Wall clock time and date at job start Mon Mar 30 2020 04:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.51431 * 111.50089 * 2 1 4 4 C 1.54260 * 105.77145 * 304.95646 * 3 2 1 5 5 C 1.52380 * 112.10390 * 303.27216 * 4 3 2 6 6 C 1.53946 * 112.55659 * 53.54815 * 5 4 3 7 7 C 1.51852 * 106.25338 * 303.14498 * 6 5 4 8 8 H 1.09001 * 113.03899 * 299.15858 * 7 6 5 9 9 C 1.50071 * 124.12445 * 153.24240 * 7 6 5 10 10 N 1.43141 * 111.99631 * 147.81083 * 2 1 3 11 11 C 1.34773 * 137.97208 * 252.76149 * 10 2 1 12 12 O 1.21440 * 120.00277 * 0.02562 * 11 10 2 13 13 C 1.48833 * 119.99560 * 179.97438 * 11 10 2 14 14 O 1.21504 * 120.00338 * 359.97438 * 13 11 10 15 15 N 1.34773 * 119.99560 * 179.97438 * 13 11 10 16 16 C 1.36119 * 119.99839 * 179.97438 * 15 13 11 17 17 H 1.08002 * 120.00346 * 359.97438 * 16 15 13 18 18 C 1.39593 * 120.00212 * 180.02562 * 16 15 13 19 19 N 1.31011 * 119.99832 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46902 * 119.99737 * 20 18 16 23 23 H 1.48496 * 109.47132 * 239.99663 * 20 18 16 24 24 H 1.09000 * 109.47518 * 260.13048 * 1 2 3 25 25 H 1.09004 * 109.47026 * 20.13472 * 1 2 3 26 26 H 1.08998 * 109.47259 * 140.13106 * 1 2 3 27 27 H 1.09000 * 110.18149 * 64.01507 * 3 2 1 28 28 H 1.08997 * 110.18489 * 185.75913 * 3 2 1 29 29 H 1.08995 * 108.95383 * 63.94264 * 4 3 2 30 30 H 1.08991 * 108.95447 * 182.59426 * 4 3 2 31 31 H 1.08999 * 108.86231 * 174.33838 * 5 4 3 32 32 H 1.09000 * 108.86159 * 292.75665 * 5 4 3 33 33 H 1.09001 * 110.08995 * 62.32508 * 6 5 4 34 34 H 1.08994 * 110.09020 * 183.84238 * 6 5 4 35 35 H 1.09000 * 113.79617 * 107.77658 * 9 7 6 36 36 H 1.08997 * 113.96504 * 335.95301 * 9 7 6 37 37 H 0.96999 * 120.00709 * 0.27794 * 15 13 11 38 38 H 0.96996 * 120.00110 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0850 1.4089 0.0000 4 6 1.4473 2.1108 -1.2167 5 6 1.7250 1.3678 -2.5178 6 6 1.3178 -0.1153 -2.4494 7 6 2.0764 -0.7106 -1.2763 8 1 3.1584 -0.6500 -1.3931 9 6 1.6064 -1.8951 -0.4837 10 7 2.0661 -1.1232 0.7070 11 6 2.6890 -1.3649 1.8775 12 8 2.9202 -0.4506 2.6425 13 6 3.0925 -2.7528 2.2329 14 8 2.8600 -3.6678 1.4681 15 7 3.7159 -2.9944 3.4031 16 6 4.0845 -4.2637 3.7284 17 1 3.8771 -5.0773 3.0490 18 6 4.7297 -4.5142 4.9407 19 7 4.9809 -3.5275 5.7651 20 14 5.2349 -6.2562 5.3875 21 1 4.8407 -7.1815 4.2949 22 1 6.7068 -6.3118 5.5756 23 1 4.5593 -6.6599 6.6467 24 1 -0.3634 -0.1761 1.0124 25 1 -0.3633 0.9649 -0.3538 26 1 -0.3633 -0.7887 -0.6587 27 1 1.8058 1.9231 0.9197 28 1 3.1699 1.3858 -0.1027 29 1 0.3695 2.1704 -1.0662 30 1 1.8490 3.1211 -1.2933 31 1 1.1703 1.8487 -3.3235 32 1 2.7904 1.4309 -2.7392 33 1 0.2440 -0.2015 -2.2833 34 1 1.5952 -0.6227 -3.3733 35 1 2.1790 -2.8038 -0.6694 36 1 0.5284 -2.0522 -0.5195 37 1 3.8980 -2.2646 4.0155 38 1 5.4288 -3.7015 6.6077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707208892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:03 Heat of formation + Delta-G solvation = -3.628400 kcal Electronic energy + Delta-G solvation = -20866.013044 eV Core-core repulsion = 17711.037592 eV Total energy + Delta-G solvation = -3154.975451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.97103 -38.74306 -36.85945 -35.41135 -34.13095 -31.43897 -31.31861 -29.79719 -27.45236 -25.92336 -25.64258 -23.59757 -21.39000 -20.81271 -19.34324 -18.33839 -17.55794 -16.54420 -16.23258 -15.75205 -15.24702 -15.00618 -14.43552 -14.23714 -13.85680 -13.73293 -13.28843 -12.95698 -12.68044 -12.41394 -12.23665 -11.93997 -11.80870 -11.74507 -11.62353 -11.27850 -11.19705 -10.90380 -10.63181 -10.47419 -10.40980 -10.38624 -10.23229 -9.70610 -9.32299 -8.28786 -8.19203 -8.14038 -6.64259 -3.96816 2.47782 3.00962 3.15270 3.18782 3.26682 3.99514 4.11815 4.29147 4.66172 4.72600 4.80172 4.85587 5.05802 5.10923 5.14232 5.23560 5.34404 5.37990 5.54409 5.59332 5.70929 5.74602 5.85997 5.90016 5.94685 6.00307 6.05020 6.09836 6.15893 6.24390 6.25738 6.42183 6.55028 7.33576 7.78733 8.10664 8.32306 8.65001 8.99600 9.35605 9.88397 10.50971 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044240 B = 0.004420 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.763690 B = 6333.732600 C = 6659.169979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 C -0.103 4.103 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.106 4.106 7 C -0.140 4.140 8 H 0.101 0.899 9 C 0.119 3.881 10 N -0.612 5.612 11 C 0.542 3.458 12 O -0.545 6.545 13 C 0.403 3.597 14 O -0.591 6.591 15 N -0.503 5.503 16 C -0.305 4.305 17 H 0.112 0.888 18 C 0.030 3.970 19 N -0.870 5.870 20 Si 0.938 3.062 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.404 0.596 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 8.318 -13.939 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 C -0.142 4.142 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.144 4.144 7 C -0.159 4.159 8 H 0.120 0.880 9 C -0.002 4.002 10 N -0.347 5.347 11 C 0.330 3.670 12 O -0.422 6.422 13 C 0.187 3.813 14 O -0.479 6.479 15 N -0.137 5.137 16 C -0.436 4.436 17 H 0.130 0.870 18 C -0.176 4.176 19 N -0.509 5.509 20 Si 0.764 3.236 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.239 0.761 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.227 8.188 -13.566 17.416 hybrid contribution 0.404 -0.280 0.896 1.022 sum -6.823 7.908 -12.670 16.420 Atomic orbital electron populations 1.22557 0.93948 1.02952 1.02857 1.21480 0.93611 0.90615 0.89346 1.21481 1.00607 0.93810 0.98256 1.21688 1.01082 0.98755 0.93928 1.21474 1.01631 0.95158 0.97132 1.21476 1.00314 0.94992 0.97610 1.23311 1.00949 0.97641 0.93971 0.88033 1.22771 1.00432 0.96296 0.80748 1.49220 1.56765 1.10887 1.17799 1.20394 0.77665 0.90563 0.78330 1.90690 1.56179 1.47046 1.48297 1.18856 0.89166 0.87619 0.85675 1.90551 1.61321 1.44838 1.51183 1.41557 1.45943 1.10656 1.15583 1.19912 1.34784 0.85591 1.03269 0.86979 1.25577 0.96343 1.00328 0.95382 1.69493 1.38674 1.32376 1.10339 0.85672 0.78312 0.80868 0.78782 1.18734 1.20309 1.20312 0.91982 0.90751 0.90802 0.91315 0.91184 0.91382 0.91817 0.91992 0.92173 0.90819 0.91458 0.88687 0.88814 0.76068 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 7.39 37.16 0.27 -1.66 16 2 C 0.14 1.94 1.97 -153.02 -0.30 1.64 16 3 C -0.10 -1.36 5.83 -26.86 -0.16 -1.51 16 4 C -0.12 -1.09 5.53 -26.39 -0.15 -1.23 16 5 C -0.12 -0.98 5.78 -26.55 -0.15 -1.13 16 6 C -0.11 -0.95 5.85 -26.82 -0.16 -1.10 16 7 C -0.14 -1.74 3.67 -91.59 -0.34 -2.08 16 8 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 9 C 0.12 1.80 7.36 -24.25 -0.18 1.62 16 10 N -0.61 -11.50 3.40 -233.42 -0.79 -12.29 16 11 C 0.54 12.72 8.13 -11.88 -0.10 12.62 16 12 O -0.55 -13.74 17.27 5.42 0.09 -13.64 16 13 C 0.40 10.57 7.82 -11.88 -0.09 10.48 16 14 O -0.59 -16.15 14.81 5.36 0.08 -16.07 16 15 N -0.50 -13.89 5.25 -11.59 -0.06 -13.95 16 16 C -0.31 -8.57 9.67 -15.14 -0.15 -8.72 16 17 H 0.11 3.21 7.15 -52.49 -0.38 2.84 16 18 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 19 N -0.87 -23.79 13.03 55.53 0.72 -23.07 16 20 Si 0.94 20.36 29.56 -169.99 -5.02 15.34 16 21 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.71 5.28 -51.93 -0.27 0.43 16 26 H 0.07 0.74 4.69 -51.93 -0.24 0.50 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 29 H 0.07 0.57 5.77 -51.93 -0.30 0.27 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.59 5.88 -51.93 -0.31 0.29 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 1.60 7.18 -51.93 -0.37 1.23 16 36 H 0.09 1.21 5.59 -51.93 -0.29 0.92 16 37 H 0.40 11.28 7.35 -40.82 -0.30 10.99 16 38 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 LS Contribution 301.43 15.07 4.54 4.54 Total: -1.00 -31.77 301.43 -7.00 -38.77 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -4.98 Total: 10.74 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -1.59 Total: 9.63 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.13 Total: -49.31 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: 0.17 Total: -29.71 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.77 -7.00 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707208892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.145 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds