Wall clock time and date at job start Mon Mar 30 2020 04:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47411 * 270.00166 * 3 2 1 5 5 H 1.48509 * 109.47052 * 30.00202 * 3 2 1 6 6 H 1.48502 * 109.46917 * 149.99832 * 3 2 1 7 7 C 1.37874 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00497 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99503 * 180.02562 * 7 2 1 10 10 H 1.08999 * 110.91875 * 62.45197 * 9 7 2 11 11 C 1.55157 * 111.00304 * 298.53840 * 9 7 2 12 12 C 1.54328 * 102.94132 * 206.42597 * 11 9 7 13 13 N 1.47015 * 107.27086 * 22.19711 * 12 11 9 14 14 C 1.34782 * 125.64867 * 181.01906 * 13 12 11 15 15 O 1.21275 * 120.00138 * 185.10144 * 14 13 12 16 16 C 1.50698 * 119.99759 * 5.10442 * 14 13 12 17 17 H 1.08994 * 109.60424 * 25.47067 * 16 14 13 18 18 C 1.53345 * 109.73970 * 145.88203 * 16 14 13 19 19 C 1.53063 * 108.42699 * 187.36462 * 18 16 14 20 20 C 1.50175 * 109.89276 * 311.10020 * 19 18 16 21 21 O 1.21284 * 118.24829 * 197.60748 * 20 19 18 22 22 N 1.32959 * 123.39269 * 17.52654 * 20 19 18 23 23 C 1.45748 * 124.41367 * 357.88046 * 22 20 19 24 24 C 1.47422 * 108.70374 * 1.28574 * 13 12 11 25 25 H 0.97005 * 119.99700 * 0.02562 * 1 2 3 26 26 H 1.09001 * 110.71649 * 88.06495 * 11 9 7 27 27 H 1.08990 * 110.87640 * 324.86370 * 11 9 7 28 28 H 1.08995 * 109.88106 * 262.77750 * 12 11 9 29 29 H 1.09000 * 110.00513 * 141.68607 * 12 11 9 30 30 H 1.09003 * 109.67077 * 307.09954 * 18 16 14 31 31 H 1.09002 * 109.67495 * 67.63207 * 18 16 14 32 32 H 1.08998 * 109.40056 * 71.22823 * 19 18 16 33 33 H 1.09003 * 109.40624 * 191.05394 * 19 18 16 34 34 H 0.97000 * 117.63972 * 177.87693 * 22 20 19 35 35 H 1.09004 * 109.30176 * 258.76072 * 23 22 20 36 36 H 1.09001 * 109.30218 * 139.17361 * 23 22 20 37 37 H 1.09001 * 110.36916 * 94.48279 * 24 13 12 38 38 H 1.09003 * 110.36544 * 216.80429 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 1 3.9003 -0.7237 0.9032 11 6 4.0681 -0.5011 -1.2718 12 6 5.4495 -1.1655 -1.4508 13 7 5.4089 -2.4542 -0.7445 14 6 6.4294 -3.3293 -0.6474 15 8 6.2563 -4.4064 -0.1176 16 6 7.7855 -2.9693 -1.1973 17 1 7.8978 -1.8853 -1.2129 18 6 8.8808 -3.5874 -0.3200 19 6 10.2362 -3.0552 -0.7916 20 6 10.3475 -3.1908 -2.2831 21 8 11.4500 -3.1272 -2.7846 22 7 9.3006 -3.3782 -3.0810 23 6 7.9262 -3.5202 -2.6169 24 6 4.0651 -2.6337 -0.1653 25 1 -0.4850 0.8401 -0.0004 26 1 4.1741 0.5718 -1.1113 27 1 3.4302 -0.6996 -2.1329 28 1 6.2244 -0.5312 -1.0206 29 1 5.6501 -1.3292 -2.5096 30 1 8.7187 -3.3075 0.7210 31 1 8.8592 -4.6729 -0.4163 32 1 10.3287 -2.0048 -0.5156 33 1 11.0345 -3.6259 -0.3169 34 1 9.4649 -3.4232 -4.0359 35 1 7.6510 -4.5749 -2.6230 36 1 7.2621 -2.9707 -3.2841 37 1 3.4342 -3.2099 -0.8421 38 1 4.1328 -3.1274 0.8042 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706230703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:47 Heat of formation + Delta-G solvation = -101.014311 kcal Electronic energy + Delta-G solvation = -20537.565979 eV Core-core repulsion = 17378.367558 eV Total energy + Delta-G solvation = -3159.198421 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.77451 -40.66275 -38.67704 -37.21847 -34.95836 -34.06624 -32.81095 -31.00932 -30.10306 -27.17546 -25.72023 -24.46820 -23.52076 -21.69720 -20.84504 -19.72864 -18.94774 -18.56128 -17.87968 -17.35865 -16.80034 -16.55651 -16.23569 -16.00017 -15.47402 -15.07236 -14.84215 -14.74873 -14.37919 -14.34522 -13.91657 -13.70087 -13.22729 -12.99504 -12.88316 -12.75709 -12.52412 -12.23283 -12.00222 -11.92039 -11.65399 -11.43997 -11.13762 -10.89964 -10.84049 -10.70785 -10.17749 -9.60950 -8.27883 -6.34865 1.36982 1.42846 1.47761 1.52303 1.60157 1.93675 2.33423 2.37051 3.06919 3.34498 3.56027 3.60017 3.70970 3.88359 3.99589 4.17363 4.22470 4.27423 4.40345 4.43360 4.51518 4.63926 4.70865 4.75161 4.86594 4.91579 4.95787 5.11404 5.15484 5.18326 5.27464 5.55926 5.68271 5.76439 6.24931 6.27195 6.60149 6.71383 7.10072 7.16012 7.31448 8.88824 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036311 B = 0.004400 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.938640 B = 6361.954320 C = 6695.158474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.014 3.986 3 Si 0.947 3.053 4 H -0.254 1.254 5 H -0.302 1.302 6 H -0.239 1.239 7 C -0.520 4.520 8 H 0.031 0.969 9 C 0.006 3.994 10 H 0.041 0.959 11 C -0.142 4.142 12 C 0.103 3.897 13 N -0.613 5.613 14 C 0.533 3.467 15 O -0.582 6.582 16 C -0.114 4.114 17 H 0.125 0.875 18 C -0.102 4.102 19 C -0.126 4.126 20 C 0.517 3.483 21 O -0.606 6.606 22 N -0.704 5.704 23 C 0.127 3.873 24 C 0.127 3.873 25 H 0.266 0.734 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.408 0.592 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.052 0.948 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.805 -0.825 -5.223 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.183 4.183 3 Si 0.771 3.229 4 H -0.178 1.178 5 H -0.229 1.229 6 H -0.163 1.163 7 C -0.559 4.559 8 H 0.049 0.951 9 C -0.014 4.014 10 H 0.059 0.941 11 C -0.180 4.180 12 C -0.019 4.019 13 N -0.345 5.345 14 C 0.322 3.678 15 O -0.462 6.462 16 C -0.135 4.135 17 H 0.143 0.857 18 C -0.140 4.140 19 C -0.166 4.166 20 C 0.305 3.695 21 O -0.489 6.489 22 N -0.354 5.354 23 C 0.002 3.998 24 C 0.004 3.996 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.131 0.869 34 H 0.245 0.755 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.070 0.930 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.127 -1.304 -4.964 19.803 hybrid contribution -0.818 0.442 -0.138 0.940 sum 18.308 -0.862 -5.103 19.026 Atomic orbital electron populations 1.70065 1.08559 1.28248 1.52176 1.25905 0.95373 1.03284 0.93742 0.85862 0.79314 0.77944 0.79734 1.17816 1.22924 1.16264 1.21066 0.90665 0.93150 1.50984 0.95072 1.20252 0.93860 0.92264 0.95008 0.94058 1.22997 0.95668 0.99513 0.99791 1.22279 0.98172 0.83424 0.97999 1.48784 1.11868 1.20678 1.53160 1.20451 0.85463 0.82722 0.79133 1.90693 1.84403 1.24158 1.46984 1.21602 0.91002 1.04416 0.96494 0.85727 1.21485 0.91376 1.01146 0.99967 1.21668 0.99065 1.05938 0.89897 1.20526 0.83287 0.74447 0.91199 1.90756 1.27215 1.53733 1.77158 1.45267 1.06760 1.72212 1.11209 1.21266 0.82556 1.02238 0.93748 1.22085 0.82063 0.98322 0.97138 0.92464 0.90989 0.91125 0.88807 0.88434 0.89597 0.91037 0.85959 0.86886 0.75540 0.91032 0.87388 0.92998 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.94 13.96 21.45 0.30 -56.64 16 2 C 0.01 0.78 5.46 84.65 0.46 1.24 16 3 Si 0.95 39.97 24.53 68.60 1.68 41.65 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.24 -9.01 6.48 99.48 0.64 -8.36 16 7 C -0.52 -27.72 9.13 25.60 0.23 -27.49 16 8 H 0.03 1.88 8.03 -2.91 -0.02 1.86 16 9 C 0.01 0.24 2.42 -10.07 -0.02 0.21 16 10 H 0.04 1.72 7.42 -2.39 -0.02 1.70 16 11 C -0.14 -4.62 5.08 31.78 0.16 -4.46 16 12 C 0.10 2.35 6.21 86.73 0.54 2.89 16 13 N -0.61 -17.69 3.32 -811.37 -2.70 -20.39 16 14 C 0.53 14.32 6.84 87.66 0.60 14.92 16 15 O -0.58 -20.58 16.72 -3.01 -0.05 -20.63 16 16 C -0.11 -1.91 2.21 -11.45 -0.03 -1.94 16 17 H 0.12 1.55 6.91 -2.39 -0.02 1.53 16 18 C -0.10 -1.65 4.87 30.73 0.15 -1.50 16 19 C -0.13 -1.78 6.03 29.70 0.18 -1.60 16 20 C 0.52 10.03 7.71 87.77 0.68 10.71 16 21 O -0.61 -17.01 17.78 -3.04 -0.05 -17.07 16 22 N -0.70 -10.47 5.42 -467.83 -2.54 -13.00 16 23 C 0.13 1.76 6.47 86.50 0.56 2.32 16 24 C 0.13 4.80 6.33 86.93 0.55 5.35 16 25 H 0.27 14.94 8.31 -92.70 -0.77 14.17 16 26 H 0.07 2.23 5.13 -2.39 -0.01 2.22 16 27 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 28 H 0.09 1.62 7.63 -2.39 -0.02 1.60 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 32 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.41 5.22 8.79 -92.71 -0.81 4.41 16 35 H 0.07 1.15 8.11 -2.39 -0.02 1.13 16 36 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 2.11 8.03 -2.39 -0.02 2.09 16 38 H 0.05 2.14 8.09 -2.39 -0.02 2.12 16 Total: -1.00 -72.88 304.49 0.90 -71.98 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.19 Total: 13.42 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 4.06 Total: 0.67 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -4.94 Total: -90.03 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.10 Total: -37.69 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.68 Total: 41.65 kcal Total: -72.88 0.90 -71.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706230703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.034 kcal (2) G-P(sol) polarization free energy of solvation -72.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds