Wall clock time and date at job start Mon Mar 30 2020 05:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 120.00317 * 2 1 4 4 C 1.52996 * 109.47131 * 124.72844 * 3 2 1 5 5 H 1.09001 * 109.49873 * 55.00115 * 4 3 2 6 6 C 1.53041 * 109.50005 * 175.06358 * 4 3 2 7 7 C 1.53039 * 109.53794 * 181.31411 * 6 4 3 8 8 C 1.53190 * 109.31734 * 298.63273 * 7 6 4 9 9 N 1.46933 * 108.77067 * 54.63803 * 8 7 6 10 10 C 1.34774 * 120.63095 * 126.38760 * 9 8 7 11 11 O 1.21439 * 119.99995 * 172.91465 * 10 9 8 12 12 C 1.48829 * 120.00256 * 352.92125 * 10 9 8 13 13 O 1.21509 * 119.99810 * 353.48566 * 12 10 9 14 14 N 1.34774 * 120.00449 * 173.48803 * 12 10 9 15 15 C 1.36116 * 120.00321 * 179.97438 * 14 12 10 16 16 H 1.08003 * 119.99961 * 359.97438 * 15 14 12 17 17 C 1.39586 * 119.99965 * 180.02562 * 15 14 12 18 18 N 1.31010 * 120.00332 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99850 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47170 * 59.99035 * 19 17 15 21 21 H 1.48494 * 109.47119 * 179.97438 * 19 17 15 22 22 H 1.48511 * 109.46878 * 299.99251 * 19 17 15 23 23 C 1.46933 * 118.76341 * 306.40926 * 9 8 7 24 24 H 1.08002 * 119.99655 * 0.27122 * 1 2 3 25 25 H 1.08003 * 120.00400 * 180.27447 * 1 2 3 26 26 H 1.08000 * 119.99133 * 179.72840 * 2 1 3 27 27 H 1.09003 * 109.46823 * 244.72744 * 3 2 1 28 28 H 1.08995 * 109.47157 * 4.72837 * 3 2 1 29 29 H 1.08995 * 109.45937 * 301.33600 * 6 4 3 30 30 H 1.08998 * 109.45877 * 61.31121 * 6 4 3 31 31 H 1.09001 * 109.49772 * 58.59157 * 7 6 4 32 32 H 1.09007 * 109.49769 * 178.68358 * 7 6 4 33 33 H 1.08996 * 109.58972 * 174.41968 * 8 7 6 34 34 H 1.08994 * 109.58921 * 294.71313 * 8 7 6 35 35 H 0.97005 * 119.99659 * 359.97438 * 14 12 10 36 36 H 0.96994 * 120.00235 * 180.02562 * 18 17 15 37 37 H 1.08999 * 109.56634 * 293.78946 * 23 9 8 38 38 H 1.09003 * 109.61490 * 173.35473 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0302 1.3357 1.1855 5 1 3.6782 0.4600 1.1494 6 6 3.8826 2.6049 1.1169 7 6 4.8723 2.6205 2.2841 8 6 4.0973 2.6295 3.6055 9 7 3.1688 1.4908 3.6168 10 6 3.1743 0.6105 4.6373 11 8 2.3200 -0.2503 4.7012 12 6 4.2270 0.6934 5.6860 13 8 5.1482 1.4760 5.5616 14 7 4.1588 -0.0996 6.7737 15 6 5.1219 -0.0241 7.7326 16 1 5.9411 0.6709 7.6216 17 6 5.0514 -0.8458 8.8588 18 7 4.0580 -1.6892 8.9932 19 14 6.3729 -0.7417 10.1750 20 1 6.4063 0.6331 10.7353 21 1 6.0693 -1.7103 11.2589 22 1 7.6934 -1.0649 9.5773 23 6 2.2343 1.3293 2.4945 24 1 -0.5400 0.9353 -0.0044 25 1 -0.5401 -0.9353 0.0045 26 1 1.8499 -0.9354 0.0044 27 1 2.6252 1.4002 -0.9293 28 1 1.3583 2.1317 0.0847 29 1 4.4312 2.6234 0.1753 30 1 3.2359 3.4803 1.1777 31 1 5.5030 1.7327 2.2382 32 1 5.4948 3.5132 2.2214 33 1 4.7945 2.5408 4.4386 34 1 3.5379 3.5607 3.6947 35 1 3.4232 -0.7241 6.8732 36 1 4.0088 -2.2599 9.7759 37 1 1.5207 2.1531 2.4922 38 1 1.7028 0.3829 2.5942 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703643111.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:57 Heat of formation + Delta-G solvation = -68.933874 kcal Electronic energy + Delta-G solvation = -20453.900193 eV Core-core repulsion = 17296.092884 eV Total energy + Delta-G solvation = -3157.807309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69437 -39.66703 -38.65104 -36.70237 -35.83142 -33.75425 -33.33192 -31.95939 -28.38186 -27.30134 -26.53318 -23.92191 -23.33640 -21.40279 -20.74615 -20.53192 -19.84769 -18.29301 -17.78772 -16.95465 -16.64241 -16.28635 -15.92315 -15.80448 -15.56564 -15.21419 -14.92037 -14.66399 -14.28198 -13.85038 -13.75897 -13.66428 -13.17600 -12.95866 -12.89266 -12.59264 -12.39720 -12.11930 -12.04042 -11.93301 -11.74626 -11.67816 -11.47409 -11.23606 -10.30329 -10.18498 -9.69776 -9.57995 -8.66832 -6.12050 0.57052 1.41248 1.43539 1.49706 1.54327 1.76623 2.27637 2.34268 3.08951 3.14529 3.69182 3.82331 3.91939 3.97352 4.17563 4.21261 4.32040 4.41811 4.52152 4.66897 4.77461 4.79718 4.88324 4.99823 5.05751 5.11406 5.13724 5.22863 5.25019 5.35000 5.49404 5.57620 5.67443 5.79337 5.91561 6.21673 6.36379 6.79611 6.96787 7.26528 7.79878 8.48453 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.031586 B = 0.004462 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.256843 B = 6273.075675 C = 6981.636790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C -0.076 4.076 4 C -0.091 4.091 5 H 0.057 0.943 6 C -0.108 4.108 7 C -0.123 4.123 8 C 0.040 3.960 9 N -0.580 5.580 10 C 0.511 3.489 11 O -0.575 6.575 12 C 0.389 3.611 13 O -0.592 6.592 14 N -0.506 5.506 15 C -0.345 4.345 16 H 0.104 0.896 17 C -0.004 4.004 18 N -0.896 5.896 19 Si 1.011 2.989 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.263 1.263 23 C 0.111 3.889 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.071 0.929 35 H 0.399 0.601 36 H 0.289 0.711 37 H 0.082 0.918 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.562 7.237 -15.037 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.186 4.186 3 C -0.114 4.114 4 C -0.110 4.110 5 H 0.075 0.925 6 C -0.146 4.146 7 C -0.162 4.162 8 C -0.081 4.081 9 N -0.312 5.312 10 C 0.296 3.704 11 O -0.456 6.456 12 C 0.175 3.825 13 O -0.483 6.483 14 N -0.139 5.139 15 C -0.474 4.474 16 H 0.122 0.878 17 C -0.209 4.209 18 N -0.533 5.533 19 Si 0.832 3.168 20 H -0.186 1.186 21 H -0.193 1.193 22 H -0.188 1.188 23 C -0.010 4.010 24 H 0.125 0.875 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.514 7.142 -14.948 16.756 hybrid contribution -0.119 -0.784 0.794 1.122 sum -2.633 6.357 -14.155 15.739 Atomic orbital electron populations 1.23990 0.95908 1.02475 1.00941 1.23084 0.96496 0.98906 1.00091 1.20723 0.97751 0.95377 0.97510 1.21449 0.97022 0.99358 0.93220 0.92467 1.21608 0.97447 0.96934 0.98567 1.21807 0.98063 1.02562 0.93726 1.23341 0.94149 0.86638 1.03947 1.47960 1.37347 1.26107 1.19778 1.20157 0.84805 0.81774 0.83670 1.90653 1.39641 1.37780 1.77489 1.19523 0.89682 0.87667 0.85616 1.90082 1.38178 1.41610 1.78392 1.41702 1.23553 1.32249 1.16392 1.20012 1.05493 1.22669 0.99273 0.87813 1.26579 1.00078 0.93795 1.00401 1.69549 1.31467 1.21488 1.30828 0.84733 0.77026 0.78998 0.76056 1.18642 1.19271 1.18782 1.21894 0.91592 1.02681 0.84869 0.87492 0.88482 0.88280 0.88837 0.89966 0.89593 0.90275 0.93624 0.88824 0.84349 0.91030 0.76625 0.90057 0.90028 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.64 14.32 67.78 0.97 -2.67 16 2 C -0.17 -3.32 8.61 25.64 0.22 -3.10 16 3 C -0.08 -1.29 5.14 29.84 0.15 -1.14 16 4 C -0.09 -2.06 2.33 -10.72 -0.02 -2.08 16 5 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 6 C -0.11 -2.07 5.17 30.62 0.16 -1.91 16 7 C -0.12 -3.10 6.08 30.67 0.19 -2.92 16 8 C 0.04 1.29 6.27 86.36 0.54 1.83 16 9 N -0.58 -21.38 2.97 -821.16 -2.44 -23.82 16 10 C 0.51 23.70 7.72 87.08 0.67 24.37 16 11 O -0.58 -28.89 15.93 -3.52 -0.06 -28.95 16 12 C 0.39 20.14 7.70 87.08 0.67 20.81 16 13 O -0.59 -30.98 12.66 -3.74 -0.05 -31.03 16 14 N -0.51 -27.99 5.24 -308.87 -1.62 -29.61 16 15 C -0.34 -19.21 9.67 84.35 0.82 -18.39 16 16 H 0.10 5.84 7.15 -2.91 -0.02 5.82 16 17 C 0.00 -0.21 5.51 85.14 0.47 0.26 16 18 N -0.90 -48.25 13.03 21.76 0.28 -47.97 16 19 Si 1.01 40.31 29.56 68.60 2.03 42.34 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 21 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 C 0.11 3.27 5.41 86.36 0.47 3.73 16 24 H 0.11 1.69 7.84 -2.91 -0.02 1.67 16 25 H 0.10 1.73 8.06 -2.91 -0.02 1.70 16 26 H 0.10 2.10 8.06 -2.91 -0.02 2.07 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.20 7.79 -2.39 -0.02 1.18 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.14 5.62 3.78 -80.13 -0.30 5.32 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.40 22.57 7.37 -92.70 -0.68 21.89 16 36 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 2.37 6.49 -2.39 -0.02 2.35 16 Total: -1.00 -63.99 314.61 3.53 -60.46 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: 0.09 Total: 39.78 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 5.30 Total: 18.80 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -3.78 Total: -101.39 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -0.10 Total: -59.98 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -63.99 3.53 -60.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703643111.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.478 kcal (2) G-P(sol) polarization free energy of solvation -63.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds