Wall clock time and date at job start Mon Mar 30 2020 04:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31021 * 1 3 3 Si 1.86797 * 120.00200 * 2 1 4 4 H 1.48497 * 109.47529 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46730 * 299.99934 * 3 2 1 6 6 H 1.48498 * 109.47057 * 59.99587 * 3 2 1 7 7 C 1.39587 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00084 * 180.02562 * 7 2 1 9 9 N 1.36121 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00308 * 179.97438 * 9 7 2 11 11 O 1.21502 * 119.99703 * 359.97438 * 10 9 7 12 12 C 1.48829 * 120.00389 * 180.02562 * 10 9 7 13 13 O 1.21447 * 119.99826 * 0.02562 * 12 10 9 14 14 N 1.34770 * 120.00389 * 180.02562 * 12 10 9 15 15 C 1.46505 * 120.00560 * 179.97438 * 14 12 10 16 16 C 1.52988 * 109.47521 * 179.97438 * 15 14 12 17 17 H 1.09007 * 110.10038 * 53.48766 * 16 15 14 18 18 C 1.54380 * 110.07202 * 291.97124 * 16 15 14 19 19 C 1.54932 * 104.22489 * 217.20290 * 18 16 15 20 20 C 1.54993 * 102.81288 * 37.72858 * 19 18 16 21 21 C 1.53484 * 110.07255 * 175.00227 * 16 15 14 22 22 C 1.52558 * 121.08236 * 335.16562 * 21 16 15 23 23 C 1.52685 * 121.07519 * 263.47544 * 21 16 15 24 24 H 0.97000 * 120.00029 * 359.97438 * 1 2 3 25 25 H 0.97006 * 120.00040 * 0.02562 * 9 7 2 26 26 H 0.97000 * 120.00319 * 359.97438 * 14 12 10 27 27 H 1.09007 * 109.46788 * 59.99879 * 15 14 12 28 28 H 1.08998 * 109.46979 * 300.00818 * 15 14 12 29 29 H 1.09005 * 110.48219 * 98.52429 * 18 16 15 30 30 H 1.08996 * 110.59830 * 335.94631 * 18 16 15 31 31 H 1.09004 * 110.74289 * 279.39745 * 19 18 16 32 32 H 1.08991 * 110.90062 * 156.13163 * 19 18 16 33 33 H 1.09001 * 110.50732 * 203.78520 * 20 19 18 34 34 H 1.08992 * 110.63127 * 81.12977 * 20 19 18 35 35 H 1.09002 * 117.51198 * 357.03172 * 22 21 16 36 36 H 1.08998 * 117.50667 * 142.08057 * 22 21 16 37 37 H 1.09006 * 117.53815 * 3.02495 * 23 21 16 38 38 H 1.09000 * 117.50398 * 217.90784 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7042 1.3464 0.0006 5 1 1.8855 2.3963 -1.2126 6 1 1.8855 2.3964 1.2124 7 6 2.0081 -1.2089 0.0005 8 1 3.0881 -1.2089 0.0010 9 7 1.3275 -2.3877 0.0005 10 6 2.0013 -3.5549 0.0005 11 8 3.2164 -3.5549 0.0001 12 6 1.2572 -4.8438 0.0000 13 8 0.0428 -4.8438 -0.0010 14 7 1.9310 -6.0110 0.0005 15 6 1.1986 -7.2798 0.0005 16 6 2.1927 -8.4426 0.0005 17 1 2.8991 -8.3316 0.8232 18 6 2.9494 -8.4928 -1.3442 19 6 3.1093 -10.0062 -1.6349 20 6 1.7656 -10.5959 -1.1356 21 6 1.4434 -9.7763 0.1261 22 6 0.0634 -9.8465 0.7726 23 6 1.2741 -10.4606 1.4804 24 1 -0.4850 0.8400 0.0004 25 1 0.3575 -2.3877 -0.0002 26 1 2.9010 -6.0111 0.0009 27 1 0.5722 -7.3377 -0.8898 28 1 0.5715 -7.3373 0.8902 29 1 3.9258 -8.0173 -1.2505 30 1 2.3665 -8.0130 -2.1304 31 1 3.9457 -10.4211 -1.0724 32 1 3.2368 -10.1858 -2.7023 33 1 1.8807 -11.6508 -0.8867 34 1 0.9861 -10.4643 -1.8859 35 1 -0.3469 -8.9247 1.1851 36 1 -0.6636 -10.5301 0.3343 37 1 1.6600 -9.9427 2.3585 38 1 1.3435 -11.5480 1.5072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706268694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:42 Heat of formation + Delta-G solvation = -65.303108 kcal Electronic energy + Delta-G solvation = -19889.576412 eV Core-core repulsion = 16731.926545 eV Total energy + Delta-G solvation = -3157.649867 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00166 -39.10159 -37.14217 -34.93693 -34.26443 -33.67750 -31.40127 -29.87953 -26.50786 -25.78362 -24.25122 -22.74960 -22.05557 -20.69793 -19.64410 -18.56007 -18.17863 -16.91653 -16.18169 -15.54440 -15.46034 -14.97527 -14.82021 -14.58166 -14.18722 -13.86239 -13.74376 -12.92957 -12.85728 -12.63274 -12.41959 -11.96038 -11.77101 -11.61847 -11.23538 -11.21233 -11.00444 -10.84743 -10.72927 -10.50011 -10.40427 -10.38536 -10.31332 -9.78178 -9.72420 -8.69852 -8.25709 -8.21527 -6.66242 -3.98576 2.47039 3.14603 3.16671 3.23273 3.40526 3.61263 4.06555 4.24649 4.29911 4.43394 4.65933 4.70165 4.95548 5.03678 5.10120 5.13243 5.19770 5.34420 5.38014 5.49870 5.60940 5.67312 5.68874 5.79921 5.81361 5.90254 5.93989 6.01190 6.05319 6.09584 6.14882 6.26601 6.81461 7.31980 7.71046 7.90236 8.34307 8.64783 8.97416 9.33142 9.86232 10.48766 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042599 B = 0.003554 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.129761 B = 7876.315490 C = 8232.175953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.500 5.500 10 C 0.394 3.606 11 O -0.598 6.598 12 C 0.512 3.488 13 O -0.548 6.548 14 N -0.714 5.714 15 C 0.128 3.872 16 C -0.069 4.069 17 H 0.081 0.919 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.088 4.088 21 C -0.122 4.122 22 C -0.173 4.173 23 C -0.169 4.169 24 H 0.280 0.720 25 H 0.405 0.595 26 H 0.409 0.591 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 -18.529 -0.646 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.131 0.869 9 N -0.134 5.134 10 C 0.179 3.821 11 O -0.487 6.487 12 C 0.297 3.703 13 O -0.425 6.425 14 N -0.368 5.368 15 C 0.004 3.996 16 C -0.087 4.087 17 H 0.100 0.900 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.210 4.210 23 C -0.206 4.206 24 H 0.090 0.910 25 H 0.240 0.760 26 H 0.245 0.755 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.080 -18.379 -0.649 18.507 hybrid contribution 0.124 0.754 0.077 0.768 sum 2.204 -17.624 -0.572 17.771 Atomic orbital electron populations 1.69496 1.06520 1.29230 1.45473 1.25591 0.95628 1.00473 0.95947 0.85668 0.79871 0.80021 0.78054 1.18713 1.20291 1.20300 1.19932 0.93998 0.81887 1.47811 0.86935 1.41571 1.10493 1.04241 1.57097 1.18981 0.87822 0.84262 0.91065 1.90576 1.12902 1.86665 1.58535 1.20679 0.87499 0.85929 0.76236 1.90688 1.14079 1.88157 1.49547 1.45674 1.11092 1.04686 1.75369 1.21433 0.94194 0.81708 1.02235 1.21466 0.96413 0.91941 0.98919 0.90038 1.22470 1.00515 0.96426 0.96410 1.22452 0.97140 0.95558 1.00731 1.21878 0.97479 0.98068 0.95074 1.21668 0.99590 0.96642 0.94366 1.23036 0.90874 1.03245 1.03796 1.23015 1.02611 0.99791 0.95159 0.90985 0.76006 0.75546 0.91418 0.91642 0.91093 0.90952 0.91457 0.91464 0.91773 0.91130 0.88141 0.88751 0.88742 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.44 13.03 55.53 0.72 -22.72 16 2 C 0.03 0.79 5.51 -17.39 -0.10 0.70 16 3 Si 0.94 20.16 29.56 -169.99 -5.02 15.13 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.49 9.67 -15.15 -0.15 -8.63 16 8 H 0.11 3.19 7.15 -52.49 -0.38 2.82 16 9 N -0.50 -13.52 5.25 -11.59 -0.06 -13.58 16 10 C 0.39 10.05 7.82 -11.88 -0.09 9.96 16 11 O -0.60 -16.14 16.03 5.36 0.09 -16.05 16 12 C 0.51 11.31 7.87 -11.88 -0.09 11.21 16 13 O -0.55 -13.06 16.47 5.41 0.09 -12.97 16 14 N -0.71 -12.35 5.40 -60.93 -0.33 -12.68 16 15 C 0.13 1.80 4.46 -4.04 -0.02 1.78 16 16 C -0.07 -0.75 2.83 -89.65 -0.25 -1.00 16 17 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 18 C -0.12 -1.24 6.10 -24.99 -0.15 -1.39 16 19 C -0.12 -1.03 6.91 -24.66 -0.17 -1.20 16 20 C -0.09 -0.75 6.58 -25.23 -0.17 -0.91 16 21 C -0.12 -1.17 2.27 -154.19 -0.35 -1.52 16 22 C -0.17 -1.64 9.61 -26.91 -0.26 -1.90 16 23 C -0.17 -1.48 10.24 -26.85 -0.27 -1.76 16 24 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 25 H 0.40 11.03 7.35 -40.82 -0.30 10.73 16 26 H 0.41 6.68 7.82 -40.82 -0.32 6.36 16 27 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 28 H 0.07 0.95 6.44 -51.93 -0.33 0.62 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.81 7.77 -51.93 -0.40 0.41 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 1.05 6.40 -51.93 -0.33 0.72 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -30.46 319.40 -7.19 -37.65 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -5.42 Total: 15.06 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -2.07 Total: 5.34 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.33 Total: -48.98 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: 0.18 Total: -29.02 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.46 -7.19 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706268694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.649 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds