Wall clock time and date at job start Mon Mar 30 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.51440 * 111.49232 * 2 1 4 4 C 1.54261 * 105.76795 * 55.04914 * 3 2 1 5 5 C 1.52370 * 112.10782 * 56.72637 * 4 3 2 6 6 C 1.53948 * 112.55256 * 306.44529 * 5 4 3 7 7 C 1.51858 * 106.25561 * 56.86305 * 6 5 4 8 8 H 1.08999 * 113.04365 * 60.83302 * 7 6 5 9 9 C 1.50812 * 123.90919 * 207.09797 * 7 6 5 10 10 N 1.43136 * 111.99806 * 212.19924 * 2 1 3 11 11 C 1.34775 * 137.97816 * 107.17839 * 10 2 1 12 12 O 1.21441 * 119.99935 * 359.97438 * 11 10 2 13 13 C 1.48828 * 119.99931 * 179.97438 * 11 10 2 14 14 O 1.21505 * 120.00189 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99931 * 179.97438 * 13 11 10 16 16 C 1.36119 * 120.00040 * 180.02562 * 15 13 11 17 17 H 1.07992 * 119.99976 * 0.02562 * 16 15 13 18 18 C 1.39583 * 120.00014 * 180.02562 * 16 15 13 19 19 N 1.31016 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47306 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.46939 * 300.00067 * 20 18 16 23 23 H 1.48504 * 109.47424 * 59.99830 * 20 18 16 24 24 H 1.09005 * 109.46693 * 221.77990 * 1 2 3 25 25 H 1.08995 * 109.47462 * 341.78210 * 1 2 3 26 26 H 1.08999 * 109.47155 * 101.78859 * 1 2 3 27 27 H 1.09006 * 110.17834 * 174.10808 * 3 2 1 28 28 H 1.09001 * 110.18841 * 295.85396 * 3 2 1 29 29 H 1.09000 * 108.95496 * 177.39860 * 4 3 2 30 30 H 1.08994 * 108.95265 * 296.04596 * 4 3 2 31 31 H 1.08998 * 108.86785 * 67.23688 * 5 4 3 32 32 H 1.08998 * 108.86672 * 185.76026 * 5 4 3 33 33 H 1.09006 * 110.09223 * 176.04103 * 6 5 4 34 34 H 1.08997 * 110.09710 * 297.56146 * 6 5 4 35 35 H 1.08994 * 113.90468 * 24.29374 * 9 7 6 36 36 H 1.09004 * 114.05993 * 252.26365 * 9 7 6 37 37 H 0.97005 * 119.99830 * 0.02562 * 15 13 11 38 38 H 0.97001 * 120.00802 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0849 1.4091 0.0000 4 6 1.4471 2.1107 1.2168 5 6 1.7249 1.3678 2.5178 6 6 1.3178 -0.1153 2.4493 7 6 2.0765 -0.7106 1.2762 8 1 3.1585 -0.6499 1.3929 9 6 1.5960 -1.8967 0.4782 10 7 2.0662 -1.1230 -0.7072 11 6 2.6883 -1.3648 -1.8781 12 8 2.9184 -0.4506 -2.6435 13 6 3.0932 -2.7523 -2.2329 14 8 2.8626 -3.6671 -1.4673 15 7 3.7149 -2.9942 -3.4040 16 6 4.0848 -4.2632 -3.7288 17 1 3.8798 -5.0763 -3.0483 18 6 4.7291 -4.5136 -4.9415 19 7 4.9783 -3.5272 -5.7669 20 14 5.2361 -6.2552 -5.3876 21 1 5.8978 -6.2530 -6.7170 22 1 6.1812 -6.7727 -4.3656 23 1 4.0330 -7.1245 -5.4344 24 1 -0.3633 -0.7664 0.6847 25 1 -0.3634 0.9761 0.3213 26 1 -0.3633 -0.2100 -1.0060 27 1 3.1696 1.3861 0.1050 28 1 1.8076 1.9226 -0.9206 29 1 1.8487 3.1211 1.2935 30 1 0.3693 2.1704 1.0663 31 1 2.7903 1.4309 2.7392 32 1 1.1689 1.8475 3.3233 33 1 1.5971 -0.6233 3.3724 34 1 0.2437 -0.2017 2.2852 35 1 0.5164 -2.0430 0.5110 36 1 2.1589 -2.8123 0.6602 37 1 3.8987 -2.2638 -4.0155 38 1 5.4263 -3.7010 -6.6095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707208890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:58 Heat of formation + Delta-G solvation = -3.153096 kcal Electronic energy + Delta-G solvation = -20865.102745 eV Core-core repulsion = 17710.147904 eV Total energy + Delta-G solvation = -3154.954841 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.94888 -38.73951 -36.85655 -35.40329 -34.12849 -31.43354 -31.30698 -29.79748 -27.43328 -25.92530 -25.63294 -23.58985 -21.39069 -20.81844 -19.33239 -18.33645 -17.55815 -16.53787 -16.22810 -15.74028 -15.24462 -15.00697 -14.44001 -14.23312 -13.86071 -13.72963 -13.28754 -12.95004 -12.66652 -12.41212 -12.23555 -11.92662 -11.80621 -11.73766 -11.62504 -11.26792 -11.15696 -10.90031 -10.63107 -10.55545 -10.42072 -10.38490 -10.23008 -9.68074 -9.31980 -8.28524 -8.19070 -8.13646 -6.63900 -3.96646 2.48287 3.01328 3.17626 3.18805 3.23317 3.99764 4.11568 4.29352 4.66023 4.72392 4.80087 4.85480 5.06304 5.11061 5.14300 5.23771 5.34014 5.38345 5.53900 5.59258 5.71461 5.74343 5.86247 5.90119 5.94981 6.00558 6.04961 6.09771 6.15949 6.24615 6.25826 6.42385 6.55024 7.33407 7.78301 8.10901 8.32506 8.65181 8.99519 9.35608 9.88622 10.51144 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044229 B = 0.004420 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.915227 B = 6333.875623 C = 6659.091371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 C -0.103 4.103 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.107 4.107 7 C -0.139 4.139 8 H 0.102 0.898 9 C 0.118 3.882 10 N -0.612 5.612 11 C 0.542 3.458 12 O -0.545 6.545 13 C 0.402 3.598 14 O -0.592 6.592 15 N -0.502 5.502 16 C -0.306 4.306 17 H 0.111 0.889 18 C 0.031 3.969 19 N -0.871 5.871 20 Si 0.940 3.060 21 H -0.281 1.281 22 H -0.269 1.269 23 H -0.269 1.269 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.404 0.596 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 8.306 13.886 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 C -0.141 4.141 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.145 4.145 7 C -0.158 4.158 8 H 0.120 0.880 9 C -0.003 4.003 10 N -0.347 5.347 11 C 0.330 3.670 12 O -0.422 6.422 13 C 0.186 3.814 14 O -0.479 6.479 15 N -0.137 5.137 16 C -0.437 4.437 17 H 0.129 0.871 18 C -0.176 4.176 19 N -0.509 5.509 20 Si 0.765 3.235 21 H -0.206 1.206 22 H -0.194 1.194 23 H -0.194 1.194 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.239 0.761 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.207 8.182 13.503 17.355 hybrid contribution 0.395 -0.292 -0.877 1.006 sum -6.811 7.890 12.625 16.372 Atomic orbital electron populations 1.22565 0.93963 1.02937 1.02843 1.21477 0.93586 0.90604 0.89438 1.21485 1.00606 0.93814 0.98245 1.21684 1.01087 0.98752 0.93927 1.21473 1.01616 0.95166 0.97134 1.21492 1.00326 0.94999 0.97649 1.23458 1.00890 0.97582 0.93868 0.87978 1.22941 1.00278 0.96301 0.80797 1.49243 1.56648 1.10814 1.17955 1.20395 0.77711 0.90558 0.78297 1.90690 1.56265 1.47045 1.48225 1.18851 0.89250 0.87622 0.85639 1.90548 1.61419 1.44851 1.51126 1.41545 1.45947 1.10617 1.15558 1.19810 1.34992 0.85624 1.03229 0.87082 1.25571 0.96315 1.00327 0.95362 1.69479 1.38591 1.32495 1.10336 0.85782 0.79149 0.80787 0.77775 1.20605 1.19402 1.19406 0.90766 0.90805 0.91978 0.91205 0.91302 0.91822 0.91394 0.92166 0.91996 0.91472 0.90798 0.88802 0.88621 0.76060 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 7.38 37.16 0.27 -1.66 16 2 C 0.14 1.93 1.97 -153.04 -0.30 1.63 16 3 C -0.10 -1.36 5.82 -26.86 -0.16 -1.51 16 4 C -0.12 -1.09 5.53 -26.39 -0.15 -1.23 16 5 C -0.12 -0.98 5.78 -26.56 -0.15 -1.13 16 6 C -0.11 -0.95 5.84 -26.82 -0.16 -1.11 16 7 C -0.14 -1.73 3.71 -91.23 -0.34 -2.07 16 8 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 9 C 0.12 1.79 7.41 -23.91 -0.18 1.61 16 10 N -0.61 -11.51 3.39 -232.91 -0.79 -12.30 16 11 C 0.54 12.72 8.13 -11.88 -0.10 12.63 16 12 O -0.55 -13.75 17.27 5.42 0.09 -13.65 16 13 C 0.40 10.57 7.82 -11.88 -0.09 10.47 16 14 O -0.59 -16.16 14.80 5.36 0.08 -16.08 16 15 N -0.50 -13.88 5.25 -11.59 -0.06 -13.94 16 16 C -0.31 -8.60 9.67 -15.15 -0.15 -8.75 16 17 H 0.11 3.17 7.15 -52.49 -0.38 2.79 16 18 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 19 N -0.87 -23.79 13.03 55.53 0.72 -23.07 16 20 Si 0.94 20.38 29.56 -169.99 -5.02 15.35 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H 0.07 0.74 4.64 -51.93 -0.24 0.50 16 25 H 0.07 0.70 5.31 -51.93 -0.28 0.43 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.00 8.12 -51.93 -0.42 0.57 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.57 5.79 -51.93 -0.30 0.27 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.59 5.85 -51.93 -0.30 0.29 16 35 H 0.09 1.21 5.57 -51.93 -0.29 0.92 16 36 H 0.10 1.62 7.15 -51.93 -0.37 1.25 16 37 H 0.40 11.29 7.35 -40.82 -0.30 10.99 16 38 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -31.72 301.39 -7.00 -38.71 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -4.97 Total: 10.83 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -1.59 Total: 9.59 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.13 Total: -49.30 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: 0.17 Total: -29.73 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.72 -7.00 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707208890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.559 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds