Wall clock time and date at job start Mon Mar 30 2020 04:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.51298 * 111.78426 * 2 1 4 4 C 1.52586 * 111.59076 * 191.00849 * 3 2 1 5 5 C 1.53151 * 108.71998 * 56.83257 * 4 3 2 6 6 C 1.52516 * 108.83549 * 291.55895 * 5 4 3 7 7 C 1.51955 * 111.47166 * 57.45854 * 6 5 4 8 8 H 1.09007 * 112.47868 * 96.67030 * 7 6 5 9 9 C 1.54359 * 112.18222 * 225.55881 * 7 6 5 10 10 N 1.47064 * 111.08102 * 129.50691 * 2 1 3 11 11 C 1.34783 * 134.81182 * 267.52225 * 10 2 1 12 12 O 1.21440 * 119.99890 * 0.06209 * 11 10 2 13 13 C 1.48834 * 119.99827 * 180.02562 * 11 10 2 14 14 O 1.21506 * 120.00152 * 359.97438 * 13 11 10 15 15 N 1.34778 * 119.99467 * 180.02562 * 13 11 10 16 16 C 1.36120 * 119.99392 * 180.02562 * 15 13 11 17 17 H 1.08000 * 120.00129 * 359.97438 * 16 15 13 18 18 C 1.39584 * 119.99583 * 179.97438 * 16 15 13 19 19 N 1.31020 * 119.99742 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00302 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46978 * 89.99890 * 20 18 16 22 22 H 1.48501 * 109.47233 * 209.99878 * 20 18 16 23 23 H 1.48499 * 109.46744 * 329.99818 * 20 18 16 24 24 H 1.08993 * 109.47289 * 69.66935 * 1 2 3 25 25 H 1.09008 * 109.47068 * 189.67174 * 1 2 3 26 26 H 1.08996 * 109.46812 * 309.66431 * 1 2 3 27 27 H 1.09002 * 109.04564 * 70.48690 * 3 2 1 28 28 H 1.08997 * 109.04243 * 311.52895 * 3 2 1 29 29 H 1.09004 * 109.59274 * 176.59970 * 4 3 2 30 30 H 1.08991 * 109.59417 * 296.90480 * 4 3 2 31 31 H 1.08988 * 109.57890 * 51.37435 * 5 4 3 32 32 H 1.09005 * 109.56804 * 171.75902 * 5 4 3 33 33 H 1.09000 * 109.07215 * 177.96786 * 6 5 4 34 34 H 1.08993 * 109.08004 * 296.93936 * 6 5 4 35 35 H 1.08993 * 113.80432 * 208.26460 * 9 7 6 36 36 H 1.08998 * 113.80681 * 339.78468 * 9 7 6 37 37 H 0.97002 * 120.00340 * 359.97438 * 15 13 11 38 38 H 0.97001 * 120.00009 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0915 1.4049 0.0000 4 6 3.5931 1.4095 -0.2709 5 6 3.8538 0.7054 -1.6058 6 6 3.5365 -0.7782 -1.4502 7 6 2.1030 -0.9957 -0.9956 8 1 1.4298 -1.2076 -1.8264 9 6 2.0039 -2.0317 0.1445 10 7 2.0590 -0.8730 1.0587 11 6 2.4392 -0.6903 2.3388 12 8 2.3710 0.4133 2.8410 13 6 2.9420 -1.8414 3.1372 14 8 3.0092 -2.9458 2.6352 15 7 3.3217 -1.6588 4.4175 16 6 3.7820 -2.7114 5.1475 17 1 3.8425 -3.6930 4.7010 18 6 4.1757 -2.5223 6.4732 19 7 4.6183 -3.5356 7.1760 20 14 4.0718 -0.8244 7.2453 21 1 2.7392 -0.6486 7.8766 22 1 5.1306 -0.6841 8.2770 23 1 4.2628 0.2089 6.1961 24 1 -0.3633 0.3570 -0.9636 25 1 -0.3633 -1.0131 0.1727 26 1 -0.3633 0.6559 0.7911 27 1 1.9039 1.8630 0.9712 28 1 1.5891 1.9887 -0.7713 29 1 3.9519 2.4374 -0.3236 30 1 4.1107 0.8822 0.5303 31 1 3.2156 1.1366 -2.3769 32 1 4.9005 0.8278 -1.8847 33 1 3.6861 -1.2768 -2.4079 34 1 4.2134 -1.2121 -0.7144 35 1 1.0554 -2.5678 0.1704 36 1 2.8692 -2.6905 0.2166 37 1 3.2677 -0.7771 4.8184 38 1 4.8923 -3.4041 8.0972 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707196407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:52 Heat of formation + Delta-G solvation = -43.619560 kcal Electronic energy + Delta-G solvation = -21206.719262 eV Core-core repulsion = 18050.009663 eV Total energy + Delta-G solvation = -3156.709598 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.28378 -38.73940 -36.90932 -34.98330 -34.13959 -31.98040 -31.88351 -30.23578 -27.22300 -25.84425 -25.22946 -23.26395 -21.78473 -21.00368 -19.48458 -18.95167 -17.33542 -16.62930 -15.97283 -15.78983 -15.08629 -14.85368 -14.45358 -14.22964 -14.02637 -13.75457 -13.24740 -13.02019 -12.76864 -12.47798 -12.39932 -12.30140 -11.82822 -11.77909 -11.69731 -11.36382 -11.26482 -11.00205 -10.73063 -10.60625 -10.40938 -10.36069 -10.07971 -9.77901 -9.73601 -8.41195 -8.35091 -8.24476 -6.55647 -3.97319 2.36580 2.97175 3.06058 3.09963 3.12382 3.98020 4.18065 4.22351 4.47210 4.69534 4.86453 4.88346 5.07009 5.15334 5.22153 5.27866 5.34868 5.46435 5.49669 5.60355 5.65487 5.76207 5.78464 5.86023 5.94142 5.98496 6.07010 6.14574 6.20408 6.25070 6.34752 6.41208 6.50690 7.30597 7.91000 8.00395 8.23142 8.55655 8.79365 9.23230 9.66068 10.54753 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028819 B = 0.005562 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.351738 B = 5032.830391 C = 5244.593911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.170 3.830 3 C -0.115 4.115 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.101 4.101 7 C -0.116 4.116 8 H 0.089 0.911 9 C 0.117 3.883 10 N -0.613 5.613 11 C 0.536 3.464 12 O -0.550 6.550 13 C 0.410 3.590 14 O -0.574 6.574 15 N -0.532 5.532 16 C -0.308 4.308 17 H 0.126 0.874 18 C 0.052 3.948 19 N -0.853 5.853 20 Si 0.875 3.125 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.260 1.260 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.383 0.617 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.009 8.685 -16.311 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.086 3.914 3 C -0.153 4.153 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.138 4.138 7 C -0.135 4.135 8 H 0.107 0.893 9 C -0.006 4.006 10 N -0.350 5.350 11 C 0.324 3.676 12 O -0.429 6.429 13 C 0.195 3.805 14 O -0.460 6.460 15 N -0.169 5.169 16 C -0.438 4.438 17 H 0.144 0.856 18 C -0.155 4.155 19 N -0.490 5.490 20 Si 0.699 3.301 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.185 1.185 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.218 0.782 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.850 8.480 -15.928 18.685 hybrid contribution -0.124 1.109 0.949 1.464 sum -4.974 9.589 -14.979 18.468 Atomic orbital electron populations 1.22083 0.93732 1.02974 1.02364 1.21321 0.93763 0.92271 0.84066 1.21168 0.96157 0.94793 1.03167 1.21403 0.96000 1.00296 0.97588 1.21424 1.01009 0.95357 0.97477 1.21057 0.94599 0.96832 1.01346 1.22599 0.97908 0.96238 0.96754 0.89299 1.23428 1.03079 0.90290 0.83806 1.49748 1.63184 1.12423 1.09602 1.20328 0.77721 0.89374 0.80204 1.90652 1.55917 1.26631 1.69655 1.18877 0.89316 0.88622 0.83707 1.90594 1.60027 1.25030 1.70316 1.41826 1.53492 1.11268 1.10299 1.19529 1.39128 0.91368 0.93737 0.85603 1.25207 0.96120 0.98224 0.95993 1.69444 1.38839 1.30752 1.09969 0.86694 0.79502 0.83475 0.80385 1.18966 1.19561 1.18488 0.91278 0.91684 0.91833 0.90032 0.91300 0.92021 0.91682 0.92019 0.91944 0.91589 0.91333 0.90080 0.88641 0.78249 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.00 37.16 0.33 -1.40 16 2 C 0.17 2.25 1.41 -133.09 -0.19 2.06 16 3 C -0.12 -1.48 4.76 -27.80 -0.13 -1.61 16 4 C -0.12 -1.46 5.85 -26.87 -0.16 -1.62 16 5 C -0.12 -1.19 5.92 -26.90 -0.16 -1.35 16 6 C -0.10 -1.11 5.60 -27.51 -0.15 -1.26 16 7 C -0.12 -1.31 3.76 -91.00 -0.34 -1.65 16 8 H 0.09 0.78 8.03 -51.92 -0.42 0.36 16 9 C 0.12 1.70 6.71 -2.90 -0.02 1.68 16 10 N -0.61 -10.63 3.10 -167.16 -0.52 -11.14 16 11 C 0.54 11.61 8.01 -11.87 -0.10 11.52 16 12 O -0.55 -12.51 15.79 5.42 0.09 -12.43 16 13 C 0.41 10.26 7.82 -11.87 -0.09 10.17 16 14 O -0.57 -15.33 14.67 5.36 0.08 -15.25 16 15 N -0.53 -13.81 5.06 -11.59 -0.06 -13.87 16 16 C -0.31 -8.77 10.16 -15.15 -0.15 -8.92 16 17 H 0.13 3.97 7.36 -52.49 -0.39 3.59 16 18 C 0.05 1.42 5.51 -17.40 -0.10 1.33 16 19 N -0.85 -24.09 13.94 55.53 0.77 -23.31 16 20 Si 0.87 19.81 27.74 -169.99 -4.72 15.09 16 21 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.26 -5.74 6.53 56.52 0.37 -5.38 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.74 7.04 -51.92 -0.37 0.37 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 1.26 7.04 -51.93 -0.37 0.89 16 28 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 31 H 0.06 0.55 8.12 -51.94 -0.42 0.13 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.91 7.55 -51.93 -0.39 0.52 16 35 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 36 H 0.10 1.54 7.10 -51.93 -0.37 1.17 16 37 H 0.38 9.41 5.22 -40.82 -0.21 9.20 16 38 H 0.28 7.24 8.30 -40.82 -0.34 6.90 16 LS Contribution 305.66 15.07 4.61 4.61 Total: -1.00 -31.44 305.66 -6.44 -37.88 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.44 Total: 9.48 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -1.25 Total: 8.94 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.20 Total: -48.32 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: 0.16 Total: -27.67 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.72 Total: 15.09 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.44 -6.44 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707196407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.737 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds