Wall clock time and date at job start Mon Mar 30 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86789 * 120.00054 * 2 1 4 4 H 1.48510 * 109.46925 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47316 * 29.99851 * 3 2 1 6 6 H 1.48498 * 109.47401 * 150.00086 * 3 2 1 7 7 C 1.39592 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00250 * 359.97438 * 7 2 1 9 9 N 1.36115 * 119.99617 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99825 * 179.97438 * 9 7 2 11 11 O 1.21503 * 120.00215 * 0.27585 * 10 9 7 12 12 C 1.48836 * 119.99937 * 180.02562 * 10 9 7 13 13 O 1.21440 * 119.99966 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99937 * 179.97438 * 12 10 9 15 15 C 1.46496 * 120.00258 * 179.97438 * 14 12 10 16 16 C 1.52993 * 109.47551 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47473 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.64179 * 305.42278 * 17 16 15 19 19 C 1.53025 * 109.64418 * 66.05538 * 17 16 15 20 20 C 1.50068 * 110.14708 * 169.12481 * 19 17 16 21 21 C 1.29440 * 124.07631 * 342.86295 * 20 19 17 22 22 C 1.50070 * 124.07762 * 0.47986 * 21 20 19 23 23 C 1.53030 * 110.14372 * 342.86027 * 22 21 20 24 24 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00127 * 0.02562 * 9 7 2 26 26 H 0.96999 * 120.00047 * 0.02562 * 14 12 10 27 27 H 1.09000 * 109.47024 * 300.00478 * 15 14 12 28 28 H 1.09004 * 109.46875 * 60.00324 * 15 14 12 29 29 H 1.09000 * 109.47250 * 300.00222 * 16 15 14 30 30 H 1.09004 * 109.46862 * 60.00198 * 16 15 14 31 31 H 1.09001 * 109.35440 * 289.33171 * 19 17 16 32 32 H 1.09004 * 109.35236 * 48.91415 * 19 17 16 33 33 H 1.07998 * 117.96067 * 162.85136 * 20 19 17 34 34 H 1.07997 * 117.96248 * 180.49374 * 21 20 19 35 35 H 1.08997 * 109.35760 * 222.66169 * 22 21 20 36 36 H 1.08999 * 109.35984 * 103.06866 * 22 21 20 37 37 H 1.08993 * 109.64763 * 289.75492 * 23 22 21 38 38 H 1.09006 * 109.81449 * 169.22305 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6176 0.0000 4 1 2.4917 2.0462 -1.4002 5 1 1.4416 2.6526 0.7000 6 1 3.5417 1.4401 0.7000 7 6 2.0080 -1.2089 0.0005 8 1 1.4680 -2.1442 0.0014 9 7 3.3692 -1.2089 0.0000 10 6 4.0430 -2.3762 0.0011 11 8 3.4355 -3.4284 -0.0026 12 6 5.5314 -2.3762 0.0011 13 8 6.1386 -1.3245 0.0006 14 7 6.2052 -3.5434 0.0026 15 6 7.6702 -3.5435 0.0021 16 6 8.1802 -4.9859 0.0035 17 6 9.7101 -4.9860 0.0035 18 1 10.0766 -4.3918 -0.8336 19 6 10.2246 -4.3999 1.3201 20 6 11.7013 -4.6339 1.4481 21 6 12.3619 -5.4990 0.7475 22 6 11.7452 -6.3815 -0.2979 23 6 10.2257 -6.4253 -0.1210 24 1 -0.4850 0.8400 -0.0004 25 1 3.8542 -0.3689 -0.0004 26 1 5.7202 -4.3834 0.0034 27 1 8.0332 -3.0310 -0.8888 28 1 8.0339 -3.0283 0.8912 29 1 7.8172 -5.4988 0.8941 30 1 7.8165 -5.5007 -0.8859 31 1 10.0254 -3.3284 1.3408 32 1 9.7094 -4.8772 2.1538 33 1 12.2469 -4.0438 2.1695 34 1 13.4229 -5.5916 0.9266 35 1 12.1490 -7.3896 -0.2037 36 1 11.9827 -5.9902 -1.2871 37 1 9.9778 -6.9827 0.7822 38 1 9.7668 -6.9054 -0.9854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706901964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:20 Heat of formation + Delta-G solvation = -77.223344 kcal Electronic energy + Delta-G solvation = -19418.698889 eV Core-core repulsion = 16260.532122 eV Total energy + Delta-G solvation = -3158.166768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.73704 -39.03558 -37.38235 -35.34895 -34.23114 -32.61545 -31.84795 -31.06396 -28.44807 -26.00295 -24.34213 -23.10909 -21.77810 -21.06307 -19.41007 -18.92644 -18.20980 -16.88754 -16.43189 -15.86705 -15.46953 -15.06981 -14.68608 -14.60977 -14.24023 -13.87597 -13.45766 -13.35401 -12.90712 -12.81879 -12.70070 -12.44849 -12.38689 -12.25231 -11.92512 -11.35760 -11.26502 -10.87256 -10.75208 -10.60700 -10.49448 -10.36245 -10.09314 -9.76761 -9.23844 -8.83342 -8.41954 -8.41139 -6.58515 -4.00037 2.04691 2.30724 3.04773 3.08035 3.10930 3.30419 3.96070 4.15974 4.38378 4.43475 4.51142 4.76867 4.87984 5.02923 5.06170 5.11910 5.12945 5.21022 5.31158 5.34968 5.51971 5.59724 5.61854 5.66602 5.73492 5.78419 5.89893 5.92727 6.04568 6.19046 6.41670 6.67427 6.70905 7.26630 7.66677 7.92474 8.25333 8.51980 8.75129 9.19765 9.62019 10.51604 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.046836 B = 0.003160 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.690575 B = 8858.768671 C = 9288.675319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.052 3.948 3 Si 0.876 3.124 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.309 4.309 8 H 0.127 0.873 9 N -0.527 5.527 10 C 0.404 3.596 11 O -0.580 6.580 12 C 0.513 3.487 13 O -0.551 6.551 14 N -0.713 5.713 15 C 0.118 3.882 16 C -0.128 4.128 17 C -0.083 4.083 18 H 0.076 0.924 19 C -0.092 4.092 20 C -0.151 4.151 21 C -0.162 4.162 22 C -0.091 4.091 23 C -0.115 4.115 24 H 0.281 0.719 25 H 0.384 0.616 26 H 0.411 0.589 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.649 -9.009 0.610 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.156 4.156 3 Si 0.701 3.299 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.438 4.438 8 H 0.145 0.855 9 N -0.164 5.164 10 C 0.189 3.811 11 O -0.466 6.466 12 C 0.297 3.703 13 O -0.429 6.429 14 N -0.367 5.367 15 C -0.005 4.005 16 C -0.165 4.165 17 C -0.102 4.102 18 H 0.095 0.905 19 C -0.129 4.129 20 C -0.169 4.169 21 C -0.180 4.180 22 C -0.128 4.128 23 C -0.153 4.153 24 H 0.092 0.908 25 H 0.218 0.782 26 H 0.247 0.753 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.492 -8.819 0.613 23.239 hybrid contribution 0.452 0.984 0.084 1.086 sum 21.944 -7.835 0.697 23.311 Atomic orbital electron populations 1.69442 1.06115 1.28639 1.44494 1.25237 0.95556 0.98604 0.96216 0.86670 0.80426 0.83020 0.79796 1.18896 1.19545 1.18422 1.19562 0.79146 0.97074 1.48053 0.85508 1.41829 1.07573 1.06954 1.60072 1.18859 0.86477 0.85267 0.90521 1.90619 1.68811 1.30357 1.56803 1.20624 0.89819 0.83610 0.76251 1.90674 1.70932 1.31386 1.49900 1.45674 1.06618 1.09399 1.74976 1.21391 0.79874 0.96913 1.02363 1.21871 0.95237 0.96159 1.03264 1.21140 0.94027 0.96822 0.98224 0.90548 1.20612 0.93001 1.01642 0.97657 1.22094 0.96325 0.98641 0.99842 1.22033 0.99453 0.98090 0.98456 1.20443 0.95314 0.99012 0.98020 1.21657 0.95021 0.96355 1.02236 0.90787 0.78151 0.75322 0.91612 0.91405 0.90929 0.90848 0.90580 0.90569 0.88102 0.88271 0.91228 0.90965 0.91641 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.72 13.94 55.53 0.77 -22.95 16 2 C 0.05 1.40 5.51 -17.40 -0.10 1.30 16 3 Si 0.88 19.46 27.74 -169.99 -4.72 14.74 16 4 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.60 6.53 56.52 0.37 -5.23 16 7 C -0.31 -8.67 10.16 -15.15 -0.15 -8.83 16 8 H 0.13 3.96 7.36 -52.49 -0.39 3.57 16 9 N -0.53 -13.44 5.06 -11.59 -0.06 -13.50 16 10 C 0.40 9.87 7.82 -11.87 -0.09 9.78 16 11 O -0.58 -15.36 16.03 5.36 0.09 -15.28 16 12 C 0.51 10.65 7.87 -11.87 -0.09 10.56 16 13 O -0.55 -12.23 16.47 5.42 0.09 -12.14 16 14 N -0.71 -11.51 5.55 -60.93 -0.34 -11.85 16 15 C 0.12 1.49 5.46 -4.05 -0.02 1.47 16 16 C -0.13 -1.18 4.80 -26.74 -0.13 -1.30 16 17 C -0.08 -0.69 2.23 -90.40 -0.20 -0.89 16 18 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 19 C -0.09 -0.79 4.94 -28.18 -0.14 -0.93 16 20 C -0.15 -1.25 9.80 -35.90 -0.35 -1.60 16 21 C -0.16 -1.26 9.80 -35.90 -0.35 -1.61 16 22 C -0.09 -0.64 6.12 -28.17 -0.17 -0.81 16 23 C -0.12 -0.85 5.31 -26.51 -0.14 -0.99 16 24 H 0.28 7.16 8.30 -40.82 -0.34 6.83 16 25 H 0.38 9.20 5.22 -40.82 -0.21 8.99 16 26 H 0.41 6.22 7.93 -40.82 -0.32 5.90 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.87 6.86 -51.93 -0.36 0.51 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.68 7.15 -51.93 -0.37 0.31 16 32 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 33 H 0.10 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -31.07 317.40 -6.78 -37.86 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.46 Total: 12.18 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.94 Total: 6.15 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.38 Total: -48.30 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: 0.18 Total: -27.42 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.72 Total: 14.74 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.07 -6.78 -37.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706901964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.366 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds