Wall clock time and date at job start Mon Mar 30 2020 05:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47087 * 2 1 4 4 H 1.08997 * 109.47429 * 54.81099 * 3 2 1 5 5 C 1.50705 * 109.46702 * 174.81141 * 3 2 1 6 6 H 1.07996 * 119.99490 * 114.55822 * 5 3 2 7 7 C 1.37877 * 120.00027 * 294.55404 * 5 3 2 8 8 N 1.31512 * 120.00053 * 350.48840 * 7 5 3 9 9 Si 1.86799 * 119.99698 * 170.48970 * 7 5 3 10 10 H 1.48495 * 109.47499 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47217 * 119.99982 * 9 7 5 12 12 H 1.48502 * 109.46748 * 239.99675 * 9 7 5 13 13 C 1.50695 * 109.47159 * 294.80941 * 3 2 1 14 14 O 1.21335 * 120.00165 * 270.00377 * 13 3 2 15 15 C 1.46558 * 119.99885 * 90.00042 * 13 3 2 16 16 N 1.31889 * 125.88814 * 359.97438 * 15 13 3 17 17 C 1.32862 * 109.08181 * 180.02562 * 16 15 13 18 18 C 1.35842 * 108.39335 * 359.72829 * 17 16 15 19 19 N 1.35223 * 107.19946 * 0.43007 * 18 17 16 20 20 C 1.46495 * 126.44978 * 179.84666 * 19 18 17 21 21 C 1.53004 * 109.46947 * 264.68536 * 20 19 18 22 22 O 1.42902 * 109.46935 * 180.02562 * 21 20 19 23 23 C 1.42901 * 113.99863 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47264 * 186.19033 * 1 2 3 25 25 H 1.09002 * 109.46948 * 306.18835 * 1 2 3 26 26 H 1.09001 * 109.47244 * 66.18593 * 1 2 3 27 27 H 1.08998 * 109.46590 * 240.00069 * 2 1 3 28 28 H 1.08998 * 109.47005 * 120.00286 * 2 1 3 29 29 H 0.96998 * 120.00253 * 180.02562 * 8 7 5 30 30 H 1.08001 * 125.80314 * 179.97438 * 17 16 15 31 31 H 1.08000 * 126.39790 * 180.26955 * 18 17 16 32 32 H 1.09004 * 109.47147 * 144.68523 * 20 19 18 33 33 H 1.09004 * 109.47424 * 24.68622 * 20 19 18 34 34 H 1.08996 * 109.47280 * 59.99707 * 21 20 19 35 35 H 1.08996 * 109.46804 * 299.99731 * 21 20 19 36 36 H 1.08998 * 109.46791 * 299.99706 * 23 22 21 37 37 H 1.08997 * 109.47476 * 59.99428 * 23 22 21 38 38 H 1.09001 * 109.47023 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9825 0.8398 5 6 3.5416 1.4443 0.1285 6 1 4.1526 1.8079 -0.6844 7 6 4.1352 0.9819 1.2839 8 7 3.3987 0.7158 2.3404 9 14 5.9855 0.7335 1.3483 10 1 6.5803 1.1018 0.0385 11 1 6.5633 1.5916 2.4137 12 1 6.2836 -0.6909 1.6439 13 6 1.6454 2.1148 -1.2896 14 8 2.3857 2.0675 -2.2498 15 6 0.3673 2.8257 -1.3842 16 7 -0.5220 2.9492 -0.4181 17 6 -1.5541 3.6561 -0.8655 18 6 -1.3110 3.9990 -2.1573 19 7 -0.1095 3.4758 -2.4905 20 6 0.5591 3.5888 -3.7891 21 6 0.2480 2.3506 -4.6323 22 8 0.9007 2.4606 -5.8988 23 6 0.6734 1.3496 -6.7683 24 1 -0.3634 -1.0217 0.1108 25 1 -0.3633 0.6068 0.8294 26 1 -0.3634 0.4149 -0.9402 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8164 0.3909 3.1534 30 1 -2.4347 3.9175 -0.2974 31 1 -1.9579 4.5787 -2.7991 32 1 1.6360 3.6644 -3.6380 33 1 0.2014 4.4795 -4.3057 34 1 -0.8288 2.2750 -4.7834 35 1 0.6059 1.4601 -4.1158 36 1 1.0393 0.4379 -6.2960 37 1 -0.3946 1.2538 -6.9640 38 1 1.2025 1.5092 -7.7078 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705263005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:00 Heat of formation + Delta-G solvation = -24.981129 kcal Electronic energy + Delta-G solvation = -20817.368600 eV Core-core repulsion = 17661.467225 eV Total energy + Delta-G solvation = -3155.901375 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.97313 -38.29588 -38.07150 -34.71336 -33.93612 -31.68152 -29.84445 -29.23596 -27.65166 -26.42543 -24.38975 -23.38011 -22.42551 -21.31413 -20.18121 -18.44883 -17.19169 -16.42276 -16.19074 -16.12386 -15.55695 -15.15346 -14.60067 -14.54764 -14.16725 -13.70072 -13.45494 -13.18878 -13.08879 -12.69265 -12.27680 -12.20210 -11.65968 -11.50999 -11.47823 -11.35936 -10.85760 -10.60553 -10.24102 -9.99619 -9.90311 -9.85500 -9.64980 -9.55654 -8.95435 -8.63560 -8.32569 -8.21822 -6.02642 -4.03990 1.60164 2.60173 2.87227 3.33167 3.41140 3.47900 3.73333 3.91152 4.43705 4.61079 4.68274 4.80899 4.89477 5.06793 5.16256 5.22938 5.30831 5.41845 5.48060 5.49126 5.61552 5.74801 6.17101 6.26718 6.33149 6.48246 6.62301 6.83735 6.87658 6.93166 7.13603 7.17024 7.26731 7.61161 7.72142 7.94583 8.13217 8.28907 8.57453 9.00561 9.58545 11.06659 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.006260 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.777469 B = 4471.942951 C = 5288.117183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C 0.028 3.972 4 H 0.072 0.928 5 C -0.514 4.514 6 H 0.066 0.934 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.447 3.553 14 O -0.466 6.466 15 C 0.130 3.870 16 N -0.417 5.417 17 C -0.033 4.033 18 C -0.048 4.048 19 N -0.425 5.425 20 C 0.104 3.896 21 C 0.055 3.945 22 O -0.386 6.386 23 C 0.034 3.966 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.086 0.914 29 H 0.261 0.739 30 H 0.173 0.827 31 H 0.175 0.825 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 3.557 -12.307 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C 0.009 3.991 4 H 0.090 0.910 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.323 3.677 14 O -0.338 6.338 15 C -0.127 4.127 16 N -0.138 5.138 17 C -0.187 4.187 18 C -0.185 4.185 19 N -0.107 5.107 20 C -0.019 4.019 21 C -0.022 4.022 22 O -0.304 6.304 23 C -0.063 4.063 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.190 0.810 31 H 0.193 0.807 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.601 3.271 -12.077 15.771 hybrid contribution 0.385 0.067 -0.682 0.786 sum -9.216 3.337 -12.759 16.089 Atomic orbital electron populations 1.21879 0.98040 0.99327 1.00903 1.21391 0.92550 0.97684 1.01949 1.19073 0.97460 0.93034 0.89542 0.90972 1.21073 0.89661 1.43060 1.01417 0.91548 1.24907 0.98213 0.95376 0.95121 1.69990 1.35367 1.44752 1.02040 0.86526 0.85559 0.77847 0.78098 1.19620 1.21048 1.20867 1.22688 0.78812 0.74281 0.91882 1.90414 1.50833 1.52571 1.39972 1.24632 1.00703 1.04401 0.82935 1.70412 1.00943 1.14796 1.27636 1.22497 0.99950 1.03116 0.93125 1.22873 0.89657 1.06389 0.99568 1.45366 1.15637 1.38466 1.11257 1.21728 1.00983 0.98530 0.80644 1.22655 0.96199 0.98560 0.84828 1.87786 1.73241 1.43518 1.25879 1.22764 1.00265 0.89233 0.93996 0.94929 0.91823 0.95131 0.94570 0.89556 0.92888 0.80961 0.80739 0.86497 0.88473 0.93075 0.91849 0.93580 0.94117 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.67 37.16 0.32 -2.62 16 2 C -0.10 -2.32 5.28 -26.73 -0.14 -2.46 16 3 C 0.03 0.73 1.81 -92.93 -0.17 0.56 16 4 H 0.07 2.00 7.84 -51.93 -0.41 1.59 16 5 C -0.51 -14.50 8.27 -34.44 -0.28 -14.78 16 6 H 0.07 1.93 7.10 -52.49 -0.37 1.56 16 7 C 0.07 1.84 5.16 -17.82 -0.09 1.75 16 8 N -0.88 -25.20 12.16 55.43 0.67 -24.53 16 9 Si 0.89 21.61 29.55 -169.99 -5.02 16.59 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.45 10.33 5.70 -30.96 -0.18 10.15 16 14 O -0.47 -11.13 14.07 5.51 0.08 -11.06 16 15 C 0.13 2.58 6.47 -154.46 -1.00 1.58 16 16 N -0.42 -8.07 9.60 -11.39 -0.11 -8.18 16 17 C -0.03 -0.49 11.85 -17.96 -0.21 -0.70 16 18 C -0.05 -0.62 11.53 -16.92 -0.19 -0.82 16 19 N -0.42 -6.76 2.76 -114.72 -0.32 -7.07 16 20 C 0.10 1.45 5.82 -4.04 -0.02 1.43 16 21 C 0.06 0.75 6.26 37.16 0.23 0.98 16 22 O -0.39 -5.18 10.70 -35.23 -0.38 -5.56 16 23 C 0.03 0.34 11.01 101.05 1.11 1.45 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.34 7.90 -51.93 -0.41 0.93 16 26 H 0.03 0.60 6.53 -51.93 -0.34 0.26 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 2.23 6.80 -51.93 -0.35 1.88 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.12 1.91 6.64 -51.93 -0.34 1.56 16 33 H 0.10 1.05 8.13 -51.93 -0.42 0.63 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 1.01 7.84 -51.93 -0.41 0.60 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -31.55 320.05 -6.45 -38.00 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.57 Total: 0.46 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.63 Total: -3.48 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.25 Total: -39.79 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.30 Total: -16.62 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.55 -6.45 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705263005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.020 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds