Wall clock time and date at job start Mon Mar 30 2020 04:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47411 * 270.00166 * 3 2 1 5 5 H 1.48509 * 109.47052 * 30.00202 * 3 2 1 6 6 H 1.48502 * 109.46917 * 149.99832 * 3 2 1 7 7 C 1.37874 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00497 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99503 * 180.02562 * 7 2 1 10 10 H 1.08999 * 110.91875 * 62.45197 * 9 7 2 11 11 C 1.55157 * 111.00304 * 298.53840 * 9 7 2 12 12 C 1.54328 * 102.94132 * 206.42597 * 11 9 7 13 13 N 1.47015 * 107.27086 * 22.19711 * 12 11 9 14 14 C 1.34782 * 125.64867 * 181.01906 * 13 12 11 15 15 O 1.21275 * 120.00138 * 185.10144 * 14 13 12 16 16 C 1.50698 * 119.99759 * 5.10442 * 14 13 12 17 17 H 1.08994 * 109.60424 * 25.47067 * 16 14 13 18 18 C 1.53345 * 109.73970 * 145.88203 * 16 14 13 19 19 C 1.53063 * 108.42699 * 187.36462 * 18 16 14 20 20 C 1.50175 * 109.89276 * 311.10020 * 19 18 16 21 21 O 1.21284 * 118.24829 * 197.60748 * 20 19 18 22 22 N 1.32959 * 123.39269 * 17.52654 * 20 19 18 23 23 C 1.45748 * 124.41367 * 357.88046 * 22 20 19 24 24 C 1.47422 * 108.70374 * 1.28574 * 13 12 11 25 25 H 0.97005 * 119.99700 * 0.02562 * 1 2 3 26 26 H 1.09001 * 110.71649 * 88.06495 * 11 9 7 27 27 H 1.08990 * 110.87640 * 324.86370 * 11 9 7 28 28 H 1.08995 * 109.88106 * 262.77750 * 12 11 9 29 29 H 1.09000 * 110.00513 * 141.68607 * 12 11 9 30 30 H 1.09003 * 109.67077 * 307.09954 * 18 16 14 31 31 H 1.09002 * 109.67495 * 67.63207 * 18 16 14 32 32 H 1.08998 * 109.40056 * 71.22823 * 19 18 16 33 33 H 1.09003 * 109.40624 * 191.05394 * 19 18 16 34 34 H 0.97000 * 117.63972 * 177.87693 * 22 20 19 35 35 H 1.09004 * 109.30176 * 258.76072 * 23 22 20 36 36 H 1.09001 * 109.30218 * 139.17361 * 23 22 20 37 37 H 1.09001 * 110.36916 * 94.48279 * 24 13 12 38 38 H 1.09003 * 110.36544 * 216.80429 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.9003 -0.7237 0.9032 11 6 4.0681 -0.5011 -1.2718 12 6 5.4495 -1.1655 -1.4508 13 7 5.4089 -2.4542 -0.7445 14 6 6.4294 -3.3293 -0.6474 15 8 6.2563 -4.4064 -0.1176 16 6 7.7855 -2.9693 -1.1973 17 1 7.8978 -1.8853 -1.2129 18 6 8.8808 -3.5874 -0.3200 19 6 10.2362 -3.0552 -0.7916 20 6 10.3475 -3.1908 -2.2831 21 8 11.4500 -3.1272 -2.7846 22 7 9.3006 -3.3782 -3.0810 23 6 7.9262 -3.5202 -2.6169 24 6 4.0651 -2.6337 -0.1653 25 1 -0.4850 0.8401 -0.0004 26 1 4.1741 0.5718 -1.1113 27 1 3.4302 -0.6996 -2.1329 28 1 6.2244 -0.5312 -1.0206 29 1 5.6501 -1.3292 -2.5096 30 1 8.7187 -3.3075 0.7210 31 1 8.8592 -4.6729 -0.4163 32 1 10.3287 -2.0048 -0.5156 33 1 11.0345 -3.6259 -0.3169 34 1 9.4649 -3.4232 -4.0359 35 1 7.6510 -4.5749 -2.6230 36 1 7.2621 -2.9707 -3.2841 37 1 3.4342 -3.2099 -0.8421 38 1 4.1328 -3.1274 0.8042 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706230703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:47 Heat of formation + Delta-G solvation = -76.922956 kcal Electronic energy + Delta-G solvation = -20536.521299 eV Core-core repulsion = 17378.367558 eV Total energy + Delta-G solvation = -3158.153742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83337 -39.54578 -37.36276 -36.23161 -33.31869 -33.10847 -31.27104 -30.02110 -28.71451 -25.62316 -24.85374 -23.30876 -22.36960 -20.28413 -19.63612 -18.75647 -17.70961 -17.05256 -16.81931 -16.42460 -15.74379 -15.27824 -14.96470 -14.55511 -14.40596 -14.25370 -13.75307 -13.39247 -13.26651 -12.82945 -12.63878 -12.27637 -12.11347 -12.00722 -11.71319 -11.41641 -11.25688 -11.02927 -10.84901 -10.28285 -10.11687 -10.00374 -9.74898 -9.62606 -9.39107 -9.25852 -8.71176 -8.32352 -6.22065 -4.23757 2.39521 2.60212 2.99487 3.14550 3.22914 3.24078 3.28233 4.25995 4.27015 4.33119 4.37600 4.48374 4.91143 4.96640 5.04142 5.07679 5.14678 5.19787 5.36708 5.43410 5.49177 5.57662 5.67634 5.81816 5.89350 5.99757 6.29747 6.40688 6.45888 6.50987 6.58882 6.75410 7.01912 7.23973 7.54572 7.78614 7.94253 8.28483 8.34468 8.80813 9.38331 10.90742 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036311 B = 0.004400 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.938640 B = 6361.954320 C = 6695.158474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.010 3.990 10 H 0.042 0.958 11 C -0.143 4.143 12 C 0.099 3.901 13 N -0.611 5.611 14 C 0.532 3.468 15 O -0.543 6.543 16 C -0.123 4.123 17 H 0.099 0.901 18 C -0.105 4.105 19 C -0.135 4.135 20 C 0.520 3.480 21 O -0.562 6.562 22 N -0.715 5.715 23 C 0.123 3.877 24 C 0.119 3.881 25 H 0.266 0.734 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.401 0.599 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.879 -2.608 -4.292 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.096 0.904 9 C -0.009 4.009 10 H 0.060 0.940 11 C -0.181 4.181 12 C -0.024 4.024 13 N -0.344 5.344 14 C 0.318 3.682 15 O -0.420 6.420 16 C -0.145 4.145 17 H 0.117 0.883 18 C -0.143 4.143 19 C -0.175 4.175 20 C 0.308 3.692 21 O -0.441 6.441 22 N -0.367 5.367 23 C -0.001 4.001 24 C -0.002 4.002 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.237 0.763 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.186 -3.074 -4.008 16.955 hybrid contribution 0.203 1.148 -0.466 1.256 sum 16.389 -1.926 -4.474 17.097 Atomic orbital electron populations 1.69889 1.06296 1.27183 1.49872 1.24961 0.94659 0.98965 0.94173 0.86928 0.80015 0.83721 0.78434 1.20172 1.21889 1.19032 1.20794 0.87749 0.94876 1.51891 0.90367 1.20391 0.97147 0.90294 0.93106 0.94036 1.23140 0.93488 0.98988 1.02504 1.22134 1.00026 0.84542 0.95682 1.48777 1.13113 1.19478 1.52984 1.19724 0.84539 0.83753 0.80152 1.90701 1.83666 1.22372 1.45298 1.21606 0.94158 1.02817 0.95920 0.88259 1.21523 0.91114 1.01829 0.99867 1.21690 0.99613 1.04592 0.91625 1.20125 0.83702 0.75173 0.90233 1.90765 1.25594 1.51467 1.76319 1.45341 1.07035 1.73436 1.10870 1.21244 0.82527 1.02184 0.94194 1.22485 0.80019 0.99828 0.97901 0.92408 0.91903 0.90062 0.92195 0.92100 0.89825 0.89818 0.87982 0.87639 0.76321 0.90408 0.89731 0.91269 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 13.96 55.43 0.77 -25.07 16 2 C 0.08 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 19.86 24.53 -169.99 -4.17 15.69 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -5.66 6.48 56.52 0.37 -5.30 16 7 C -0.52 -13.28 9.13 -34.44 -0.31 -13.59 16 8 H 0.08 2.21 8.03 -52.49 -0.42 1.79 16 9 C 0.01 0.21 2.42 -89.50 -0.22 0.00 16 10 H 0.04 0.90 7.42 -51.93 -0.39 0.51 16 11 C -0.14 -2.57 5.08 -24.89 -0.13 -2.69 16 12 C 0.10 1.38 6.21 -3.07 -0.02 1.36 16 13 N -0.61 -9.66 3.32 -170.39 -0.57 -10.23 16 14 C 0.53 7.83 6.84 -10.98 -0.08 7.75 16 15 O -0.54 -9.83 16.72 5.56 0.09 -9.74 16 16 C -0.12 -1.28 2.21 -91.63 -0.20 -1.48 16 17 H 0.10 0.92 6.91 -51.93 -0.36 0.56 16 18 C -0.11 -1.01 4.87 -26.52 -0.13 -1.14 16 19 C -0.14 -1.18 6.03 -28.10 -0.17 -1.35 16 20 C 0.52 5.79 7.71 -12.04 -0.09 5.70 16 21 O -0.56 -8.41 17.78 5.55 0.10 -8.31 16 22 N -0.72 -6.50 5.42 -61.48 -0.33 -6.83 16 23 C 0.12 1.10 6.47 -4.48 -0.03 1.07 16 24 C 0.12 2.25 6.33 -2.41 -0.02 2.23 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.06 1.13 5.13 -51.93 -0.27 0.86 16 27 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 28 H 0.06 0.73 7.63 -51.93 -0.40 0.33 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.17 8.79 -40.82 -0.36 2.81 16 35 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 38 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 LS Contribution 304.49 15.07 4.59 4.59 Total: -1.00 -31.73 304.49 -6.57 -38.30 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.57 Total: 1.85 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.49 Total: -0.24 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.13 Total: -42.13 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.19 Total: -18.05 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.17 Total: 15.69 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.73 -6.57 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706230703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.623 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds