Wall clock time and date at job start Mon Mar 30 2020 04:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86800 * 119.99892 * 2 1 4 4 H 1.48499 * 109.47184 * 269.99928 * 3 2 1 5 5 H 1.48495 * 109.47004 * 30.00335 * 3 2 1 6 6 H 1.48503 * 109.46668 * 150.00212 * 3 2 1 7 7 C 1.39588 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99823 * 0.02562 * 7 2 1 9 9 N 1.36114 * 120.00225 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00092 * 179.97438 * 9 7 2 11 11 O 1.21505 * 119.99795 * 0.02562 * 10 9 7 12 12 C 1.48828 * 120.00216 * 180.02562 * 10 9 7 13 13 O 1.21441 * 119.99921 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00216 * 179.97438 * 12 10 9 15 15 C 1.46502 * 119.99982 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.46823 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46905 * 180.02562 * 16 15 14 18 18 H 1.08996 * 109.81368 * 54.47031 * 17 16 15 19 19 C 1.53022 * 109.63993 * 293.94338 * 17 16 15 20 20 C 1.50074 * 110.14426 * 190.87716 * 19 17 16 21 21 C 1.29445 * 124.07514 * 17.13768 * 20 19 17 22 22 C 1.50066 * 124.07462 * 359.52270 * 21 20 19 23 23 C 1.53020 * 110.14929 * 17.13805 * 22 21 20 24 24 H 0.96995 * 120.00430 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00246 * 359.97438 * 9 7 2 26 26 H 0.97001 * 119.99783 * 0.02562 * 14 12 10 27 27 H 1.09004 * 109.46602 * 60.00703 * 15 14 12 28 28 H 1.09000 * 109.47328 * 300.00459 * 15 14 12 29 29 H 1.08993 * 109.47163 * 60.00383 * 16 15 14 30 30 H 1.09000 * 109.47447 * 300.00268 * 16 15 14 31 31 H 1.08995 * 109.36175 * 311.08579 * 19 17 16 32 32 H 1.09007 * 109.35760 * 70.81533 * 19 17 16 33 33 H 1.08001 * 117.96056 * 197.15499 * 20 19 17 34 34 H 1.08002 * 117.96033 * 179.81016 * 21 20 19 35 35 H 1.08999 * 109.35552 * 137.34338 * 22 21 20 36 36 H 1.08998 * 109.35877 * 257.06324 * 22 21 20 37 37 H 1.08995 * 109.64347 * 70.24041 * 23 22 21 38 38 H 1.08992 * 109.64631 * 190.87834 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0464 -1.4001 5 1 1.4415 2.6526 0.7001 6 1 3.5417 1.4401 0.7000 7 6 2.0081 -1.2088 -0.0005 8 1 1.4680 -2.1442 -0.0014 9 7 3.3692 -1.2089 -0.0011 10 6 4.0431 -2.3761 -0.0011 11 8 3.4356 -3.4283 -0.0011 12 6 5.5314 -2.3761 -0.0011 13 8 6.1386 -1.3244 -0.0015 14 7 6.2053 -3.5433 -0.0005 15 6 7.6703 -3.5433 -0.0011 16 6 8.1802 -4.9858 -0.0010 17 6 9.7102 -4.9858 -0.0009 18 1 10.0797 -4.3899 0.8335 19 6 10.2246 -4.4010 -1.3181 20 6 11.7015 -4.6352 -1.4458 21 6 12.3620 -5.4996 -0.7443 22 6 11.7452 -6.3810 0.3019 23 6 10.2259 -6.4250 0.1251 24 1 -0.4850 0.8400 0.0004 25 1 3.8542 -0.3689 -0.0014 26 1 5.7203 -4.3834 -0.0005 27 1 8.0339 -3.0290 0.8885 28 1 8.0333 -3.0300 -0.8915 29 1 7.8166 -5.4998 -0.8907 30 1 7.8172 -5.4995 0.8892 31 1 9.7096 -4.8792 -2.1513 32 1 10.0278 -3.3291 -1.3389 33 1 12.2471 -4.0457 -2.1678 34 1 13.4240 -5.5888 -0.9197 35 1 12.1491 -7.3891 0.2089 36 1 11.9806 -5.9873 1.2907 37 1 9.9781 -6.9833 -0.7776 38 1 9.7698 -6.9030 0.9920 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706901966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:23 Heat of formation + Delta-G solvation = -77.212246 kcal Electronic energy + Delta-G solvation = -19418.700446 eV Core-core repulsion = 16260.534159 eV Total energy + Delta-G solvation = -3158.166286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.73696 -39.03743 -37.38195 -35.34814 -34.23076 -32.61378 -31.84807 -31.06654 -28.44833 -26.00325 -24.34072 -23.10693 -21.77851 -21.06416 -19.41001 -18.92621 -18.20791 -16.88744 -16.43039 -15.86699 -15.46941 -15.06887 -14.68839 -14.61022 -14.24175 -13.87711 -13.46536 -13.34724 -12.91458 -12.81324 -12.69607 -12.44728 -12.38842 -12.25125 -11.92473 -11.35917 -11.26441 -10.87409 -10.75184 -10.60773 -10.49339 -10.36229 -10.09281 -9.76775 -9.23865 -8.83338 -8.41911 -8.41190 -6.58473 -4.00037 2.04680 2.30704 3.04783 3.08068 3.10936 3.30434 3.96072 4.15993 4.38402 4.43440 4.51184 4.76875 4.87988 5.02939 5.06107 5.12272 5.12769 5.21119 5.31138 5.35030 5.51934 5.59572 5.61784 5.66651 5.73403 5.78453 5.89997 5.92699 6.04547 6.19086 6.41635 6.67424 6.70860 7.26627 7.66668 7.92458 8.25339 8.51996 8.75140 9.19764 9.62029 10.51632 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.046840 B = 0.003160 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.632506 B = 8859.069196 C = 9288.652835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.052 3.948 3 Si 0.876 3.124 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.309 4.309 8 H 0.127 0.873 9 N -0.527 5.527 10 C 0.404 3.596 11 O -0.580 6.580 12 C 0.513 3.487 13 O -0.551 6.551 14 N -0.713 5.713 15 C 0.118 3.882 16 C -0.127 4.127 17 C -0.083 4.083 18 H 0.076 0.924 19 C -0.092 4.092 20 C -0.151 4.151 21 C -0.162 4.162 22 C -0.091 4.091 23 C -0.115 4.115 24 H 0.281 0.719 25 H 0.384 0.616 26 H 0.411 0.589 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.646 -9.010 -0.605 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.156 4.156 3 Si 0.701 3.299 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.438 4.438 8 H 0.145 0.855 9 N -0.164 5.164 10 C 0.189 3.811 11 O -0.466 6.466 12 C 0.297 3.703 13 O -0.429 6.429 14 N -0.367 5.367 15 C -0.005 4.005 16 C -0.165 4.165 17 C -0.102 4.102 18 H 0.095 0.905 19 C -0.129 4.129 20 C -0.169 4.169 21 C -0.180 4.180 22 C -0.128 4.128 23 C -0.153 4.153 24 H 0.092 0.908 25 H 0.218 0.782 26 H 0.247 0.753 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.490 -8.819 -0.608 23.237 hybrid contribution 0.455 0.986 -0.065 1.088 sum 21.945 -7.833 -0.673 23.311 Atomic orbital electron populations 1.69439 1.06114 1.28641 1.44497 1.25235 0.95553 0.98599 0.96215 0.86672 0.80433 0.83028 0.79793 1.18898 1.19543 1.18420 1.19562 0.79147 0.97075 1.48051 0.85508 1.41827 1.07572 1.06955 1.60071 1.18858 0.86479 0.85267 0.90523 1.90619 1.68809 1.30359 1.56803 1.20621 0.89818 0.83611 0.76252 1.90675 1.70932 1.31386 1.49901 1.45677 1.06618 1.09398 1.74976 1.21393 0.79870 0.96913 1.02365 1.21867 0.95217 0.96158 1.03267 1.21141 0.94027 0.96820 0.98228 0.90549 1.20619 0.93002 1.01632 0.97670 1.22102 0.96343 0.98616 0.99859 1.22036 0.99447 0.98094 0.98462 1.20449 0.95336 0.99021 0.98004 1.21660 0.95035 0.96368 1.02212 0.90785 0.78153 0.75321 0.91606 0.91406 0.90914 0.90855 0.90562 0.90578 0.88102 0.88275 0.91212 0.90968 0.91618 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.72 13.94 55.53 0.77 -22.95 16 2 C 0.05 1.40 5.51 -17.40 -0.10 1.31 16 3 Si 0.88 19.46 27.74 -169.99 -4.72 14.74 16 4 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.60 6.53 56.52 0.37 -5.23 16 7 C -0.31 -8.67 10.16 -15.15 -0.15 -8.83 16 8 H 0.13 3.96 7.37 -52.48 -0.39 3.57 16 9 N -0.53 -13.44 5.06 -11.59 -0.06 -13.50 16 10 C 0.40 9.87 7.82 -11.88 -0.09 9.78 16 11 O -0.58 -15.36 16.03 5.36 0.09 -15.28 16 12 C 0.51 10.65 7.87 -11.88 -0.09 10.56 16 13 O -0.55 -12.23 16.47 5.42 0.09 -12.14 16 14 N -0.71 -11.51 5.55 -60.93 -0.34 -11.85 16 15 C 0.12 1.49 5.46 -4.04 -0.02 1.47 16 16 C -0.13 -1.17 4.80 -26.73 -0.13 -1.30 16 17 C -0.08 -0.69 2.24 -90.40 -0.20 -0.89 16 18 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 19 C -0.09 -0.79 4.94 -28.17 -0.14 -0.93 16 20 C -0.15 -1.25 9.80 -35.90 -0.35 -1.60 16 21 C -0.16 -1.26 9.80 -35.90 -0.35 -1.61 16 22 C -0.09 -0.64 6.11 -28.18 -0.17 -0.81 16 23 C -0.12 -0.85 5.31 -26.51 -0.14 -0.99 16 24 H 0.28 7.16 8.30 -40.82 -0.34 6.83 16 25 H 0.38 9.20 5.22 -40.82 -0.21 8.99 16 26 H 0.41 6.22 7.93 -40.82 -0.32 5.90 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.87 6.87 -51.93 -0.36 0.51 16 29 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 32 H 0.08 0.68 7.16 -51.93 -0.37 0.30 16 33 H 0.10 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -31.07 317.40 -6.78 -37.86 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.46 Total: 12.18 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.94 Total: 6.15 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.38 Total: -48.30 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: 0.18 Total: -27.41 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.72 Total: 14.74 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.07 -6.78 -37.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706901966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.354 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds