Wall clock time and date at job start Mon Mar 30 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47087 * 2 1 4 4 H 1.08997 * 109.47429 * 54.81099 * 3 2 1 5 5 C 1.50705 * 109.46702 * 174.81141 * 3 2 1 6 6 H 1.07996 * 119.99490 * 114.55822 * 5 3 2 7 7 C 1.37877 * 120.00027 * 294.55404 * 5 3 2 8 8 N 1.31512 * 120.00053 * 350.48840 * 7 5 3 9 9 Si 1.86799 * 119.99698 * 170.48970 * 7 5 3 10 10 H 1.48495 * 109.47499 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47217 * 119.99982 * 9 7 5 12 12 H 1.48502 * 109.46748 * 239.99675 * 9 7 5 13 13 C 1.50695 * 109.47159 * 294.80941 * 3 2 1 14 14 O 1.21335 * 120.00165 * 270.00377 * 13 3 2 15 15 C 1.46558 * 119.99885 * 90.00042 * 13 3 2 16 16 N 1.31889 * 125.88814 * 359.97438 * 15 13 3 17 17 C 1.32862 * 109.08181 * 180.02562 * 16 15 13 18 18 C 1.35842 * 108.39335 * 359.72829 * 17 16 15 19 19 N 1.35223 * 107.19946 * 0.43007 * 18 17 16 20 20 C 1.46495 * 126.44978 * 179.84666 * 19 18 17 21 21 C 1.53004 * 109.46947 * 264.68536 * 20 19 18 22 22 O 1.42902 * 109.46935 * 180.02562 * 21 20 19 23 23 C 1.42901 * 113.99863 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47264 * 186.19033 * 1 2 3 25 25 H 1.09002 * 109.46948 * 306.18835 * 1 2 3 26 26 H 1.09001 * 109.47244 * 66.18593 * 1 2 3 27 27 H 1.08998 * 109.46590 * 240.00069 * 2 1 3 28 28 H 1.08998 * 109.47005 * 120.00286 * 2 1 3 29 29 H 0.96998 * 120.00253 * 180.02562 * 8 7 5 30 30 H 1.08001 * 125.80314 * 179.97438 * 17 16 15 31 31 H 1.08000 * 126.39790 * 180.26955 * 18 17 16 32 32 H 1.09004 * 109.47147 * 144.68523 * 20 19 18 33 33 H 1.09004 * 109.47424 * 24.68622 * 20 19 18 34 34 H 1.08996 * 109.47280 * 59.99707 * 21 20 19 35 35 H 1.08996 * 109.46804 * 299.99731 * 21 20 19 36 36 H 1.08998 * 109.46791 * 299.99706 * 23 22 21 37 37 H 1.08997 * 109.47476 * 59.99428 * 23 22 21 38 38 H 1.09001 * 109.47023 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9825 0.8398 5 6 3.5416 1.4443 0.1285 6 1 4.1526 1.8079 -0.6844 7 6 4.1352 0.9819 1.2839 8 7 3.3987 0.7158 2.3404 9 14 5.9855 0.7335 1.3483 10 1 6.5803 1.1018 0.0385 11 1 6.5633 1.5916 2.4137 12 1 6.2836 -0.6909 1.6439 13 6 1.6454 2.1148 -1.2896 14 8 2.3857 2.0675 -2.2498 15 6 0.3673 2.8257 -1.3842 16 7 -0.5220 2.9492 -0.4181 17 6 -1.5541 3.6561 -0.8655 18 6 -1.3110 3.9990 -2.1573 19 7 -0.1095 3.4758 -2.4905 20 6 0.5591 3.5888 -3.7891 21 6 0.2480 2.3506 -4.6323 22 8 0.9007 2.4606 -5.8988 23 6 0.6734 1.3496 -6.7683 24 1 -0.3634 -1.0217 0.1108 25 1 -0.3633 0.6068 0.8294 26 1 -0.3634 0.4149 -0.9402 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8164 0.3909 3.1534 30 1 -2.4347 3.9175 -0.2974 31 1 -1.9579 4.5787 -2.7991 32 1 1.6360 3.6644 -3.6380 33 1 0.2014 4.4795 -4.3057 34 1 -0.8288 2.2750 -4.7834 35 1 0.6059 1.4601 -4.1158 36 1 1.0393 0.4379 -6.2960 37 1 -0.3946 1.2538 -6.9640 38 1 1.2025 1.5092 -7.7078 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705263005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:59 Heat of formation + Delta-G solvation = -45.062094 kcal Electronic energy + Delta-G solvation = -20818.239376 eV Core-core repulsion = 17661.467225 eV Total energy + Delta-G solvation = -3156.772151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.25059 -40.04055 -39.06252 -36.41752 -35.39638 -33.71635 -31.08558 -30.45159 -29.56260 -27.32036 -26.15850 -24.71187 -24.00797 -22.66663 -21.69710 -20.03902 -18.63738 -18.17874 -17.51048 -17.13854 -16.93000 -16.71171 -16.20787 -15.84628 -15.66898 -15.15224 -14.83596 -14.63695 -14.41885 -14.17704 -14.01946 -13.41276 -13.34975 -13.20606 -12.82737 -12.67432 -12.55387 -12.38215 -12.15074 -11.94290 -11.71805 -11.07754 -10.98756 -10.86784 -10.81998 -10.51938 -10.36929 -9.44102 -8.18009 -6.26754 0.15651 1.38482 1.40115 1.43315 1.52420 1.57835 2.36748 2.44114 2.75832 3.12226 3.22136 3.57472 3.76493 3.83039 4.07962 4.28480 4.32282 4.41834 4.46087 4.47769 4.51716 4.54958 4.62823 4.64919 4.76802 4.77814 5.04395 5.22517 5.27809 5.41460 5.58885 5.70004 5.72608 5.83640 5.89202 6.00899 6.16840 6.61388 6.80036 7.08129 7.38928 8.91225 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.006260 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.777469 B = 4471.942951 C = 5288.117183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C 0.026 3.974 4 H 0.043 0.957 5 C -0.539 4.539 6 H 0.047 0.953 7 C 0.024 3.976 8 N -0.907 5.907 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.275 1.275 12 H -0.272 1.272 13 C 0.447 3.553 14 O -0.490 6.490 15 C 0.079 3.921 16 N -0.443 5.443 17 C -0.049 4.049 18 C -0.004 4.004 19 N -0.418 5.418 20 C 0.102 3.898 21 C 0.063 3.937 22 O -0.403 6.403 23 C 0.026 3.974 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.266 0.734 30 H 0.207 0.793 31 H 0.234 0.766 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.441 4.615 -13.843 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.129 4.129 3 C 0.007 3.993 4 H 0.061 0.939 5 C -0.576 4.576 6 H 0.066 0.934 7 C -0.176 4.176 8 N -0.545 5.545 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.200 1.200 12 H -0.197 1.197 13 C 0.326 3.674 14 O -0.365 6.365 15 C -0.174 4.174 16 N -0.165 5.165 17 C -0.204 4.204 18 C -0.142 4.142 19 N -0.100 5.100 20 C -0.020 4.020 21 C -0.014 4.014 22 O -0.322 6.322 23 C -0.069 4.069 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.224 0.776 31 H 0.250 0.750 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.654 4.311 -13.611 18.430 hybrid contribution 0.901 -0.175 -0.252 0.952 sum -10.753 4.136 -13.863 18.025 Atomic orbital electron populations 1.21671 0.95166 1.00637 1.00828 1.21227 0.95027 0.96368 1.00256 1.18911 0.95976 0.94025 0.90436 0.93877 1.21265 0.91337 1.43804 1.01242 0.93428 1.25622 1.02497 0.94848 0.94631 1.70077 1.37073 1.44933 1.02415 0.85585 0.80358 0.78293 0.77938 1.19993 1.20033 1.19717 1.22197 0.80442 0.74366 0.90439 1.90384 1.52151 1.53839 1.40110 1.23531 1.00412 1.08211 0.85227 1.70324 1.02110 1.15582 1.28461 1.23216 0.99957 1.02716 0.94478 1.23812 0.87898 1.03196 0.99331 1.45451 1.16325 1.37358 1.10850 1.21850 0.99475 1.00594 0.80082 1.22525 0.97440 0.96796 0.84674 1.87758 1.73764 1.44783 1.25882 1.22993 1.02007 0.87965 0.93970 0.92546 0.92703 0.94504 0.95148 0.92089 0.92501 0.77626 0.74950 0.89676 0.84205 0.90366 0.95339 0.94530 0.91963 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 8.67 71.98 0.62 -4.57 16 2 C -0.09 -4.50 5.28 30.59 0.16 -4.34 16 3 C 0.03 1.42 1.81 -12.29 -0.02 1.40 16 4 H 0.04 2.55 7.84 -2.39 -0.02 2.53 16 5 C -0.54 -31.97 8.27 25.60 0.21 -31.75 16 6 H 0.05 2.93 7.10 -2.91 -0.02 2.91 16 7 C 0.02 1.40 5.16 84.66 0.44 1.83 16 8 N -0.91 -53.33 12.16 21.45 0.26 -53.07 16 9 Si 0.95 45.44 29.55 68.60 2.03 47.47 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.45 21.66 5.70 27.86 0.16 21.82 16 14 O -0.49 -24.82 14.07 -3.20 -0.05 -24.87 16 15 C 0.08 3.17 6.47 135.88 0.88 4.04 16 16 N -0.44 -16.89 9.60 -189.93 -1.82 -18.71 16 17 C -0.05 -1.31 11.85 83.98 1.00 -0.32 16 18 C 0.00 -0.08 11.53 83.61 0.96 0.88 16 19 N -0.42 -12.42 2.76 -516.88 -1.43 -13.84 16 20 C 0.10 2.67 5.82 86.38 0.50 3.18 16 21 C 0.06 1.62 6.26 71.98 0.45 2.07 16 22 O -0.40 -10.25 10.70 -148.98 -1.59 -11.84 16 23 C 0.03 0.49 11.01 113.37 1.25 1.74 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.05 2.35 7.90 -2.39 -0.02 2.33 16 26 H 0.04 1.46 6.53 -2.39 -0.02 1.44 16 27 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 3.30 6.80 -2.39 -0.02 3.28 16 29 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.21 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.23 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.08 2.82 6.64 -2.39 -0.02 2.81 16 33 H 0.14 2.45 8.13 -2.38 -0.02 2.43 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.03 0.92 7.84 -2.39 -0.02 0.90 16 36 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -73.41 320.05 5.05 -68.36 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.04 Total: 10.53 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 6.61 Total: -4.02 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -2.99 Total: -85.62 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -1.64 Total: -36.71 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.41 5.05 -68.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705263005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.296 kcal (2) G-P(sol) polarization free energy of solvation -73.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds