Wall clock time and date at job start Mon Mar 30 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.51440 * 111.49232 * 2 1 4 4 C 1.54261 * 105.76795 * 55.04914 * 3 2 1 5 5 C 1.52370 * 112.10782 * 56.72637 * 4 3 2 6 6 C 1.53948 * 112.55256 * 306.44529 * 5 4 3 7 7 C 1.51858 * 106.25561 * 56.86305 * 6 5 4 8 8 H 1.08999 * 113.04365 * 60.83302 * 7 6 5 9 9 C 1.50812 * 123.90919 * 207.09797 * 7 6 5 10 10 N 1.43136 * 111.99806 * 212.19924 * 2 1 3 11 11 C 1.34775 * 137.97816 * 107.17839 * 10 2 1 12 12 O 1.21441 * 119.99935 * 359.97438 * 11 10 2 13 13 C 1.48828 * 119.99931 * 179.97438 * 11 10 2 14 14 O 1.21505 * 120.00189 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99931 * 179.97438 * 13 11 10 16 16 C 1.36119 * 120.00040 * 180.02562 * 15 13 11 17 17 H 1.07992 * 119.99976 * 0.02562 * 16 15 13 18 18 C 1.39583 * 120.00014 * 180.02562 * 16 15 13 19 19 N 1.31016 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47306 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.46939 * 300.00067 * 20 18 16 23 23 H 1.48504 * 109.47424 * 59.99830 * 20 18 16 24 24 H 1.09005 * 109.46693 * 221.77990 * 1 2 3 25 25 H 1.08995 * 109.47462 * 341.78210 * 1 2 3 26 26 H 1.08999 * 109.47155 * 101.78859 * 1 2 3 27 27 H 1.09006 * 110.17834 * 174.10808 * 3 2 1 28 28 H 1.09001 * 110.18841 * 295.85396 * 3 2 1 29 29 H 1.09000 * 108.95496 * 177.39860 * 4 3 2 30 30 H 1.08994 * 108.95265 * 296.04596 * 4 3 2 31 31 H 1.08998 * 108.86785 * 67.23688 * 5 4 3 32 32 H 1.08998 * 108.86672 * 185.76026 * 5 4 3 33 33 H 1.09006 * 110.09223 * 176.04103 * 6 5 4 34 34 H 1.08997 * 110.09710 * 297.56146 * 6 5 4 35 35 H 1.08994 * 113.90468 * 24.29374 * 9 7 6 36 36 H 1.09004 * 114.05993 * 252.26365 * 9 7 6 37 37 H 0.97005 * 119.99830 * 0.02562 * 15 13 11 38 38 H 0.97001 * 120.00802 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0849 1.4091 0.0000 4 6 1.4471 2.1107 1.2168 5 6 1.7249 1.3678 2.5178 6 6 1.3178 -0.1153 2.4493 7 6 2.0765 -0.7106 1.2762 8 1 3.1585 -0.6499 1.3929 9 6 1.5960 -1.8967 0.4782 10 7 2.0662 -1.1230 -0.7072 11 6 2.6883 -1.3648 -1.8781 12 8 2.9184 -0.4506 -2.6435 13 6 3.0932 -2.7523 -2.2329 14 8 2.8626 -3.6671 -1.4673 15 7 3.7149 -2.9942 -3.4040 16 6 4.0848 -4.2632 -3.7288 17 1 3.8798 -5.0763 -3.0483 18 6 4.7291 -4.5136 -4.9415 19 7 4.9783 -3.5272 -5.7669 20 14 5.2361 -6.2552 -5.3876 21 1 5.8978 -6.2530 -6.7170 22 1 6.1812 -6.7727 -4.3656 23 1 4.0330 -7.1245 -5.4344 24 1 -0.3633 -0.7664 0.6847 25 1 -0.3634 0.9761 0.3213 26 1 -0.3633 -0.2100 -1.0060 27 1 3.1696 1.3861 0.1050 28 1 1.8076 1.9226 -0.9206 29 1 1.8487 3.1211 1.2935 30 1 0.3693 2.1704 1.0663 31 1 2.7903 1.4309 2.7392 32 1 1.1689 1.8475 3.3233 33 1 1.5971 -0.6233 3.3724 34 1 0.2437 -0.2017 2.2852 35 1 0.5164 -2.0430 0.5110 36 1 2.1589 -2.8123 0.6602 37 1 3.8987 -2.2638 -4.0155 38 1 5.4263 -3.7010 -6.6095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707208890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:58 Heat of formation + Delta-G solvation = -25.879908 kcal Electronic energy + Delta-G solvation = -20866.088254 eV Core-core repulsion = 17710.147904 eV Total energy + Delta-G solvation = -3155.940349 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.16687 -40.65035 -38.78378 -36.62789 -36.06656 -33.51661 -32.27614 -31.09912 -28.57308 -27.74371 -26.81870 -25.18658 -22.81386 -21.82752 -20.73694 -20.27232 -19.08046 -18.38524 -17.62285 -17.08341 -16.82316 -16.41953 -16.11239 -15.73701 -15.50778 -14.97366 -14.75271 -14.44225 -14.05433 -13.69662 -13.54743 -13.21289 -13.08431 -12.98010 -12.81454 -12.63550 -12.56777 -12.37882 -12.18105 -12.13368 -11.73496 -11.67839 -11.51621 -11.14703 -10.41931 -10.30710 -10.14664 -9.68399 -8.67915 -6.13809 0.56909 1.36507 1.46502 1.48739 1.58753 2.23693 2.33891 2.83008 3.11153 3.14408 3.71505 3.78961 3.90493 3.94674 4.12166 4.16098 4.24702 4.37925 4.49882 4.56481 4.67445 4.72247 4.81653 4.91868 4.98993 5.01519 5.09634 5.21236 5.21752 5.31386 5.33058 5.36297 5.41960 5.65271 5.66441 6.25065 6.48520 6.74468 6.96707 7.26084 7.76933 8.48070 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044229 B = 0.004420 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.915227 B = 6333.875623 C = 6659.091371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 C -0.107 4.107 4 C -0.108 4.108 5 C -0.115 4.115 6 C -0.098 4.098 7 C -0.116 4.116 8 H 0.084 0.916 9 C 0.111 3.889 10 N -0.617 5.617 11 C 0.536 3.464 12 O -0.577 6.577 13 C 0.395 3.605 14 O -0.608 6.608 15 N -0.514 5.514 16 C -0.347 4.347 17 H 0.099 0.901 18 C -0.006 4.006 19 N -0.899 5.899 20 Si 1.013 2.987 21 H -0.266 1.266 22 H -0.263 1.263 23 H -0.263 1.263 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.072 0.928 37 H 0.398 0.602 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.860 8.618 15.998 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 C -0.145 4.145 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.136 4.136 7 C -0.136 4.136 8 H 0.102 0.898 9 C -0.009 4.009 10 N -0.350 5.350 11 C 0.323 3.677 12 O -0.458 6.458 13 C 0.180 3.820 14 O -0.497 6.497 15 N -0.148 5.148 16 C -0.476 4.476 17 H 0.117 0.883 18 C -0.210 4.210 19 N -0.536 5.536 20 Si 0.833 3.167 21 H -0.190 1.190 22 H -0.188 1.188 23 H -0.187 1.187 24 H 0.116 0.884 25 H 0.122 0.878 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.233 0.767 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.677 8.513 15.675 19.836 hybrid contribution 0.818 -0.316 -1.445 1.691 sum -7.859 8.197 14.229 18.205 Atomic orbital electron populations 1.22585 0.91119 1.05581 1.02379 1.22069 0.95626 0.90478 0.88827 1.21561 0.99671 0.93551 0.99753 1.21674 1.01729 0.98882 0.92322 1.21500 1.01855 0.94667 0.97263 1.21551 1.00837 0.95035 0.96177 1.23283 1.00464 0.95036 0.94779 0.89778 1.23299 1.01757 0.96185 0.79610 1.49569 1.54590 1.14362 1.16507 1.19823 0.79109 0.88884 0.79846 1.90653 1.58242 1.47102 1.49768 1.19495 0.88382 0.89069 0.85036 1.90504 1.61856 1.45928 1.51413 1.41659 1.46643 1.10468 1.16045 1.19953 1.37544 0.85657 1.04467 0.88289 1.26592 0.95112 1.04930 0.94323 1.69557 1.38553 1.34724 1.10810 0.84718 0.78953 0.74993 0.78014 1.18992 1.18774 1.18721 0.88372 0.87824 0.94077 0.93406 0.93051 0.90644 0.89561 0.92793 0.88996 0.89643 0.88711 0.85687 0.90926 0.76724 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 7.38 71.98 0.53 -2.74 16 2 C 0.11 3.16 1.97 -8.37 -0.02 3.14 16 3 C -0.11 -2.74 5.82 30.51 0.18 -2.57 16 4 C -0.11 -1.66 5.53 30.81 0.17 -1.49 16 5 C -0.12 -1.45 5.78 30.71 0.18 -1.27 16 6 C -0.10 -1.33 5.84 30.54 0.18 -1.15 16 7 C -0.12 -2.71 3.71 -10.67 -0.04 -2.75 16 8 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 9 C 0.11 3.28 7.41 72.04 0.53 3.81 16 10 N -0.62 -23.68 3.39 ******* -3.42 -27.11 16 11 C 0.54 26.44 8.13 87.08 0.71 27.15 16 12 O -0.58 -30.73 17.27 -3.53 -0.06 -30.79 16 13 C 0.40 21.85 7.82 87.08 0.68 22.53 16 14 O -0.61 -34.62 14.80 -3.73 -0.06 -34.68 16 15 N -0.51 -29.96 5.25 -308.88 -1.62 -31.58 16 16 C -0.35 -20.27 9.67 84.35 0.82 -19.45 16 17 H 0.10 5.89 7.15 -2.91 -0.02 5.87 16 18 C -0.01 -0.30 5.51 85.14 0.47 0.17 16 19 N -0.90 -50.03 13.03 21.76 0.28 -49.75 16 20 Si 1.01 41.79 29.56 68.60 2.03 43.82 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 H 0.10 1.52 4.64 -2.38 -0.01 1.51 16 25 H 0.10 1.52 5.31 -2.39 -0.01 1.51 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 1.40 8.12 -2.38 -0.02 1.38 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.03 5.79 -2.39 -0.01 1.02 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.09 0.96 5.85 -2.39 -0.01 0.95 16 35 H 0.13 2.91 5.57 -2.39 -0.01 2.90 16 36 H 0.07 2.49 7.15 -2.38 -0.02 2.47 16 37 H 0.40 23.63 7.35 -92.70 -0.68 22.95 16 38 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 Total: -1.00 -73.23 301.39 1.95 -71.28 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.41 Total: 33.42 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 4.39 Total: 25.38 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.76 Total: -108.43 kcal Atomic # 8 Polarization: -65.35 SS G_CDS: -0.12 Total: -65.47 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -73.23 1.95 -71.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707208890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.401 kcal (2) G-P(sol) polarization free energy of solvation -73.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds