Wall clock time and date at job start Mon Mar 30 2020 04:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31021 * 1 3 3 Si 1.86797 * 120.00200 * 2 1 4 4 H 1.48497 * 109.47529 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46730 * 299.99934 * 3 2 1 6 6 H 1.48498 * 109.47057 * 59.99587 * 3 2 1 7 7 C 1.39587 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00084 * 180.02562 * 7 2 1 9 9 N 1.36121 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00308 * 179.97438 * 9 7 2 11 11 O 1.21502 * 119.99703 * 359.97438 * 10 9 7 12 12 C 1.48829 * 120.00389 * 180.02562 * 10 9 7 13 13 O 1.21447 * 119.99826 * 0.02562 * 12 10 9 14 14 N 1.34770 * 120.00389 * 180.02562 * 12 10 9 15 15 C 1.46505 * 120.00560 * 179.97438 * 14 12 10 16 16 C 1.52988 * 109.47521 * 179.97438 * 15 14 12 17 17 H 1.09007 * 110.10038 * 53.48766 * 16 15 14 18 18 C 1.54380 * 110.07202 * 291.97124 * 16 15 14 19 19 C 1.54932 * 104.22489 * 217.20290 * 18 16 15 20 20 C 1.54993 * 102.81288 * 37.72858 * 19 18 16 21 21 C 1.53484 * 110.07255 * 175.00227 * 16 15 14 22 22 C 1.52558 * 121.08236 * 335.16562 * 21 16 15 23 23 C 1.52685 * 121.07519 * 263.47544 * 21 16 15 24 24 H 0.97000 * 120.00029 * 359.97438 * 1 2 3 25 25 H 0.97006 * 120.00040 * 0.02562 * 9 7 2 26 26 H 0.97000 * 120.00319 * 359.97438 * 14 12 10 27 27 H 1.09007 * 109.46788 * 59.99879 * 15 14 12 28 28 H 1.08998 * 109.46979 * 300.00818 * 15 14 12 29 29 H 1.09005 * 110.48219 * 98.52429 * 18 16 15 30 30 H 1.08996 * 110.59830 * 335.94631 * 18 16 15 31 31 H 1.09004 * 110.74289 * 279.39745 * 19 18 16 32 32 H 1.08991 * 110.90062 * 156.13163 * 19 18 16 33 33 H 1.09001 * 110.50732 * 203.78520 * 20 19 18 34 34 H 1.08992 * 110.63127 * 81.12977 * 20 19 18 35 35 H 1.09002 * 117.51198 * 357.03172 * 22 21 16 36 36 H 1.08998 * 117.50667 * 142.08057 * 22 21 16 37 37 H 1.09006 * 117.53815 * 3.02495 * 23 21 16 38 38 H 1.09000 * 117.50398 * 217.90784 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7042 1.3464 0.0006 5 1 1.8855 2.3963 -1.2126 6 1 1.8855 2.3964 1.2124 7 6 2.0081 -1.2089 0.0005 8 1 3.0881 -1.2089 0.0010 9 7 1.3275 -2.3877 0.0005 10 6 2.0013 -3.5549 0.0005 11 8 3.2164 -3.5549 0.0001 12 6 1.2572 -4.8438 0.0000 13 8 0.0428 -4.8438 -0.0010 14 7 1.9310 -6.0110 0.0005 15 6 1.1986 -7.2798 0.0005 16 6 2.1927 -8.4426 0.0005 17 1 2.8991 -8.3316 0.8232 18 6 2.9494 -8.4928 -1.3442 19 6 3.1093 -10.0062 -1.6349 20 6 1.7656 -10.5959 -1.1356 21 6 1.4434 -9.7763 0.1261 22 6 0.0634 -9.8465 0.7726 23 6 1.2741 -10.4606 1.4804 24 1 -0.4850 0.8400 0.0004 25 1 0.3575 -2.3877 -0.0002 26 1 2.9010 -6.0111 0.0009 27 1 0.5722 -7.3377 -0.8898 28 1 0.5715 -7.3373 0.8902 29 1 3.9258 -8.0173 -1.2505 30 1 2.3665 -8.0130 -2.1304 31 1 3.9457 -10.4211 -1.0724 32 1 3.2368 -10.1858 -2.7023 33 1 1.8807 -11.6508 -0.8867 34 1 0.9861 -10.4643 -1.8859 35 1 -0.3469 -8.9247 1.1851 36 1 -0.6636 -10.5301 0.3343 37 1 1.6600 -9.9427 2.3585 38 1 1.3435 -11.5480 1.5072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706268694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:42 Heat of formation + Delta-G solvation = -85.725681 kcal Electronic energy + Delta-G solvation = -19890.462001 eV Core-core repulsion = 16731.926545 eV Total energy + Delta-G solvation = -3158.535457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42141 -40.39926 -39.04817 -36.57469 -35.82509 -34.77815 -33.46011 -31.02233 -28.01160 -27.09335 -25.55271 -23.97744 -23.11193 -21.59209 -21.26281 -20.43504 -19.46244 -18.59243 -17.69558 -17.01628 -16.77822 -16.45842 -16.08757 -15.77758 -15.70950 -15.46582 -15.00657 -14.64864 -14.27664 -13.68906 -13.59805 -13.44844 -13.06625 -12.97262 -12.58230 -12.40365 -12.29994 -12.08425 -11.91830 -11.80575 -11.73508 -11.68435 -11.49301 -11.10224 -10.54687 -10.29052 -10.24453 -10.21018 -8.66890 -6.11927 0.58596 1.41139 1.45804 1.57207 1.81440 2.29174 2.36189 2.82543 3.14425 3.24205 3.50299 3.65217 3.81421 3.93860 4.02260 4.16902 4.23840 4.38577 4.42651 4.44108 4.76548 4.80994 4.88156 4.89708 4.97361 5.07203 5.13874 5.19951 5.23170 5.24797 5.29134 5.33563 5.35991 5.48403 5.67171 6.14907 6.37742 6.80290 7.00579 7.26794 7.78641 8.49236 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042599 B = 0.003554 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.129761 B = 7876.315490 C = 8232.175953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.345 4.345 8 H 0.099 0.901 9 N -0.511 5.511 10 C 0.389 3.611 11 O -0.616 6.616 12 C 0.517 3.483 13 O -0.568 6.568 14 N -0.692 5.692 15 C 0.128 3.872 16 C -0.063 4.063 17 H 0.085 0.915 18 C -0.124 4.124 19 C -0.116 4.116 20 C -0.085 4.085 21 C -0.128 4.128 22 C -0.181 4.181 23 C -0.159 4.159 24 H 0.289 0.711 25 H 0.400 0.600 26 H 0.415 0.585 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 -19.536 -0.671 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.475 4.475 8 H 0.117 0.883 9 N -0.144 5.144 10 C 0.174 3.826 11 O -0.506 6.506 12 C 0.300 3.700 13 O -0.448 6.448 14 N -0.344 5.344 15 C 0.005 3.995 16 C -0.082 4.082 17 H 0.103 0.897 18 C -0.162 4.162 19 C -0.153 4.153 20 C -0.122 4.122 21 C -0.129 4.129 22 C -0.218 4.218 23 C -0.195 4.195 24 H 0.099 0.901 25 H 0.235 0.765 26 H 0.252 0.748 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.744 -19.428 -0.675 19.632 hybrid contribution -0.098 0.977 0.094 0.987 sum 2.645 -18.451 -0.581 18.649 Atomic orbital electron populations 1.69561 1.07859 1.30782 1.45171 1.26564 0.96510 1.03519 0.94346 0.84625 0.78272 0.75176 0.78738 1.18716 1.19038 1.19056 1.20032 0.93708 0.83051 1.50721 0.88280 1.41665 1.10233 1.04819 1.57729 1.19608 0.87875 0.85234 0.89875 1.90542 1.13760 1.87286 1.59035 1.20097 0.87011 0.86014 0.76883 1.90679 1.14637 1.88359 1.51097 1.45644 1.11482 1.04479 1.72806 1.21661 0.94881 0.81014 1.01898 1.21441 0.95831 0.91291 0.99598 0.89661 1.22487 1.00141 0.98046 0.95504 1.22439 0.97514 0.93827 1.01528 1.21887 0.97313 0.98720 0.94311 1.21700 0.99534 0.96065 0.95596 1.23057 0.91280 1.03122 1.04324 1.23088 1.01329 1.00716 0.94400 0.90081 0.76506 0.74773 0.91868 0.91808 0.91021 0.92181 0.90572 0.90555 0.90217 0.91294 0.89599 0.87674 0.88926 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.50 13.03 21.77 0.28 -48.22 16 2 C -0.01 -0.27 5.51 85.14 0.47 0.20 16 3 Si 1.01 40.92 29.56 68.60 2.03 42.95 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.35 -19.61 9.67 84.35 0.82 -18.80 16 8 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 9 N -0.51 -28.44 5.25 -308.88 -1.62 -30.06 16 10 C 0.39 20.29 7.82 87.08 0.68 20.97 16 11 O -0.62 -33.83 16.03 -3.72 -0.06 -33.89 16 12 C 0.52 23.11 7.87 87.08 0.69 23.80 16 13 O -0.57 -27.52 16.47 -3.55 -0.06 -27.58 16 14 N -0.69 -23.80 5.40 -465.01 -2.51 -26.31 16 15 C 0.13 3.54 4.46 86.37 0.39 3.92 16 16 C -0.06 -1.29 2.83 -10.17 -0.03 -1.32 16 17 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 18 C -0.12 -2.38 6.10 31.72 0.19 -2.19 16 19 C -0.12 -1.69 6.91 31.94 0.22 -1.47 16 20 C -0.09 -1.23 6.58 31.57 0.21 -1.03 16 21 C -0.13 -2.22 2.27 -51.98 -0.12 -2.33 16 22 C -0.18 -3.17 9.61 30.48 0.29 -2.88 16 23 C -0.16 -2.42 10.24 30.52 0.31 -2.10 16 24 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 25 H 0.40 22.57 7.35 -92.70 -0.68 21.89 16 26 H 0.42 13.38 7.82 -92.71 -0.73 12.65 16 27 H 0.06 1.85 8.00 -2.38 -0.02 1.83 16 28 H 0.06 1.83 6.44 -2.39 -0.02 1.82 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.06 1.30 7.77 -2.39 -0.02 1.28 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 0.93 8.11 -2.39 -0.02 0.91 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.76 6.40 -2.39 -0.02 1.74 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -65.40 319.40 1.86 -63.54 By element: Atomic # 1 Polarization: 43.12 SS G_CDS: -0.32 Total: 42.80 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 4.12 Total: 16.77 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -3.85 Total: -104.59 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -0.12 Total: -61.47 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -65.40 1.86 -63.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706268694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.187 kcal (2) G-P(sol) polarization free energy of solvation -65.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds