Wall clock time and date at job start Mon Mar 30 2020 04:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48500 * 109.46632 * 270.00163 * 3 2 1 5 5 H 1.48496 * 109.46690 * 29.99716 * 3 2 1 6 6 H 1.48498 * 109.47171 * 149.99913 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00066 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99838 * 180.02562 * 11 10 9 14 14 H 1.09003 * 110.85935 * 59.29696 * 13 11 10 15 15 C 1.54630 * 110.96925 * 295.50770 * 13 11 10 16 16 C 1.51344 * 104.17083 * 217.10958 * 15 13 11 17 17 O 1.21278 * 124.92967 * 196.24966 * 16 15 13 18 18 N 1.34427 * 110.12751 * 16.20077 * 16 15 13 19 19 C 1.46490 * 124.34987 * 180.45959 * 18 16 15 20 20 C 1.53007 * 109.47343 * 269.97719 * 19 18 16 21 21 C 1.52998 * 117.49860 * 243.62379 * 20 19 18 22 22 C 1.52989 * 117.50240 * 174.99843 * 20 19 18 23 23 C 1.46765 * 111.29643 * 0.44081 * 18 16 15 24 24 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 26 26 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 27 27 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 28 28 H 1.08997 * 110.48675 * 335.76318 * 15 13 11 29 29 H 1.09004 * 110.48696 * 98.40680 * 15 13 11 30 30 H 1.09002 * 109.47127 * 29.97703 * 19 18 16 31 31 H 1.09001 * 109.47364 * 149.98138 * 19 18 16 32 32 H 1.09002 * 115.54254 * 29.32812 * 20 19 18 33 33 H 1.08998 * 117.49719 * 359.97438 * 21 20 19 34 34 H 1.09006 * 117.49689 * 145.01805 * 21 20 19 35 35 H 1.08997 * 117.50268 * 214.98237 * 22 20 19 36 36 H 1.09004 * 117.49952 * 359.97438 * 22 20 19 37 37 H 1.09003 * 110.24131 * 223.97739 * 23 18 16 38 38 H 1.09000 * 110.32192 * 102.02648 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7330 -6.0288 0.0016 14 1 3.3805 -5.9854 0.8775 15 6 3.5653 -6.0459 -1.3014 16 6 3.7304 -7.5170 -1.6163 17 8 4.5442 -7.9743 -2.3905 18 7 2.8447 -8.2430 -0.9124 19 6 2.7391 -9.7028 -0.9724 20 6 1.7514 -10.0980 -2.0721 21 6 0.4768 -10.8299 -1.6472 22 6 1.5891 -11.5891 -2.3735 23 6 1.9975 -7.3850 -0.0756 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.1567 -3.4354 0.0009 28 1 3.0273 -5.5421 -2.1044 29 1 4.5367 -5.5784 -1.1399 30 1 3.7178 -10.1292 -1.1927 31 1 2.3854 -10.0813 -0.0133 32 1 1.6784 -9.4043 -2.9097 33 1 0.3422 -11.0304 -0.5843 34 1 -0.4352 -10.6179 -2.2054 35 1 1.4089 -11.8766 -3.4093 36 1 2.1863 -12.2887 -1.7886 37 1 1.8930 -7.8147 0.9207 38 1 1.0175 -7.2570 -0.5352 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706389603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:25 Heat of formation + Delta-G solvation = -54.155542 kcal Electronic energy + Delta-G solvation = -19781.600999 eV Core-core repulsion = 16624.434526 eV Total energy + Delta-G solvation = -3157.166473 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73561 -38.76545 -37.58469 -36.06422 -34.30395 -32.82705 -32.16593 -27.99758 -27.57390 -26.71273 -23.59016 -22.62262 -21.89775 -21.25260 -19.68498 -19.40042 -17.63792 -16.97878 -16.38694 -15.73160 -15.35543 -15.16613 -15.07322 -14.65959 -14.32559 -14.09050 -13.44511 -13.39376 -13.01037 -12.89314 -12.67527 -12.02864 -11.92742 -11.79970 -11.75516 -11.46669 -11.28278 -11.00542 -10.91945 -10.72272 -10.36752 -10.20852 -9.92240 -9.45660 -9.19631 -8.81333 -8.78132 -7.99737 -6.21482 -4.28775 2.52506 2.81532 3.14603 3.21844 3.28278 3.30265 3.56662 3.85144 4.27399 4.31915 4.42121 4.50002 4.67280 4.74095 4.90268 4.96244 5.03883 5.15104 5.29658 5.38929 5.39586 5.45679 5.49953 5.61743 5.65720 5.76472 5.86251 5.94216 5.96801 6.44251 7.00284 7.21728 7.30477 7.43829 7.59222 7.90828 8.09946 8.50323 8.69271 8.95794 9.38009 10.88629 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.037368 B = 0.003502 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.122484 B = 7992.376368 C = 8442.308040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.706 5.706 11 C 0.509 3.491 12 O -0.551 6.551 13 C -0.125 4.125 14 H 0.113 0.887 15 C -0.144 4.144 16 C 0.521 3.479 17 O -0.534 6.534 18 N -0.617 5.617 19 C 0.159 3.841 20 C -0.171 4.171 21 C -0.177 4.177 22 C -0.175 4.175 23 C 0.119 3.881 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.392 0.608 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 -18.240 -0.077 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.353 5.353 11 C 0.293 3.707 12 O -0.430 6.430 13 C -0.147 4.147 14 H 0.131 0.869 15 C -0.185 4.185 16 C 0.309 3.691 17 O -0.411 6.411 18 N -0.350 5.350 19 C 0.037 3.963 20 C -0.190 4.190 21 C -0.214 4.214 22 C -0.213 4.213 23 C -0.004 4.004 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.225 0.775 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.779 -18.545 -0.470 19.156 hybrid contribution 0.729 1.095 0.027 1.316 sum 5.508 -17.450 -0.444 18.304 Atomic orbital electron populations 1.69969 1.06121 1.27391 1.48762 1.24948 0.94915 0.99490 0.94615 0.86410 0.79626 0.82590 0.78273 1.20428 1.21000 1.19711 1.21212 0.93300 0.90391 1.53417 0.91822 1.19155 0.88260 0.81872 0.97884 1.46457 1.11353 1.05942 1.71576 1.19909 0.88839 0.84139 0.77843 1.90679 1.16536 1.84655 1.51106 1.22280 0.97868 0.94767 0.99781 0.86878 1.22356 1.02902 0.94886 0.98333 1.20873 0.79680 0.89180 0.79348 1.90712 1.37256 1.77124 1.36011 1.48288 1.35720 1.06414 1.44584 1.20912 0.99334 0.78569 0.97513 1.22783 0.99168 0.95453 1.01612 1.23063 0.93147 1.04154 1.01047 1.22927 1.02749 0.93919 1.01681 1.21999 0.94839 0.87896 0.95705 0.92393 0.95396 0.95356 0.77482 0.87085 0.87168 0.89592 0.90099 0.87572 0.88606 0.88736 0.88731 0.88667 0.89980 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -14.25 9.28 -34.44 -0.32 -14.57 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.26 5.43 -5.19 -0.03 6.24 16 10 N -0.71 -13.59 5.54 -61.47 -0.34 -13.93 16 11 C 0.51 9.03 7.06 -10.99 -0.08 8.95 16 12 O -0.55 -11.97 15.53 5.55 0.09 -11.88 16 13 C -0.12 -1.55 3.54 -90.14 -0.32 -1.87 16 14 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.14 -1.75 6.40 -26.71 -0.17 -1.92 16 16 C 0.52 7.19 8.02 -10.83 -0.09 7.11 16 17 O -0.53 -9.10 17.59 5.56 0.10 -9.00 16 18 N -0.62 -7.25 2.93 -172.39 -0.51 -7.76 16 19 C 0.16 1.57 6.21 -4.04 -0.03 1.54 16 20 C -0.17 -1.70 6.01 -90.62 -0.54 -2.24 16 21 C -0.18 -1.49 10.18 -26.73 -0.27 -1.76 16 22 C -0.18 -1.41 10.25 -26.74 -0.27 -1.69 16 23 C 0.12 1.39 6.69 -3.12 -0.02 1.37 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.39 6.41 8.32 -40.82 -0.34 6.07 16 28 H 0.11 1.45 7.89 -51.93 -0.41 1.04 16 29 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 31 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 32 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -32.36 326.51 -7.95 -40.31 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.69 Total: 3.91 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -2.24 Total: 2.79 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.11 Total: -46.43 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.18 Total: -20.89 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.36 -7.95 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706389603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.843 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds