Wall clock time and date at job start Mon Mar 30 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 120.00317 * 2 1 4 4 C 1.52996 * 109.47131 * 124.72844 * 3 2 1 5 5 H 1.09001 * 109.49873 * 55.00115 * 4 3 2 6 6 C 1.53041 * 109.50005 * 175.06358 * 4 3 2 7 7 C 1.53039 * 109.53794 * 181.31411 * 6 4 3 8 8 C 1.53190 * 109.31734 * 298.63273 * 7 6 4 9 9 N 1.46933 * 108.77067 * 54.63803 * 8 7 6 10 10 C 1.34774 * 120.63095 * 126.38760 * 9 8 7 11 11 O 1.21439 * 119.99995 * 172.91465 * 10 9 8 12 12 C 1.48829 * 120.00256 * 352.92125 * 10 9 8 13 13 O 1.21509 * 119.99810 * 353.48566 * 12 10 9 14 14 N 1.34774 * 120.00449 * 173.48803 * 12 10 9 15 15 C 1.36116 * 120.00321 * 179.97438 * 14 12 10 16 16 H 1.08003 * 119.99961 * 359.97438 * 15 14 12 17 17 C 1.39586 * 119.99965 * 180.02562 * 15 14 12 18 18 N 1.31010 * 120.00332 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99850 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47170 * 59.99035 * 19 17 15 21 21 H 1.48494 * 109.47119 * 179.97438 * 19 17 15 22 22 H 1.48511 * 109.46878 * 299.99251 * 19 17 15 23 23 C 1.46933 * 118.76341 * 306.40926 * 9 8 7 24 24 H 1.08002 * 119.99655 * 0.27122 * 1 2 3 25 25 H 1.08003 * 120.00400 * 180.27447 * 1 2 3 26 26 H 1.08000 * 119.99133 * 179.72840 * 2 1 3 27 27 H 1.09003 * 109.46823 * 244.72744 * 3 2 1 28 28 H 1.08995 * 109.47157 * 4.72837 * 3 2 1 29 29 H 1.08995 * 109.45937 * 301.33600 * 6 4 3 30 30 H 1.08998 * 109.45877 * 61.31121 * 6 4 3 31 31 H 1.09001 * 109.49772 * 58.59157 * 7 6 4 32 32 H 1.09007 * 109.49769 * 178.68358 * 7 6 4 33 33 H 1.08996 * 109.58972 * 174.41968 * 8 7 6 34 34 H 1.08994 * 109.58921 * 294.71313 * 8 7 6 35 35 H 0.97005 * 119.99659 * 359.97438 * 14 12 10 36 36 H 0.96994 * 120.00235 * 180.02562 * 18 17 15 37 37 H 1.08999 * 109.56634 * 293.78946 * 23 9 8 38 38 H 1.09003 * 109.61490 * 173.35473 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0302 1.3357 1.1855 5 1 3.6782 0.4600 1.1494 6 6 3.8826 2.6049 1.1169 7 6 4.8723 2.6205 2.2841 8 6 4.0973 2.6295 3.6055 9 7 3.1688 1.4908 3.6168 10 6 3.1743 0.6105 4.6373 11 8 2.3200 -0.2503 4.7012 12 6 4.2270 0.6934 5.6860 13 8 5.1482 1.4760 5.5616 14 7 4.1588 -0.0996 6.7737 15 6 5.1219 -0.0241 7.7326 16 1 5.9411 0.6709 7.6216 17 6 5.0514 -0.8458 8.8588 18 7 4.0580 -1.6892 8.9932 19 14 6.3729 -0.7417 10.1750 20 1 6.4063 0.6331 10.7353 21 1 6.0693 -1.7103 11.2589 22 1 7.6934 -1.0649 9.5773 23 6 2.2343 1.3293 2.4945 24 1 -0.5400 0.9353 -0.0044 25 1 -0.5401 -0.9353 0.0045 26 1 1.8499 -0.9354 0.0044 27 1 2.6252 1.4002 -0.9293 28 1 1.3583 2.1317 0.0847 29 1 4.4312 2.6234 0.1753 30 1 3.2359 3.4803 1.1777 31 1 5.5030 1.7327 2.2382 32 1 5.4948 3.5132 2.2214 33 1 4.7945 2.5408 4.4386 34 1 3.5379 3.5607 3.6947 35 1 3.4232 -0.7241 6.8732 36 1 4.0088 -2.2599 9.7759 37 1 1.5207 2.1531 2.4922 38 1 1.7028 0.3829 2.5942 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703643111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:57 Heat of formation + Delta-G solvation = -50.693050 kcal Electronic energy + Delta-G solvation = -20453.109211 eV Core-core repulsion = 17296.092884 eV Total energy + Delta-G solvation = -3157.016328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03112 -38.11809 -36.93179 -35.27751 -34.22611 -32.37405 -31.44578 -30.84508 -26.82243 -25.96903 -24.98072 -22.25250 -22.18996 -20.03549 -19.79079 -18.94019 -18.05690 -16.53681 -16.08021 -15.38181 -15.09588 -14.81289 -14.78191 -14.24001 -14.05355 -13.83917 -13.45335 -13.26854 -12.88298 -12.78090 -12.17171 -12.10643 -11.92714 -11.71405 -11.28693 -11.20915 -10.88928 -10.85581 -10.68461 -10.55104 -10.44595 -10.24118 -9.92370 -9.72050 -9.35465 -8.30909 -8.19986 -7.78321 -6.72240 -4.05173 2.23861 2.42586 3.13088 3.15174 3.15917 3.37247 4.01346 4.22542 4.62622 4.79375 4.88559 4.97185 5.10529 5.14713 5.24607 5.30088 5.50821 5.59712 5.63431 5.73679 5.80554 5.81173 5.93291 5.95333 6.00234 6.15569 6.22561 6.27237 6.55755 6.59492 6.70407 6.74861 7.06776 7.27379 7.67774 7.86761 8.32952 8.61295 8.91827 9.26298 9.80662 10.41979 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.031586 B = 0.004462 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.256843 B = 6273.075675 C = 6981.636790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.086 4.086 4 C -0.098 4.098 5 H 0.075 0.925 6 C -0.115 4.115 7 C -0.128 4.128 8 C 0.045 3.955 9 N -0.591 5.591 10 C 0.515 3.485 11 O -0.550 6.550 12 C 0.392 3.608 13 O -0.583 6.583 14 N -0.491 5.491 15 C -0.308 4.308 16 H 0.114 0.886 17 C 0.033 3.967 18 N -0.866 5.866 19 Si 0.941 3.059 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.268 1.268 23 C 0.116 3.884 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.173 0.827 34 H 0.048 0.952 35 H 0.406 0.594 36 H 0.282 0.718 37 H 0.060 0.940 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 5.698 -13.619 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.123 4.123 4 C -0.117 4.117 5 H 0.093 0.907 6 C -0.153 4.153 7 C -0.166 4.166 8 C -0.076 4.076 9 N -0.325 5.325 10 C 0.301 3.699 11 O -0.428 6.428 12 C 0.177 3.823 13 O -0.474 6.474 14 N -0.123 5.123 15 C -0.439 4.439 16 H 0.132 0.868 17 C -0.175 4.175 18 N -0.503 5.503 19 Si 0.766 3.234 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.007 4.007 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.188 0.812 34 H 0.066 0.934 35 H 0.241 0.759 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.675 5.566 -13.485 14.831 hybrid contribution -0.018 -0.371 0.467 0.597 sum -2.693 5.195 -13.018 14.273 Atomic orbital electron populations 1.23817 0.95941 1.01711 1.01882 1.22984 0.96105 0.98608 0.99201 1.20773 0.98035 0.95457 0.98081 1.21497 0.96914 0.99231 0.94041 0.90671 1.21622 0.97859 0.97135 0.98664 1.21840 0.97851 1.02299 0.94654 1.23392 0.94417 0.86649 1.03098 1.47817 1.37195 1.27091 1.20377 1.20522 0.85393 0.80938 0.83050 1.90672 1.38925 1.36426 1.76733 1.18948 0.89261 0.88528 0.85529 1.90029 1.37675 1.41720 1.77953 1.41583 1.23493 1.31701 1.15566 1.19875 1.04917 1.21235 0.97833 0.86806 1.25617 0.98012 0.94932 0.98907 1.69473 1.29959 1.20987 1.29892 0.85763 0.80060 0.78615 0.78979 1.19290 1.20561 1.19298 1.21609 0.91502 1.02826 0.84792 0.88736 0.88626 0.87413 0.90789 0.91416 0.92171 0.92110 0.91662 0.91209 0.81165 0.93354 0.75878 0.90732 0.92222 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.99 14.32 29.01 0.42 -1.58 16 2 C -0.15 -1.62 8.61 -36.03 -0.31 -1.93 16 3 C -0.09 -0.87 5.14 -27.89 -0.14 -1.01 16 4 C -0.10 -1.22 2.33 -90.50 -0.21 -1.43 16 5 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 6 C -0.12 -1.33 5.17 -26.69 -0.14 -1.46 16 7 C -0.13 -1.76 6.08 -26.61 -0.16 -1.92 16 8 C 0.05 0.76 6.27 -3.71 -0.02 0.74 16 9 N -0.59 -11.02 2.97 -173.50 -0.52 -11.53 16 10 C 0.51 11.63 7.72 -11.88 -0.09 11.54 16 11 O -0.55 -13.37 15.93 5.42 0.09 -13.28 16 12 C 0.39 9.76 7.70 -11.88 -0.09 9.67 16 13 O -0.58 -14.79 12.66 5.36 0.07 -14.72 16 14 N -0.49 -12.99 5.24 -11.59 -0.06 -13.05 16 15 C -0.31 -8.29 9.67 -15.15 -0.15 -8.44 16 16 H 0.11 3.09 7.15 -52.48 -0.38 2.71 16 17 C 0.03 0.84 5.51 -17.40 -0.10 0.74 16 18 N -0.87 -22.89 13.03 55.53 0.72 -22.16 16 19 Si 0.94 19.67 29.56 -169.99 -5.02 14.65 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 C 0.12 1.78 5.41 -3.70 -0.02 1.76 16 24 H 0.09 0.87 7.84 -52.49 -0.41 0.46 16 25 H 0.10 0.90 8.06 -52.48 -0.42 0.48 16 26 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.64 7.79 -51.93 -0.40 0.23 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.17 3.44 3.78 -56.84 -0.21 3.23 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.41 10.90 7.37 -40.82 -0.30 10.60 16 36 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.53 6.49 -51.93 -0.34 1.19 16 LS Contribution 314.61 15.07 4.74 4.74 Total: -1.00 -28.65 314.61 -6.41 -35.06 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -5.41 Total: 13.61 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.02 Total: 6.69 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.15 Total: -46.74 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: 0.15 Total: -28.00 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.65 -6.41 -35.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703643111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.637 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds