Wall clock time and date at job start Mon Mar 30 2020 05:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 H 1.09006 * 109.46644 * 305.87624 * 3 2 1 5 5 C 1.50704 * 109.47180 * 185.87824 * 3 2 1 6 6 H 1.07999 * 119.99844 * 335.09899 * 5 3 2 7 7 C 1.37884 * 119.99754 * 155.10279 * 5 3 2 8 8 N 1.31517 * 119.99971 * 355.56426 * 7 5 3 9 9 Si 1.86796 * 119.99400 * 175.56743 * 7 5 3 10 10 H 1.48501 * 109.47408 * 60.00117 * 9 7 5 11 11 H 1.48501 * 109.46587 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47314 * 299.99478 * 9 7 5 13 13 C 1.50697 * 109.47141 * 65.87333 * 3 2 1 14 14 O 1.21333 * 119.99822 * 95.00562 * 13 3 2 15 15 C 1.46556 * 120.00543 * 275.00098 * 13 3 2 16 16 N 1.31891 * 125.88581 * 0.02908 * 15 13 3 17 17 C 1.32863 * 109.08462 * 179.97438 * 16 15 13 18 18 C 1.35836 * 108.39084 * 359.97438 * 17 16 15 19 19 N 1.35235 * 107.20208 * 359.77594 * 18 17 16 20 20 C 1.46496 * 126.45211 * 180.21888 * 19 18 17 21 21 C 1.52999 * 109.46720 * 265.16771 * 20 19 18 22 22 O 1.42906 * 109.46917 * 179.97438 * 21 20 19 23 23 C 1.42900 * 114.00088 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.46843 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47332 * 299.99993 * 1 2 3 26 26 H 1.08997 * 109.47023 * 60.00705 * 1 2 3 27 27 H 1.09002 * 109.47716 * 239.99745 * 2 1 3 28 28 H 1.09001 * 109.47512 * 119.99260 * 2 1 3 29 29 H 0.96994 * 119.99981 * 5.53112 * 8 7 5 30 30 H 1.07998 * 125.80251 * 179.97438 * 17 16 15 31 31 H 1.08001 * 126.39552 * 179.97438 * 18 17 16 32 32 H 1.08999 * 109.46736 * 25.16186 * 20 19 18 33 33 H 1.08998 * 109.47427 * 145.16667 * 20 19 18 34 34 H 1.08994 * 109.47485 * 299.99261 * 21 20 19 35 35 H 1.08999 * 109.47926 * 60.00128 * 21 20 19 36 36 H 1.09004 * 109.46971 * 180.02562 * 23 22 21 37 37 H 1.09005 * 109.47207 * 300.00182 * 23 22 21 38 38 H 1.08992 * 109.47328 * 60.00170 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5932 1.9858 -0.8328 5 6 3.5400 1.4451 -0.1455 6 1 4.1141 0.5847 0.1651 7 6 4.1793 2.5459 -0.6752 8 7 3.4754 3.5578 -1.1337 9 14 6.0454 2.5999 -0.7414 10 1 6.5447 1.4664 -1.5606 11 1 6.4820 3.8813 -1.3519 12 1 6.5928 2.4949 0.6349 13 6 1.6599 2.1097 1.2967 14 8 2.4482 2.1372 2.2186 15 6 0.3382 2.7255 1.4442 16 7 -0.6045 2.7628 0.5225 17 6 -1.6636 3.4000 1.0099 18 6 -1.3860 3.7804 2.2840 19 7 -0.1332 3.3553 2.5644 20 6 0.5856 3.5379 3.8277 21 6 1.4623 4.7887 3.7394 22 8 2.1630 4.9672 4.9720 23 6 3.0156 6.1137 4.9952 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8935 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 2.5114 3.5658 -1.0270 30 1 -2.5880 3.5842 0.4827 31 1 -2.0443 4.3186 2.9500 32 1 -0.1316 3.6535 4.6403 33 1 1.2130 2.6671 4.0180 34 1 2.1795 4.6731 2.9269 35 1 0.8350 5.6595 3.5493 36 1 3.5113 6.1784 5.9638 37 1 3.7653 6.0251 4.2089 38 1 2.4208 7.0121 4.8304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705263008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:02 Heat of formation + Delta-G solvation = -47.940594 kcal Electronic energy + Delta-G solvation = -21104.528290 eV Core-core repulsion = 17947.631317 eV Total energy + Delta-G solvation = -3156.896972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.29886 -40.04100 -39.13051 -36.55088 -35.42306 -34.06770 -31.12669 -30.47926 -29.17831 -27.37894 -26.06502 -24.76485 -24.12636 -22.74957 -21.76780 -20.30151 -18.76227 -18.52721 -17.50910 -17.21084 -17.02420 -16.45917 -16.08051 -15.85948 -15.67095 -15.20067 -15.08223 -14.82091 -14.48215 -14.24606 -14.17218 -14.00171 -13.29613 -12.88441 -12.76045 -12.63114 -12.56881 -12.45839 -12.05644 -11.97974 -11.50779 -11.10642 -11.01738 -10.91257 -10.85094 -10.54125 -10.35808 -9.46953 -8.68362 -6.40190 0.15734 1.36978 1.47594 1.57084 1.57269 1.75109 2.36578 2.50813 2.67360 3.04471 3.33013 3.50592 3.70384 3.78873 3.99309 4.22075 4.23781 4.29399 4.35555 4.37390 4.40657 4.45777 4.50843 4.58961 4.70224 4.73817 4.94572 5.09572 5.15793 5.19616 5.44112 5.49555 5.69220 5.82231 5.92035 5.93817 6.11578 6.51785 6.64431 7.04293 7.37917 8.69550 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.013248 B = 0.008929 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.014058 B = 3135.009189 C = 4601.575973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C 0.001 3.999 4 H 0.045 0.955 5 C -0.592 4.592 6 H 0.047 0.953 7 C -0.027 4.027 8 N -0.930 5.930 9 Si 1.109 2.891 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.436 3.564 14 O -0.489 6.489 15 C 0.078 3.922 16 N -0.441 5.441 17 C -0.050 4.050 18 C -0.009 4.009 19 N -0.420 5.420 20 C 0.106 3.894 21 C 0.063 3.937 22 O -0.399 6.399 23 C 0.026 3.974 24 H 0.064 0.936 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.256 0.744 30 H 0.209 0.791 31 H 0.233 0.767 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.016 0.984 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.029 0.971 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 3.523 10.615 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.130 4.130 3 C -0.019 4.019 4 H 0.063 0.937 5 C -0.629 4.629 6 H 0.065 0.935 7 C -0.226 4.226 8 N -0.567 5.567 9 Si 0.930 3.070 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.314 3.686 14 O -0.363 6.363 15 C -0.176 4.176 16 N -0.164 5.164 17 C -0.204 4.204 18 C -0.148 4.148 19 N -0.102 5.102 20 C -0.016 4.016 21 C -0.015 4.015 22 O -0.317 6.317 23 C -0.070 4.070 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.225 0.775 31 H 0.250 0.750 32 H 0.162 0.838 33 H 0.105 0.895 34 H 0.034 0.966 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.048 0.952 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.293 3.949 10.105 13.656 hybrid contribution -1.153 -0.213 0.849 1.448 sum -9.446 3.736 10.955 14.940 Atomic orbital electron populations 1.21758 0.94270 1.00998 1.01880 1.21285 0.96263 0.94479 1.00967 1.19216 0.96515 0.95015 0.91199 0.93672 1.22077 0.91799 1.03882 1.45164 0.93470 1.27259 1.10991 0.92157 0.92176 1.70917 1.08258 1.33638 1.43842 0.83055 0.69610 0.77072 0.77242 1.18595 1.20538 1.20576 1.22897 0.80919 0.74223 0.90595 1.90359 1.51474 1.51912 1.42525 1.23858 0.99461 1.08710 0.85548 1.70307 1.00843 1.16699 1.28521 1.23220 0.99619 1.03378 0.94189 1.23817 0.86648 1.04062 1.00237 1.45497 1.13352 1.39250 1.12114 1.21818 0.97041 0.99265 0.83486 1.22510 0.94708 0.97595 0.86694 1.87734 1.61096 1.48886 1.34002 1.23004 0.93198 0.87090 1.03668 0.91670 0.93986 0.92564 0.91597 0.93943 0.93363 0.77464 0.75047 0.83759 0.89486 0.96577 0.90696 0.86780 0.95232 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 8.66 71.98 0.62 -4.34 16 2 C -0.09 -4.12 5.36 30.60 0.16 -3.96 16 3 C 0.00 0.03 1.62 -12.28 -0.02 0.01 16 4 H 0.05 2.61 6.57 -2.38 -0.02 2.60 16 5 C -0.59 -34.96 7.69 25.60 0.20 -34.76 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C -0.03 -1.62 5.46 84.66 0.46 -1.15 16 8 N -0.93 -58.53 13.62 21.45 0.29 -58.24 16 9 Si 1.11 52.74 29.91 68.60 2.05 54.79 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 C 0.44 22.17 5.91 27.86 0.16 22.34 16 14 O -0.49 -26.63 14.39 -3.19 -0.05 -26.68 16 15 C 0.08 3.29 6.37 135.88 0.87 4.15 16 16 N -0.44 -17.36 8.96 -189.95 -1.70 -19.06 16 17 C -0.05 -1.41 11.85 83.98 1.00 -0.41 16 18 C -0.01 -0.22 11.53 83.61 0.96 0.74 16 19 N -0.42 -13.70 2.76 -516.90 -1.43 -15.12 16 20 C 0.11 3.11 5.82 86.38 0.50 3.61 16 21 C 0.06 1.97 6.25 71.98 0.45 2.42 16 22 O -0.40 -11.85 10.70 -148.98 -1.59 -13.45 16 23 C 0.03 0.61 11.01 113.37 1.25 1.86 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 25 H 0.04 1.62 5.51 -2.39 -0.01 1.61 16 26 H 0.06 2.15 8.05 -2.39 -0.02 2.13 16 27 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.26 16.44 6.67 -92.71 -0.62 15.82 16 30 H 0.21 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.14 2.82 8.13 -2.39 -0.02 2.80 16 33 H 0.09 3.09 6.64 -2.39 -0.02 3.07 16 34 H 0.02 0.66 7.83 -2.39 -0.02 0.64 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -77.01 319.52 5.39 -71.63 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.19 Total: 15.63 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 6.62 Total: -9.50 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -2.84 Total: -92.42 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -1.64 Total: -40.13 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 2.05 Total: 54.79 kcal Total: -77.01 5.39 -71.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705263008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.687 kcal (2) G-P(sol) polarization free energy of solvation -77.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds