Wall clock time and date at job start Mon Mar 30 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47005 * 2 1 4 4 H 1.08999 * 109.46710 * 303.08891 * 3 2 1 5 5 C 1.50696 * 109.46827 * 183.09458 * 3 2 1 6 6 H 1.07999 * 119.99865 * 245.42987 * 5 3 2 7 7 C 1.37884 * 120.00365 * 65.43075 * 5 3 2 8 8 N 1.31513 * 119.99617 * 9.47360 * 7 5 3 9 9 Si 1.86800 * 120.00034 * 189.48575 * 7 5 3 10 10 H 1.48499 * 109.47480 * 84.98955 * 9 7 5 11 11 H 1.48504 * 109.46707 * 204.98931 * 9 7 5 12 12 H 1.48502 * 109.47044 * 324.98658 * 9 7 5 13 13 N 1.46494 * 109.47413 * 63.09195 * 3 2 1 14 14 C 1.34854 * 119.59394 * 239.99745 * 13 3 2 15 15 O 1.21226 * 120.39683 * 1.64591 * 14 13 3 16 16 C 1.51627 * 119.19913 * 181.66876 * 14 13 3 17 17 H 1.09006 * 112.61409 * 159.64183 * 16 14 13 18 18 C 1.54818 * 107.32038 * 284.25037 * 16 14 13 19 19 C 1.54364 * 104.61816 * 85.74615 * 18 16 14 20 20 C 1.54808 * 104.62286 * 0.02562 * 19 18 16 21 21 H 1.08998 * 112.71674 * 148.94509 * 20 19 18 22 22 C 1.34851 * 119.59247 * 59.72627 * 13 3 2 23 23 O 1.21228 * 120.39949 * 358.30672 * 22 13 3 24 24 N 1.49035 * 103.69022 * 26.70814 * 20 19 18 25 25 C 1.46899 * 111.00349 * 197.37249 * 24 20 19 26 26 H 1.08993 * 109.46976 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46851 * 300.00328 * 1 2 3 28 28 H 1.08995 * 109.47240 * 59.99673 * 1 2 3 29 29 H 1.08990 * 109.46859 * 239.99651 * 2 1 3 30 30 H 1.09000 * 109.46891 * 119.99691 * 2 1 3 31 31 H 0.96999 * 119.99935 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.40902 * 204.53669 * 18 16 14 33 33 H 1.09002 * 110.40105 * 326.96447 * 18 16 14 34 34 H 1.09007 * 110.40714 * 118.79001 * 19 18 16 35 35 H 1.08999 * 110.40710 * 241.09651 * 19 18 16 36 36 H 1.08999 * 109.47397 * 173.35393 * 25 24 20 37 37 H 1.09001 * 109.46756 * 293.35268 * 25 24 20 38 38 H 1.09000 * 109.46998 * 53.34434 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6322 1.9720 -0.8610 5 6 3.5451 1.4432 -0.0767 6 1 4.1278 1.8169 0.7522 7 6 4.1781 0.9666 -1.2051 8 7 3.4784 0.6865 -2.2828 9 14 6.0296 0.7186 -1.2029 10 1 6.3498 -0.6148 -0.6332 11 1 6.5412 0.7980 -2.5948 12 1 6.6696 1.7755 -0.3792 13 7 1.6135 2.1113 1.2316 14 6 0.8335 3.2089 1.1576 15 8 0.4609 3.6252 0.0818 16 6 0.4287 3.9163 2.4362 17 1 0.1180 4.9469 2.2647 18 6 -0.6758 3.0625 3.1055 19 6 0.0928 2.0158 3.9400 20 6 1.5864 2.3400 3.6938 21 1 2.2161 2.0995 4.5504 22 6 2.0012 1.6186 2.4255 23 8 2.6729 0.6111 2.4845 24 7 1.5831 3.7951 3.3715 25 6 2.8360 4.1919 2.7152 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9237 0.3515 -3.0767 32 1 -1.2964 3.6829 3.7520 33 1 -1.2869 2.5708 2.3486 34 1 -0.1492 2.1207 4.9976 35 1 -0.1415 1.0086 3.5955 36 1 2.7610 5.2280 2.3853 37 1 3.6620 4.0936 3.4196 38 1 3.0146 3.5482 1.8539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704580572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:20 Heat of formation + Delta-G solvation = -64.799319 kcal Electronic energy + Delta-G solvation = -22451.998417 eV Core-core repulsion = 19294.370396 eV Total energy + Delta-G solvation = -3157.628021 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.43725 -39.68633 -39.12833 -36.91421 -34.74038 -33.58171 -33.13653 -30.72810 -29.36934 -26.97045 -25.70386 -24.61455 -23.98699 -22.27045 -21.84835 -19.19054 -19.00674 -18.54925 -17.85272 -17.22777 -16.77292 -16.67269 -15.91378 -15.71856 -15.04764 -14.94510 -14.68346 -14.45179 -14.33655 -13.97481 -13.67572 -13.48660 -13.24883 -13.03244 -12.75326 -12.70104 -12.48429 -12.40401 -12.35244 -12.16857 -12.07217 -12.00267 -11.74914 -11.38376 -10.84604 -10.58348 -10.23530 -9.69213 -8.28839 -6.37987 0.59388 1.30195 1.33612 1.41379 1.69032 1.82593 2.33288 2.76112 2.78725 3.01997 3.39119 3.50765 3.66354 4.13627 4.24042 4.26633 4.30156 4.33709 4.40944 4.45903 4.50928 4.59147 4.77434 4.85750 4.89493 4.90312 5.00872 5.07435 5.08203 5.13086 5.33618 5.41030 5.46499 5.54982 5.69529 5.93134 6.28269 6.60324 6.71701 6.91908 7.28606 8.79261 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.008472 C = 0.007808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.920693 B = 3304.123724 C = 3585.302707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.120 4.120 3 C 0.260 3.740 4 H 0.029 0.971 5 C -0.529 4.529 6 H 0.045 0.955 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.270 1.270 13 N -0.557 5.557 14 C 0.483 3.517 15 O -0.543 6.543 16 C 0.046 3.954 17 H 0.164 0.836 18 C -0.110 4.110 19 C -0.110 4.110 20 C 0.044 3.956 21 H 0.163 0.837 22 C 0.487 3.513 23 O -0.514 6.514 24 N -0.462 5.462 25 C -0.019 4.019 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.266 0.734 32 H 0.136 0.864 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 5.285 14.903 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.160 3.840 4 H 0.047 0.953 5 C -0.568 4.568 6 H 0.063 0.937 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.195 1.195 13 N -0.299 5.299 14 C 0.273 3.727 15 O -0.418 6.418 16 C -0.065 4.065 17 H 0.181 0.819 18 C -0.148 4.148 19 C -0.148 4.148 20 C -0.068 4.068 21 H 0.180 0.820 22 C 0.276 3.724 23 O -0.386 6.386 24 N -0.186 5.186 25 C -0.168 4.168 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -7.802 5.246 14.645 17.403 hybrid contribution 1.525 -0.892 -1.851 2.559 sum -6.277 4.354 12.794 14.901 Atomic orbital electron populations 1.21662 0.95908 1.01270 1.00104 1.21702 0.94680 0.98178 1.01332 1.18791 0.94120 0.89929 0.81197 0.95324 1.21249 0.91240 1.42907 1.01389 0.93680 1.25641 1.02994 0.95007 0.94474 1.70064 1.37625 1.44758 1.02700 0.85568 0.79859 0.78786 0.77456 1.20044 1.20127 1.19489 1.47467 1.45335 1.27041 1.10012 1.23217 0.76080 0.79748 0.93611 1.90656 1.52973 1.65020 1.33138 1.24173 0.94461 1.02659 0.85200 0.81850 1.22542 0.95791 0.96981 0.99460 1.22533 0.88603 0.99105 1.04565 1.24190 1.02144 0.86856 0.93570 0.81962 1.22920 0.78039 0.85137 0.86289 1.90653 1.35193 1.25506 1.87218 1.66050 1.02736 1.14822 1.34989 1.22962 0.92693 1.02389 0.98745 0.91607 0.93675 0.94517 0.92706 0.92806 0.92448 0.84597 0.91178 0.84714 0.91131 0.88888 0.88604 0.96587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 9.78 71.98 0.70 -4.78 16 2 C -0.12 -6.11 5.13 30.60 0.16 -5.95 16 3 C 0.26 14.05 1.81 44.25 0.08 14.13 16 4 H 0.03 1.79 6.83 -2.39 -0.02 1.78 16 5 C -0.53 -30.93 7.62 25.60 0.20 -30.74 16 6 H 0.04 2.67 7.10 -2.91 -0.02 2.65 16 7 C 0.02 1.11 5.18 84.66 0.44 1.54 16 8 N -0.91 -54.94 12.16 21.45 0.26 -54.68 16 9 Si 0.96 46.07 29.55 68.60 2.03 48.09 16 10 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.56 -24.24 0.94 -734.53 -0.69 -24.93 16 14 C 0.48 18.83 5.29 87.94 0.46 19.29 16 15 O -0.54 -25.62 16.44 -2.86 -0.05 -25.67 16 16 C 0.05 1.16 4.14 44.67 0.18 1.35 16 17 H 0.16 3.36 8.14 -2.38 -0.02 3.34 16 18 C -0.11 -1.97 6.42 31.68 0.20 -1.77 16 19 C -0.11 -1.98 6.42 31.67 0.20 -1.78 16 20 C 0.04 1.11 4.14 44.69 0.19 1.29 16 21 H 0.16 3.39 8.14 -2.39 -0.02 3.37 16 22 C 0.49 18.90 4.41 87.96 0.39 19.29 16 23 O -0.51 -23.96 14.13 -2.87 -0.04 -24.00 16 24 N -0.46 -11.18 5.73 -858.69 -4.92 -16.10 16 25 C -0.02 -0.55 8.96 127.69 1.14 0.59 16 26 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.04 1.70 7.69 -2.38 -0.02 1.68 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 3.09 6.84 -2.39 -0.02 3.07 16 30 H 0.05 2.79 5.99 -2.39 -0.01 2.77 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.44 7.86 -2.39 -0.02 1.42 16 34 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.07 1.45 7.87 -2.39 -0.02 1.43 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.02 0.62 4.74 -2.39 -0.01 0.61 16 Total: -1.00 -75.26 297.94 2.00 -73.26 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.06 Total: 11.56 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 4.35 Total: 12.46 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -5.35 Total: -95.71 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.09 Total: -49.67 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -75.26 2.00 -73.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704580572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.461 kcal (2) G-P(sol) polarization free energy of solvation -75.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds