1 -0.2410 -5.6089 3.2045 37 1 -1.3701 -4.4508 5.0383 38 1 0.7545 -6.8045 8.8572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702179916.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:11 Heat of formation + Delta-G solvation = 15.106935 kcal Electronic energy + Delta-G solvation = -20518.470822 eV Core-core repulsion = 17364.307796 eV Total energy + Delta-G solvation = -3154.163026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.52009 -40.27958 -38.46720 -36.54184 -34.45321 -34.09020 -31.62253 -31.25772 -28.99233 -28.02651 -27.85943 -25.53950 -24.04709 -22.65058 -21.67647 -19.93971 -19.19679 -18.99899 -17.94077 -16.94082 -16.56907 -16.40954 -15.97170 -15.63205 -15.16339 -14.88831 -14.82463 -14.26134 -14.00474 -13.73664 -13.62051 -13.19051 -13.08490 -13.05921 -12.99880 -12.90198 -12.65172 -12.58924 -12.49842 -12.21699 -12.07009 -11.89394 -11.37206 -11.14039 -10.84155 -10.67962 -10.46517 -10.20131 -8.36437 -6.51137 0.16189 1.18488 1.38032 1.44632 1.72601 1.89298 2.41646 2.48108 2.60834 3.01348 3.11743 3.50654 3.65303 3.75678 3.95923 4.10097 4.18534 4.22541 4.36247 4.48808 4.63042 4.72485 4.74709 4.78572 4.82791 4.90432 4.94554 4.98981 5.00852 5.04414 5.09784 5.20685 5.30622 5.34484 5.41384 5.45250 6.06603 6.62032 7.16079 7.19956 7.31666 8.76788 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032441 B = 0.004631 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.900266 B = 6045.096155 C = 6192.658351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.111 4.111 4 C -0.134 4.134 5 C -0.072 4.072 6 C -0.102 4.102 7 C 0.199 3.801 8 N -0.397 5.397 9 O 0.063 5.937 10 C 0.209 3.791 11 C -0.039 4.039 12 C 0.210 3.790 13 H 0.047 0.953 14 O -0.587 6.587 15 C -0.560 4.560 16 H 0.057 0.943 17 C 0.039 3.961 18 N -0.931 5.931 19 Si 0.925 3.075 20 H -0.290 1.290 21 H -0.211 1.211 22 H -0.295 1.295 23 N -0.509 5.509 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.377 0.623 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 14.291 -17.445 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.100 4.100 3 C -0.167 4.167 4 C -0.172 4.172 5 C -0.074 4.074 6 C -0.160 4.160 7 C -0.073 4.073 8 N -0.109 5.109 9 O 0.010 5.990 10 C -0.010 4.010 11 C -0.078 4.078 12 C 0.151 3.849 13 H 0.065 0.935 14 O -0.395 6.395 15 C -0.598 4.598 16 H 0.075 0.925 17 C -0.162 4.162 18 N -0.570 5.570 19 Si 0.751 3.249 20 H -0.216 1.216 21 H -0.134 1.134 22 H -0.221 1.221 23 N -0.243 5.243 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.152 0.848 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.226 0.774 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.368 15.321 -17.560 23.424 hybrid contribution -0.469 -0.750 1.045 1.369 sum 1.899 14.571 -16.515 22.105 Atomic orbital electron populations 1.21365 0.91893 1.01898 1.01370 1.21937 0.95142 0.92102 1.00779 1.21395 1.00951 0.91881 1.02515 1.23552 1.03708 1.00340 0.89632 1.19696 0.96962 0.96643 0.94096 1.21240 0.92627 1.01516 1.00585 1.25249 0.88529 0.95629 0.97888 1.74716 1.14519 1.06002 1.15662 1.85275 1.36429 1.28574 1.48770 1.29178 0.80501 0.97151 0.94198 1.21052 1.07220 0.87278 0.92299 1.19504 0.85274 0.91265 0.88834 0.93538 1.86655 1.16918 1.46252 1.89651 1.21652 1.52893 0.93519 0.91721 0.92455 1.25653 0.92508 0.99815 0.98220 1.70038 1.50322 1.30592 1.06043 0.86178 0.78398 0.82622 0.77737 1.21633 1.13357 1.22128 1.71840 1.28686 1.08146 1.15619 0.93765 0.90261 0.93374 0.90285 0.90401 0.92255 0.84757 0.89627 0.92795 0.88567 0.92119 0.86413 0.86037 0.77440 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 8.12 71.98 0.58 -1.86 16 2 C -0.10 -1.99 2.70 -52.18 -0.14 -2.13 16 3 C -0.11 -1.55 8.88 71.98 0.64 -0.91 16 4 C -0.13 -2.59 9.17 30.59 0.28 -2.31 16 5 C -0.07 -1.82 2.65 -52.93 -0.14 -1.96 16 6 C -0.10 -2.25 8.86 71.98 0.64 -1.61 16 7 C 0.20 6.66 7.30 138.47 1.01 7.67 16 8 N -0.40 -13.73 8.68 -60.34 -0.52 -14.25 16 9 O 0.06 2.24 11.31 74.82 0.85 3.08 16 10 C 0.21 7.48 7.54 88.38 0.67 8.15 16 11 C -0.04 -1.37 5.46 29.85 0.16 -1.21 16 12 C 0.21 9.10 2.30 29.85 0.07 9.17 16 13 H 0.05 2.18 7.57 -2.39 -0.02 2.17 16 14 O -0.59 -24.53 9.89 -148.98 -1.47 -26.01 16 15 C -0.56 -29.17 9.34 25.60 0.24 -28.93 16 16 H 0.06 3.18 7.99 -2.91 -0.02 3.16 16 17 C 0.04 2.16 5.47 84.66 0.46 2.63 16 18 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 19 Si 0.93 44.26 26.99 68.60 1.85 46.11 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.21 -9.80 5.30 99.48 0.53 -9.27 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 23 N -0.51 -18.70 11.20 -303.21 -3.40 -22.09 16 24 H 0.04 1.20 7.32 -2.39 -0.02 1.18 16 25 H 0.08 1.39 7.92 -2.39 -0.02 1.37 16 26 H 0.05 1.21 7.08 -2.38 -0.02 1.19 16 27 H 0.08 0.83 7.77 -2.39 -0.02 0.81 16 28 H 0.08 0.89 7.92 -2.39 -0.02 0.87 16 29 H 0.06 0.90 8.03 -2.39 -0.02 0.88 16 30 H 0.13 1.79 7.96 -2.39 -0.02 1.77 16 31 H 0.09 1.82 8.05 -2.39 -0.02 1.80 16 32 H 0.05 1.42 7.78 -2.39 -0.02 1.40 16 33 H 0.10 1.47 7.77 -2.39 -0.02 1.45 16 34 H 0.06 1.31 8.03 -2.39 -0.02 1.30 16 35 H 0.12 3.98 8.14 -2.38 -0.02 3.96 16 36 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.38 13.20 9.04 -74.06 -0.67 12.54 16 38 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -66.04 314.16 2.29 -63.75 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.22 Total: 17.97 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 4.47 Total: -13.31 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -3.62 Total: -91.59 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.63 Total: -22.92 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.85 Total: 46.11 kcal Total: -66.04 2.29 -63.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702179916.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.852 kcal (2) G-P(sol) polarization free energy of solvation -66.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds