Wall clock time and date at job start Mon Mar 30 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86789 * 120.00054 * 2 1 4 4 H 1.48510 * 109.46925 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47316 * 29.99851 * 3 2 1 6 6 H 1.48498 * 109.47401 * 150.00086 * 3 2 1 7 7 C 1.39592 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00250 * 359.97438 * 7 2 1 9 9 N 1.36115 * 119.99617 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99825 * 179.97438 * 9 7 2 11 11 O 1.21503 * 120.00215 * 0.27585 * 10 9 7 12 12 C 1.48836 * 119.99937 * 180.02562 * 10 9 7 13 13 O 1.21440 * 119.99966 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99937 * 179.97438 * 12 10 9 15 15 C 1.46496 * 120.00258 * 179.97438 * 14 12 10 16 16 C 1.52993 * 109.47551 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47473 * 180.02562 * 16 15 14 18 18 H 1.09004 * 109.64179 * 305.42278 * 17 16 15 19 19 C 1.53025 * 109.64418 * 66.05538 * 17 16 15 20 20 C 1.50068 * 110.14708 * 169.12481 * 19 17 16 21 21 C 1.29440 * 124.07631 * 342.86295 * 20 19 17 22 22 C 1.50070 * 124.07762 * 0.47986 * 21 20 19 23 23 C 1.53030 * 110.14372 * 342.86027 * 22 21 20 24 24 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00127 * 0.02562 * 9 7 2 26 26 H 0.96999 * 120.00047 * 0.02562 * 14 12 10 27 27 H 1.09000 * 109.47024 * 300.00478 * 15 14 12 28 28 H 1.09004 * 109.46875 * 60.00324 * 15 14 12 29 29 H 1.09000 * 109.47250 * 300.00222 * 16 15 14 30 30 H 1.09004 * 109.46862 * 60.00198 * 16 15 14 31 31 H 1.09001 * 109.35440 * 289.33171 * 19 17 16 32 32 H 1.09004 * 109.35236 * 48.91415 * 19 17 16 33 33 H 1.07998 * 117.96067 * 162.85136 * 20 19 17 34 34 H 1.07997 * 117.96248 * 180.49374 * 21 20 19 35 35 H 1.08997 * 109.35760 * 222.66169 * 22 21 20 36 36 H 1.08999 * 109.35984 * 103.06866 * 22 21 20 37 37 H 1.08993 * 109.64763 * 289.75492 * 23 22 21 38 38 H 1.09006 * 109.81449 * 169.22305 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6176 0.0000 4 1 2.4917 2.0462 -1.4002 5 1 1.4416 2.6526 0.7000 6 1 3.5417 1.4401 0.7000 7 6 2.0080 -1.2089 0.0005 8 1 1.4680 -2.1442 0.0014 9 7 3.3692 -1.2089 0.0000 10 6 4.0430 -2.3762 0.0011 11 8 3.4355 -3.4284 -0.0026 12 6 5.5314 -2.3762 0.0011 13 8 6.1386 -1.3245 0.0006 14 7 6.2052 -3.5434 0.0026 15 6 7.6702 -3.5435 0.0021 16 6 8.1802 -4.9859 0.0035 17 6 9.7101 -4.9860 0.0035 18 1 10.0766 -4.3918 -0.8336 19 6 10.2246 -4.3999 1.3201 20 6 11.7013 -4.6339 1.4481 21 6 12.3619 -5.4990 0.7475 22 6 11.7452 -6.3815 -0.2979 23 6 10.2257 -6.4253 -0.1210 24 1 -0.4850 0.8400 -0.0004 25 1 3.8542 -0.3689 -0.0004 26 1 5.7202 -4.3834 0.0034 27 1 8.0332 -3.0310 -0.8888 28 1 8.0339 -3.0283 0.8912 29 1 7.8172 -5.4988 0.8941 30 1 7.8165 -5.5007 -0.8859 31 1 10.0254 -3.3284 1.3408 32 1 9.7094 -4.8772 2.1538 33 1 12.2469 -4.0438 2.1695 34 1 13.4229 -5.5916 0.9266 35 1 12.1490 -7.3896 -0.2037 36 1 11.9827 -5.9902 -1.2871 37 1 9.9778 -6.9827 0.7822 38 1 9.7668 -6.9054 -0.9854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706901964.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:20 Heat of formation + Delta-G solvation = -98.697458 kcal Electronic energy + Delta-G solvation = -19419.630077 eV Core-core repulsion = 16260.532122 eV Total energy + Delta-G solvation = -3159.097955 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40906 -39.85276 -39.16426 -36.77663 -36.03996 -34.02498 -33.51197 -31.65394 -29.48610 -27.84670 -25.43642 -24.16376 -22.98747 -21.91511 -21.29192 -20.68399 -18.86087 -18.66672 -17.79052 -17.04642 -16.86330 -16.68257 -16.13855 -15.71593 -15.38161 -15.11708 -14.80466 -14.55688 -14.48307 -14.34316 -13.93684 -13.39209 -13.30696 -13.08969 -12.95966 -12.73853 -12.56225 -12.49293 -12.14458 -11.99453 -11.71504 -11.51843 -11.21522 -10.98110 -10.48123 -10.33259 -10.21042 -9.82478 -8.62853 -6.16857 0.51980 1.28918 1.33142 1.39041 1.45271 1.74905 2.10104 2.28598 3.05975 3.08704 3.69330 3.78463 3.83304 3.86481 4.18778 4.25234 4.41899 4.45026 4.52531 4.60466 4.71958 4.75376 4.93229 5.02101 5.03516 5.10433 5.14742 5.25180 5.26019 5.31774 5.37757 5.54384 5.73533 5.82763 6.08922 6.11515 6.38087 6.58825 6.92656 7.14522 7.61815 8.51686 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.046836 B = 0.003160 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.690575 B = 8858.768671 C = 9288.675319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.248 1.248 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.532 5.532 10 C 0.406 3.594 11 O -0.604 6.604 12 C 0.520 3.480 13 O -0.563 6.563 14 N -0.692 5.692 15 C 0.115 3.885 16 C -0.118 4.118 17 C -0.079 4.079 18 H 0.074 0.926 19 C -0.094 4.094 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.093 4.093 23 C -0.114 4.114 24 H 0.290 0.710 25 H 0.393 0.607 26 H 0.417 0.583 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.147 -8.750 0.440 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.195 4.195 3 Si 0.768 3.232 4 H -0.176 1.176 5 H -0.181 1.181 6 H -0.172 1.172 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.171 5.171 10 C 0.191 3.809 11 O -0.491 6.491 12 C 0.303 3.697 13 O -0.442 6.442 14 N -0.344 5.344 15 C -0.007 4.007 16 C -0.155 4.155 17 C -0.098 4.098 18 H 0.093 0.907 19 C -0.130 4.130 20 C -0.184 4.184 21 C -0.181 4.181 22 C -0.130 4.130 23 C -0.151 4.151 24 H 0.101 0.899 25 H 0.229 0.771 26 H 0.254 0.746 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 24.001 -8.598 0.442 25.498 hybrid contribution -0.255 0.717 0.138 0.774 sum 23.746 -7.881 0.580 25.026 Atomic orbital electron populations 1.69546 1.07879 1.30379 1.45119 1.26090 0.96386 1.02230 0.94745 0.85584 0.79359 0.77621 0.80621 1.17574 1.18055 1.17231 1.19175 0.80411 0.96058 1.51246 0.90394 1.41707 1.06643 1.07739 1.60983 1.19692 0.88443 0.84576 0.88232 1.90599 1.70171 1.31298 1.57030 1.19876 0.87874 0.84847 0.77143 1.90675 1.70449 1.32035 1.51043 1.45702 1.08261 1.08114 1.72338 1.21681 0.77085 0.99433 1.02517 1.21826 0.95864 0.93777 1.04070 1.21097 0.93070 0.97606 0.98013 0.90722 1.20609 0.93392 1.01231 0.97805 1.22170 0.96271 0.99373 1.00598 1.22241 1.00025 0.97677 0.98160 1.20494 0.94999 0.99530 0.97964 1.21648 0.95354 0.95504 1.02595 0.89908 0.77095 0.74581 0.91452 0.91220 0.90281 0.89928 0.91259 0.90605 0.87779 0.87376 0.90110 0.90514 0.91718 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.88 13.94 21.77 0.30 -50.57 16 2 C 0.01 0.57 5.51 85.14 0.47 1.04 16 3 Si 0.95 39.50 27.74 68.60 1.90 41.40 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.25 -9.81 6.53 99.48 0.65 -9.16 16 7 C -0.34 -19.73 10.16 84.36 0.86 -18.88 16 8 H 0.08 5.19 7.36 -2.91 -0.02 5.17 16 9 N -0.53 -27.35 5.06 -308.87 -1.56 -28.91 16 10 C 0.41 19.89 7.82 87.08 0.68 20.57 16 11 O -0.60 -32.58 16.03 -3.72 -0.06 -32.64 16 12 C 0.52 20.96 7.87 87.08 0.69 21.64 16 13 O -0.56 -23.96 16.47 -3.53 -0.06 -24.02 16 14 N -0.69 -21.08 5.55 -465.02 -2.58 -23.66 16 15 C 0.12 2.64 5.46 86.38 0.47 3.11 16 16 C -0.12 -1.87 4.80 30.59 0.15 -1.73 16 17 C -0.08 -1.13 2.23 -10.65 -0.02 -1.15 16 18 H 0.07 1.12 8.13 -2.38 -0.02 1.10 16 19 C -0.09 -1.44 4.94 29.66 0.15 -1.29 16 20 C -0.17 -2.48 9.80 27.04 0.27 -2.22 16 21 C -0.16 -2.20 9.80 27.04 0.27 -1.93 16 22 C -0.09 -1.08 6.12 29.66 0.18 -0.89 16 23 C -0.11 -1.39 5.31 30.74 0.16 -1.22 16 24 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 25 H 0.39 18.49 5.22 -92.71 -0.48 18.00 16 26 H 0.42 11.90 7.93 -92.71 -0.74 11.17 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.64 6.86 -2.38 -0.02 1.62 16 29 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 30 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 1.14 7.15 -2.39 -0.02 1.12 16 32 H 0.08 1.15 8.06 -2.39 -0.02 1.13 16 33 H 0.10 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.11 1.24 8.06 -2.91 -0.02 1.21 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 38 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -68.02 317.40 2.05 -65.96 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.20 Total: 35.38 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 4.31 Total: 17.05 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -3.84 Total: -103.14 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -0.12 Total: -56.66 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.90 Total: 41.40 kcal Total: -68.02 2.05 -65.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706901964.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.735 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds