Wall clock time and date at job start Mon Mar 30 2020 04:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.51298 * 111.78426 * 2 1 4 4 C 1.52586 * 111.59076 * 191.00849 * 3 2 1 5 5 C 1.53151 * 108.71998 * 56.83257 * 4 3 2 6 6 C 1.52516 * 108.83549 * 291.55895 * 5 4 3 7 7 C 1.51955 * 111.47166 * 57.45854 * 6 5 4 8 8 H 1.09007 * 112.47868 * 96.67030 * 7 6 5 9 9 C 1.54359 * 112.18222 * 225.55881 * 7 6 5 10 10 N 1.47064 * 111.08102 * 129.50691 * 2 1 3 11 11 C 1.34783 * 134.81182 * 267.52225 * 10 2 1 12 12 O 1.21440 * 119.99890 * 0.06209 * 11 10 2 13 13 C 1.48834 * 119.99827 * 180.02562 * 11 10 2 14 14 O 1.21506 * 120.00152 * 359.97438 * 13 11 10 15 15 N 1.34778 * 119.99467 * 180.02562 * 13 11 10 16 16 C 1.36120 * 119.99392 * 180.02562 * 15 13 11 17 17 H 1.08000 * 120.00129 * 359.97438 * 16 15 13 18 18 C 1.39584 * 119.99583 * 179.97438 * 16 15 13 19 19 N 1.31020 * 119.99742 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00302 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46978 * 89.99890 * 20 18 16 22 22 H 1.48501 * 109.47233 * 209.99878 * 20 18 16 23 23 H 1.48499 * 109.46744 * 329.99818 * 20 18 16 24 24 H 1.08993 * 109.47289 * 69.66935 * 1 2 3 25 25 H 1.09008 * 109.47068 * 189.67174 * 1 2 3 26 26 H 1.08996 * 109.46812 * 309.66431 * 1 2 3 27 27 H 1.09002 * 109.04564 * 70.48690 * 3 2 1 28 28 H 1.08997 * 109.04243 * 311.52895 * 3 2 1 29 29 H 1.09004 * 109.59274 * 176.59970 * 4 3 2 30 30 H 1.08991 * 109.59417 * 296.90480 * 4 3 2 31 31 H 1.08988 * 109.57890 * 51.37435 * 5 4 3 32 32 H 1.09005 * 109.56804 * 171.75902 * 5 4 3 33 33 H 1.09000 * 109.07215 * 177.96786 * 6 5 4 34 34 H 1.08993 * 109.08004 * 296.93936 * 6 5 4 35 35 H 1.08993 * 113.80432 * 208.26460 * 9 7 6 36 36 H 1.08998 * 113.80681 * 339.78468 * 9 7 6 37 37 H 0.97002 * 120.00340 * 359.97438 * 15 13 11 38 38 H 0.97001 * 120.00009 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0915 1.4049 0.0000 4 6 3.5931 1.4095 -0.2709 5 6 3.8538 0.7054 -1.6058 6 6 3.5365 -0.7782 -1.4502 7 6 2.1030 -0.9957 -0.9956 8 1 1.4298 -1.2076 -1.8264 9 6 2.0039 -2.0317 0.1445 10 7 2.0590 -0.8730 1.0587 11 6 2.4392 -0.6903 2.3388 12 8 2.3710 0.4133 2.8410 13 6 2.9420 -1.8414 3.1372 14 8 3.0092 -2.9458 2.6352 15 7 3.3217 -1.6588 4.4175 16 6 3.7820 -2.7114 5.1475 17 1 3.8425 -3.6930 4.7010 18 6 4.1757 -2.5223 6.4732 19 7 4.6183 -3.5356 7.1760 20 14 4.0718 -0.8244 7.2453 21 1 2.7392 -0.6486 7.8766 22 1 5.1306 -0.6841 8.2770 23 1 4.2628 0.2089 6.1961 24 1 -0.3633 0.3570 -0.9636 25 1 -0.3633 -1.0131 0.1727 26 1 -0.3633 0.6559 0.7911 27 1 1.9039 1.8630 0.9712 28 1 1.5891 1.9887 -0.7713 29 1 3.9519 2.4374 -0.3236 30 1 4.1107 0.8822 0.5303 31 1 3.2156 1.1366 -2.3769 32 1 4.9005 0.8278 -1.8847 33 1 3.6861 -1.2768 -2.4079 34 1 4.2134 -1.2121 -0.7144 35 1 1.0554 -2.5678 0.1704 36 1 2.8692 -2.6905 0.2166 37 1 3.2677 -0.7771 4.8184 38 1 4.8923 -3.4041 8.0972 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707196407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:52 Heat of formation + Delta-G solvation = -65.736451 kcal Electronic energy + Delta-G solvation = -21207.678322 eV Core-core repulsion = 18050.009663 eV Total energy + Delta-G solvation = -3157.668659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.51071 -40.57540 -38.71988 -36.46404 -35.81849 -33.99827 -32.94612 -31.53335 -28.42186 -27.69500 -26.28941 -24.83240 -23.02098 -22.14292 -21.29010 -20.62999 -18.84975 -18.37926 -17.41461 -17.20629 -16.82863 -16.31793 -15.88076 -15.49136 -15.35233 -15.01735 -14.89637 -14.55333 -14.46535 -14.17330 -13.75014 -13.36666 -13.12830 -12.86229 -12.74921 -12.66451 -12.60126 -12.41024 -12.34508 -12.01836 -11.99324 -11.74554 -11.47539 -11.31818 -10.84155 -10.50090 -10.13937 -9.72401 -8.65508 -6.19183 0.54277 1.23824 1.28323 1.33842 1.51972 2.06214 2.28437 2.78259 3.03720 3.22980 3.65742 3.75004 3.85620 3.87855 4.10620 4.27352 4.30706 4.40805 4.51905 4.58803 4.69702 4.75855 4.84452 4.87755 4.98830 5.03449 5.12581 5.16293 5.21057 5.24617 5.27629 5.40036 5.43897 5.57211 5.70554 6.21427 6.50339 6.53450 6.87602 7.14498 7.60864 8.49399 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028819 B = 0.005562 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.351738 B = 5032.830391 C = 5244.593911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 C -0.115 4.115 4 C -0.118 4.118 5 C -0.108 4.108 6 C -0.105 4.105 7 C -0.090 4.090 8 H 0.137 0.863 9 C 0.102 3.898 10 N -0.613 5.613 11 C 0.535 3.465 12 O -0.567 6.567 13 C 0.408 3.592 14 O -0.597 6.597 15 N -0.538 5.538 16 C -0.339 4.339 17 H 0.077 0.923 18 C 0.012 3.988 19 N -0.893 5.893 20 Si 0.947 3.053 21 H -0.252 1.252 22 H -0.253 1.253 23 H -0.253 1.253 24 H 0.110 0.890 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.020 0.980 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.032 0.968 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.391 0.609 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 11.083 -18.961 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.080 3.920 3 C -0.152 4.152 4 C -0.156 4.156 5 C -0.145 4.145 6 C -0.142 4.142 7 C -0.109 4.109 8 H 0.154 0.846 9 C -0.020 4.020 10 N -0.347 5.347 11 C 0.321 3.679 12 O -0.448 6.448 13 C 0.193 3.807 14 O -0.483 6.483 15 N -0.176 5.176 16 C -0.468 4.468 17 H 0.095 0.905 18 C -0.193 4.193 19 N -0.530 5.530 20 Si 0.766 3.234 21 H -0.176 1.176 22 H -0.177 1.177 23 H -0.178 1.178 24 H 0.129 0.871 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.039 0.961 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.051 0.949 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.226 0.774 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.261 10.854 -18.622 22.445 hybrid contribution 0.296 0.268 1.597 1.646 sum -5.965 11.122 -17.025 21.193 Atomic orbital electron populations 1.22103 0.91583 1.02879 1.04197 1.21857 0.95399 0.92465 0.82263 1.21195 0.96489 0.94740 1.02795 1.21420 0.95658 1.00772 0.97714 1.21411 1.02239 0.94340 0.96523 1.21129 0.93613 0.97673 1.01787 1.22572 0.98946 0.92912 0.96468 0.84562 1.23742 1.02986 0.90454 0.84796 1.50100 1.61031 1.15257 1.08351 1.19599 0.78791 0.87791 0.81728 1.90631 1.57197 1.26376 1.70564 1.19798 0.87614 0.89630 0.83654 1.90563 1.60315 1.26563 1.70887 1.41722 1.54284 1.10922 1.10704 1.19144 1.42188 0.90435 0.95045 0.90518 1.26033 0.94715 1.02858 0.95668 1.69545 1.39400 1.33274 1.10824 0.85618 0.80511 0.77582 0.79660 1.17563 1.17710 1.17763 0.87148 0.91787 0.93281 0.93129 0.87440 0.90880 0.96135 0.88924 0.91289 0.88570 0.94889 0.88342 0.91094 0.77361 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.00 71.98 0.65 -2.17 16 2 C 0.16 3.84 1.41 2.47 0.00 3.85 16 3 C -0.11 -2.66 4.76 29.90 0.14 -2.51 16 4 C -0.12 -2.81 5.85 30.51 0.18 -2.63 16 5 C -0.11 -1.85 5.92 30.48 0.18 -1.67 16 6 C -0.10 -2.00 5.60 30.09 0.17 -1.83 16 7 C -0.09 -1.71 3.76 -10.98 -0.04 -1.75 16 8 H 0.14 1.48 8.03 -2.38 -0.02 1.47 16 9 C 0.10 2.87 6.71 86.47 0.58 3.45 16 10 N -0.61 -21.06 3.10 -801.10 -2.49 -23.54 16 11 C 0.54 23.80 8.01 87.08 0.70 24.50 16 12 O -0.57 -26.30 15.79 -3.53 -0.06 -26.36 16 13 C 0.41 21.40 7.82 87.08 0.68 22.08 16 14 O -0.60 -33.69 14.67 -3.73 -0.05 -33.75 16 15 N -0.54 -29.17 5.06 -308.86 -1.56 -30.73 16 16 C -0.34 -20.41 10.16 84.35 0.86 -19.55 16 17 H 0.08 5.26 7.36 -2.91 -0.02 5.24 16 18 C 0.01 0.68 5.51 85.14 0.47 1.14 16 19 N -0.89 -52.12 13.94 21.77 0.30 -51.81 16 20 Si 0.95 41.16 27.74 68.60 1.90 43.07 16 21 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 23 H -0.25 -10.66 6.53 99.48 0.65 -10.01 16 24 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.23 7.04 -2.38 -0.02 1.21 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.51 7.04 -2.39 -0.02 1.50 16 28 H 0.11 1.69 8.12 -2.39 -0.02 1.67 16 29 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.02 0.65 8.12 -2.39 -0.02 0.63 16 31 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 32 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.03 0.86 7.55 -2.39 -0.02 0.85 16 35 H 0.10 2.44 7.42 -2.39 -0.02 2.42 16 36 H 0.07 2.36 7.10 -2.39 -0.02 2.34 16 37 H 0.39 19.65 5.22 -92.71 -0.48 19.17 16 38 H 0.29 15.25 8.30 -92.71 -0.77 14.48 16 Total: -1.00 -74.42 305.66 3.14 -71.28 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.53 Total: 28.93 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 4.56 Total: 22.91 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -3.74 Total: -106.09 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -0.11 Total: -60.11 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.90 Total: 43.07 kcal Total: -74.42 3.14 -71.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707196407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.546 kcal (2) G-P(sol) polarization free energy of solvation -74.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds