Wall clock time and date at job start Mon Mar 30 2020 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 H 1.09006 * 109.46644 * 305.87624 * 3 2 1 5 5 C 1.50704 * 109.47180 * 185.87824 * 3 2 1 6 6 H 1.07999 * 119.99844 * 335.09899 * 5 3 2 7 7 C 1.37884 * 119.99754 * 155.10279 * 5 3 2 8 8 N 1.31517 * 119.99971 * 355.56426 * 7 5 3 9 9 Si 1.86796 * 119.99400 * 175.56743 * 7 5 3 10 10 H 1.48501 * 109.47408 * 60.00117 * 9 7 5 11 11 H 1.48501 * 109.46587 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47314 * 299.99478 * 9 7 5 13 13 C 1.50697 * 109.47141 * 65.87333 * 3 2 1 14 14 O 1.21333 * 119.99822 * 95.00562 * 13 3 2 15 15 C 1.46556 * 120.00543 * 275.00098 * 13 3 2 16 16 N 1.31891 * 125.88581 * 0.02908 * 15 13 3 17 17 C 1.32863 * 109.08462 * 179.97438 * 16 15 13 18 18 C 1.35836 * 108.39084 * 359.97438 * 17 16 15 19 19 N 1.35235 * 107.20208 * 359.77594 * 18 17 16 20 20 C 1.46496 * 126.45211 * 180.21888 * 19 18 17 21 21 C 1.52999 * 109.46720 * 265.16771 * 20 19 18 22 22 O 1.42906 * 109.46917 * 179.97438 * 21 20 19 23 23 C 1.42900 * 114.00088 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.46843 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47332 * 299.99993 * 1 2 3 26 26 H 1.08997 * 109.47023 * 60.00705 * 1 2 3 27 27 H 1.09002 * 109.47716 * 239.99745 * 2 1 3 28 28 H 1.09001 * 109.47512 * 119.99260 * 2 1 3 29 29 H 0.96994 * 119.99981 * 5.53112 * 8 7 5 30 30 H 1.07998 * 125.80251 * 179.97438 * 17 16 15 31 31 H 1.08001 * 126.39552 * 179.97438 * 18 17 16 32 32 H 1.08999 * 109.46736 * 25.16186 * 20 19 18 33 33 H 1.08998 * 109.47427 * 145.16667 * 20 19 18 34 34 H 1.08994 * 109.47485 * 299.99261 * 21 20 19 35 35 H 1.08999 * 109.47926 * 60.00128 * 21 20 19 36 36 H 1.09004 * 109.46971 * 180.02562 * 23 22 21 37 37 H 1.09005 * 109.47207 * 300.00182 * 23 22 21 38 38 H 1.08992 * 109.47328 * 60.00170 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5932 1.9858 -0.8328 5 6 3.5400 1.4451 -0.1455 6 1 4.1141 0.5847 0.1651 7 6 4.1793 2.5459 -0.6752 8 7 3.4754 3.5578 -1.1337 9 14 6.0454 2.5999 -0.7414 10 1 6.5447 1.4664 -1.5606 11 1 6.4820 3.8813 -1.3519 12 1 6.5928 2.4949 0.6349 13 6 1.6599 2.1097 1.2967 14 8 2.4482 2.1372 2.2186 15 6 0.3382 2.7255 1.4442 16 7 -0.6045 2.7628 0.5225 17 6 -1.6636 3.4000 1.0099 18 6 -1.3860 3.7804 2.2840 19 7 -0.1332 3.3553 2.5644 20 6 0.5856 3.5379 3.8277 21 6 1.4623 4.7887 3.7394 22 8 2.1630 4.9672 4.9720 23 6 3.0156 6.1137 4.9952 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8935 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 2.5114 3.5658 -1.0270 30 1 -2.5880 3.5842 0.4827 31 1 -2.0443 4.3186 2.9500 32 1 -0.1316 3.6535 4.6403 33 1 1.2130 2.6671 4.0180 34 1 2.1795 4.6731 2.9269 35 1 0.8350 5.6595 3.5493 36 1 3.5113 6.1784 5.9638 37 1 3.7653 6.0251 4.2089 38 1 2.4208 7.0121 4.8304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705263008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:02 Heat of formation + Delta-G solvation = -26.654510 kcal Electronic energy + Delta-G solvation = -21103.605256 eV Core-core repulsion = 17947.631317 eV Total energy + Delta-G solvation = -3155.973938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.93118 -38.20735 -37.95330 -34.80411 -33.91065 -32.06703 -29.79035 -29.15785 -27.30204 -26.30428 -24.23380 -23.26693 -22.50504 -21.33535 -20.24099 -18.60630 -17.17215 -16.65901 -16.22832 -16.01168 -15.59373 -14.96867 -14.61795 -14.40208 -13.76858 -13.68317 -13.46674 -13.26261 -13.07404 -12.89480 -12.40127 -12.18475 -12.09863 -11.56343 -11.37124 -10.99972 -10.79154 -10.73735 -10.33664 -10.11118 -9.81435 -9.71869 -9.54117 -9.43758 -8.99273 -8.51300 -8.31277 -8.16254 -6.40026 -4.12347 1.68271 2.67566 2.93937 3.43947 3.48002 3.65123 3.83057 3.97933 4.50592 4.67850 4.70763 4.90480 4.95455 5.17156 5.28519 5.34302 5.38085 5.51827 5.58086 5.61878 5.72891 5.79822 5.99149 5.99477 6.16709 6.36375 6.63489 6.65849 6.81638 6.88665 6.93436 6.99760 7.20291 7.26576 7.34487 7.99382 8.20600 8.39799 8.64960 8.82180 9.58547 10.97914 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.013248 B = 0.008929 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.014058 B = 3135.009189 C = 4601.575973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C 0.008 3.992 4 H 0.070 0.930 5 C -0.578 4.578 6 H 0.056 0.944 7 C 0.022 3.978 8 N -0.906 5.906 9 Si 1.068 2.932 10 H -0.285 1.285 11 H -0.283 1.283 12 H -0.286 1.286 13 C 0.436 3.564 14 O -0.455 6.455 15 C 0.131 3.869 16 N -0.424 5.424 17 C -0.034 4.034 18 C -0.050 4.050 19 N -0.424 5.424 20 C 0.106 3.894 21 C 0.054 3.946 22 O -0.387 6.387 23 C 0.034 3.966 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.270 0.730 30 H 0.172 0.828 31 H 0.174 0.826 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 2.737 9.091 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.012 4.012 4 H 0.088 0.912 5 C -0.616 4.616 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.541 5.541 9 Si 0.896 3.104 10 H -0.212 1.212 11 H -0.208 1.208 12 H -0.213 1.213 13 C 0.310 3.690 14 O -0.326 6.326 15 C -0.125 4.125 16 N -0.145 5.145 17 C -0.188 4.188 18 C -0.188 4.188 19 N -0.107 5.107 20 C -0.017 4.017 21 C -0.024 4.024 22 O -0.306 6.306 23 C -0.063 4.063 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.189 0.811 31 H 0.192 0.808 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.192 3.197 8.590 11.061 hybrid contribution -1.648 -0.019 1.265 2.078 sum -7.840 3.178 9.855 12.988 Atomic orbital electron populations 1.21923 0.96841 0.99281 1.02429 1.21335 0.94010 0.96787 1.01205 1.19261 0.98062 0.92982 0.90911 0.91208 1.21755 0.89903 1.04271 1.45625 0.92584 1.25909 1.07163 0.92535 0.92653 1.70803 1.08989 1.32620 1.41683 0.83561 0.74125 0.76180 0.76560 1.21155 1.20804 1.21258 1.23434 0.79259 0.74562 0.91716 1.90392 1.49961 1.50332 1.41886 1.24962 1.00086 1.04376 0.83098 1.70392 0.99829 1.16273 1.27978 1.22457 0.99456 1.03814 0.93068 1.22858 0.88241 1.07424 1.00250 1.45425 1.12404 1.40178 1.12668 1.21702 0.96191 1.00739 0.83044 1.22670 0.95501 0.96356 0.87874 1.87752 1.60680 1.47373 1.34747 1.22766 0.93473 0.87236 1.02801 0.94681 0.93463 0.92049 0.91607 0.93610 0.91859 0.81057 0.80835 0.88593 0.86709 0.91478 0.93124 0.89348 0.93397 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.66 37.16 0.32 -2.47 16 2 C -0.10 -2.08 5.36 -26.73 -0.14 -2.22 16 3 C 0.01 0.20 1.62 -92.92 -0.15 0.05 16 4 H 0.07 1.90 6.57 -51.93 -0.34 1.56 16 5 C -0.58 -16.33 7.69 -34.44 -0.26 -16.59 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 8 N -0.91 -27.33 13.62 55.43 0.76 -26.57 16 9 Si 1.07 25.60 29.91 -169.99 -5.08 20.52 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.44 10.59 5.91 -30.96 -0.18 10.41 16 14 O -0.46 -11.72 14.39 5.51 0.08 -11.64 16 15 C 0.13 2.76 6.37 -154.46 -0.98 1.78 16 16 N -0.42 -8.45 8.96 -11.39 -0.10 -8.55 16 17 C -0.03 -0.54 11.85 -17.97 -0.21 -0.75 16 18 C -0.05 -0.72 11.53 -16.91 -0.19 -0.91 16 19 N -0.42 -7.31 2.76 -114.73 -0.32 -7.63 16 20 C 0.11 1.64 5.82 -4.04 -0.02 1.62 16 21 C 0.05 0.86 6.25 37.16 0.23 1.09 16 22 O -0.39 -5.95 10.70 -35.23 -0.38 -6.33 16 23 C 0.03 0.41 11.01 101.05 1.11 1.52 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.92 5.51 -51.93 -0.29 0.63 16 26 H 0.06 1.17 8.05 -51.93 -0.42 0.76 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.27 8.19 6.67 -40.82 -0.27 7.92 16 30 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 32 H 0.10 1.15 8.13 -51.93 -0.42 0.72 16 33 H 0.11 2.01 6.64 -51.93 -0.35 1.66 16 34 H 0.07 1.32 7.83 -51.93 -0.41 0.91 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -32.80 319.52 -6.32 -39.12 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.50 Total: 2.21 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.59 Total: -5.93 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.34 Total: -42.76 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.30 Total: -17.97 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.52 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.80 -6.32 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705263008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.466 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds