Wall clock time and date at job start Mon Mar 30 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47005 * 2 1 4 4 H 1.08999 * 109.46710 * 303.08891 * 3 2 1 5 5 C 1.50696 * 109.46827 * 183.09458 * 3 2 1 6 6 H 1.07999 * 119.99865 * 245.42987 * 5 3 2 7 7 C 1.37884 * 120.00365 * 65.43075 * 5 3 2 8 8 N 1.31513 * 119.99617 * 9.47360 * 7 5 3 9 9 Si 1.86800 * 120.00034 * 189.48575 * 7 5 3 10 10 H 1.48499 * 109.47480 * 84.98955 * 9 7 5 11 11 H 1.48504 * 109.46707 * 204.98931 * 9 7 5 12 12 H 1.48502 * 109.47044 * 324.98658 * 9 7 5 13 13 N 1.46494 * 109.47413 * 63.09195 * 3 2 1 14 14 C 1.34854 * 119.59394 * 239.99745 * 13 3 2 15 15 O 1.21226 * 120.39683 * 1.64591 * 14 13 3 16 16 C 1.51627 * 119.19913 * 181.66876 * 14 13 3 17 17 H 1.09006 * 112.61409 * 159.64183 * 16 14 13 18 18 C 1.54818 * 107.32038 * 284.25037 * 16 14 13 19 19 C 1.54364 * 104.61816 * 85.74615 * 18 16 14 20 20 C 1.54808 * 104.62286 * 0.02562 * 19 18 16 21 21 H 1.08998 * 112.71674 * 148.94509 * 20 19 18 22 22 C 1.34851 * 119.59247 * 59.72627 * 13 3 2 23 23 O 1.21228 * 120.39949 * 358.30672 * 22 13 3 24 24 N 1.49035 * 103.69022 * 26.70814 * 20 19 18 25 25 C 1.46899 * 111.00349 * 197.37249 * 24 20 19 26 26 H 1.08993 * 109.46976 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46851 * 300.00328 * 1 2 3 28 28 H 1.08995 * 109.47240 * 59.99673 * 1 2 3 29 29 H 1.08990 * 109.46859 * 239.99651 * 2 1 3 30 30 H 1.09000 * 109.46891 * 119.99691 * 2 1 3 31 31 H 0.96999 * 119.99935 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.40902 * 204.53669 * 18 16 14 33 33 H 1.09002 * 110.40105 * 326.96447 * 18 16 14 34 34 H 1.09007 * 110.40714 * 118.79001 * 19 18 16 35 35 H 1.08999 * 110.40710 * 241.09651 * 19 18 16 36 36 H 1.08999 * 109.47397 * 173.35393 * 25 24 20 37 37 H 1.09001 * 109.46756 * 293.35268 * 25 24 20 38 38 H 1.09000 * 109.46998 * 53.34434 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6322 1.9720 -0.8610 5 6 3.5451 1.4432 -0.0767 6 1 4.1278 1.8169 0.7522 7 6 4.1781 0.9666 -1.2051 8 7 3.4784 0.6865 -2.2828 9 14 6.0296 0.7186 -1.2029 10 1 6.3498 -0.6148 -0.6332 11 1 6.5412 0.7980 -2.5948 12 1 6.6696 1.7755 -0.3792 13 7 1.6135 2.1113 1.2316 14 6 0.8335 3.2089 1.1576 15 8 0.4609 3.6252 0.0818 16 6 0.4287 3.9163 2.4362 17 1 0.1180 4.9469 2.2647 18 6 -0.6758 3.0625 3.1055 19 6 0.0928 2.0158 3.9400 20 6 1.5864 2.3400 3.6938 21 1 2.2161 2.0995 4.5504 22 6 2.0012 1.6186 2.4255 23 8 2.6729 0.6111 2.4845 24 7 1.5831 3.7951 3.3715 25 6 2.8360 4.1919 2.7152 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9237 0.3515 -3.0767 32 1 -1.2964 3.6829 3.7520 33 1 -1.2869 2.5708 2.3486 34 1 -0.1492 2.1207 4.9976 35 1 -0.1415 1.0086 3.5955 36 1 2.7610 5.2280 2.3853 37 1 3.6620 4.0936 3.4196 38 1 3.0146 3.5482 1.8539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704580572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:21 Heat of formation + Delta-G solvation = -41.773816 kcal Electronic energy + Delta-G solvation = -22450.999956 eV Core-core repulsion = 19294.370396 eV Total energy + Delta-G solvation = -3156.629561 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.02076 -38.06028 -37.71301 -35.09311 -32.86936 -32.36293 -31.34663 -29.54919 -27.43095 -25.75720 -23.87326 -23.12376 -22.41505 -21.04359 -20.23697 -17.73342 -17.31844 -16.95461 -16.33258 -15.49080 -15.45569 -14.92633 -14.36186 -14.05730 -13.65293 -13.41328 -13.04977 -12.90906 -12.86151 -12.54060 -12.10883 -11.78282 -11.60478 -11.52253 -11.46418 -11.26178 -11.06811 -11.04473 -10.77468 -10.71598 -10.29959 -10.16857 -9.88028 -9.55475 -9.20870 -8.55069 -8.37616 -8.17476 -6.13012 -4.15223 2.11842 3.12307 3.28594 3.29001 3.34409 3.40776 3.97569 4.10674 4.38315 4.49425 4.50394 4.83483 5.12968 5.20011 5.32785 5.36251 5.52921 5.58582 5.68123 5.73399 5.86871 5.92477 6.07256 6.10727 6.11991 6.30039 6.42621 6.51510 6.69249 6.79165 6.96804 7.04348 7.37547 7.55665 7.78916 7.91548 8.09735 8.30402 8.49360 8.83633 9.47299 10.95314 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.008472 C = 0.007808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.920693 B = 3304.123724 C = 3585.302707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.254 3.746 4 H 0.074 0.926 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.549 5.549 14 C 0.490 3.510 15 O -0.498 6.498 16 C 0.038 3.962 17 H 0.139 0.861 18 C -0.115 4.115 19 C -0.116 4.116 20 C 0.036 3.964 21 H 0.139 0.861 22 C 0.492 3.508 23 O -0.470 6.470 24 N -0.486 5.486 25 C -0.020 4.020 26 H 0.038 0.962 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.264 0.736 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 4.390 11.879 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.156 3.844 4 H 0.092 0.908 5 C -0.556 4.556 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.291 5.291 14 C 0.277 3.723 15 O -0.370 6.370 16 C -0.074 4.074 17 H 0.157 0.843 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.076 4.076 21 H 0.156 0.844 22 C 0.278 3.722 23 O -0.339 6.339 24 N -0.211 5.211 25 C -0.169 4.169 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.853 4.329 11.582 14.137 hybrid contribution 1.229 -0.649 -0.896 1.654 sum -5.624 3.680 10.686 12.624 Atomic orbital electron populations 1.21806 0.98936 0.99515 0.99971 1.21909 0.92012 0.99419 1.03431 1.19307 0.95426 0.89525 0.80190 0.90811 1.21043 0.89794 1.42971 1.01765 0.92440 1.24839 0.98624 0.95225 0.94787 1.69954 1.35969 1.44113 1.02237 0.86505 0.84970 0.78902 0.77025 1.20340 1.21197 1.20004 1.47449 1.44731 1.26367 1.10572 1.21961 0.77643 0.80719 0.91987 1.90683 1.51380 1.64080 1.30835 1.23877 0.93446 1.01539 0.88502 0.84340 1.22413 0.96638 0.96985 0.99322 1.22410 0.91488 0.99575 1.01921 1.23927 0.99507 0.87813 0.96332 0.84374 1.21726 0.79459 0.85576 0.85433 1.90684 1.33257 1.23302 1.86647 1.65972 1.03475 1.15429 1.36254 1.22976 0.91344 1.02565 0.99997 0.94240 0.95203 0.93363 0.89548 0.91984 0.92596 0.89015 0.90319 0.89090 0.90281 0.90347 0.90224 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.78 37.16 0.36 -2.60 16 2 C -0.13 -3.14 5.13 -26.73 -0.14 -3.28 16 3 C 0.25 6.50 1.81 -69.09 -0.13 6.37 16 4 H 0.07 2.14 6.83 -51.93 -0.35 1.79 16 5 C -0.52 -14.41 7.62 -34.44 -0.26 -14.67 16 6 H 0.06 1.63 7.10 -52.49 -0.37 1.26 16 7 C 0.07 1.91 5.18 -17.82 -0.09 1.82 16 8 N -0.89 -25.49 12.16 55.43 0.67 -24.81 16 9 Si 0.90 21.87 29.55 -169.99 -5.02 16.84 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.55 -11.67 0.94 -108.69 -0.10 -11.77 16 14 C 0.49 9.50 5.29 -10.49 -0.06 9.45 16 15 O -0.50 -11.35 16.44 5.60 0.09 -11.25 16 16 C 0.04 0.53 4.14 -66.25 -0.27 0.26 16 17 H 0.14 1.69 8.14 -51.93 -0.42 1.27 16 18 C -0.12 -1.29 6.42 -25.06 -0.16 -1.46 16 19 C -0.12 -1.31 6.42 -25.06 -0.16 -1.47 16 20 C 0.04 0.51 4.14 -66.24 -0.27 0.23 16 21 H 0.14 1.72 8.14 -51.93 -0.42 1.30 16 22 C 0.49 9.60 4.41 -10.46 -0.05 9.55 16 23 O -0.47 -10.76 14.13 5.60 0.08 -10.68 16 24 N -0.49 -6.70 5.73 -222.76 -1.28 -7.98 16 25 C -0.02 -0.31 8.96 60.06 0.54 0.23 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.56 7.69 -51.93 -0.40 0.16 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 2.30 6.84 -51.93 -0.35 1.95 16 30 H 0.06 1.55 5.99 -51.93 -0.31 1.24 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.22 4.74 -51.93 -0.25 0.97 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -31.82 297.94 -7.13 -38.94 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.37 Total: 1.78 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -0.69 Total: 4.44 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.70 Total: -44.56 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.17 Total: -21.94 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.82 -7.13 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704580572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.830 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds