Wall clock time and date at job start Mon Mar 30 2020 04:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.51431 * 111.50089 * 2 1 4 4 C 1.54260 * 105.77145 * 304.95646 * 3 2 1 5 5 C 1.52380 * 112.10390 * 303.27216 * 4 3 2 6 6 C 1.53946 * 112.55659 * 53.54815 * 5 4 3 7 7 C 1.51852 * 106.25338 * 303.14498 * 6 5 4 8 8 H 1.09001 * 113.03899 * 299.15858 * 7 6 5 9 9 C 1.50071 * 124.12445 * 153.24240 * 7 6 5 10 10 N 1.43141 * 111.99631 * 147.81083 * 2 1 3 11 11 C 1.34773 * 137.97208 * 252.76149 * 10 2 1 12 12 O 1.21440 * 120.00277 * 0.02562 * 11 10 2 13 13 C 1.48833 * 119.99560 * 179.97438 * 11 10 2 14 14 O 1.21504 * 120.00338 * 359.97438 * 13 11 10 15 15 N 1.34773 * 119.99560 * 179.97438 * 13 11 10 16 16 C 1.36119 * 119.99839 * 179.97438 * 15 13 11 17 17 H 1.08002 * 120.00346 * 359.97438 * 16 15 13 18 18 C 1.39593 * 120.00212 * 180.02562 * 16 15 13 19 19 N 1.31011 * 119.99832 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00148 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46902 * 119.99737 * 20 18 16 23 23 H 1.48496 * 109.47132 * 239.99663 * 20 18 16 24 24 H 1.09000 * 109.47518 * 260.13048 * 1 2 3 25 25 H 1.09004 * 109.47026 * 20.13472 * 1 2 3 26 26 H 1.08998 * 109.47259 * 140.13106 * 1 2 3 27 27 H 1.09000 * 110.18149 * 64.01507 * 3 2 1 28 28 H 1.08997 * 110.18489 * 185.75913 * 3 2 1 29 29 H 1.08995 * 108.95383 * 63.94264 * 4 3 2 30 30 H 1.08991 * 108.95447 * 182.59426 * 4 3 2 31 31 H 1.08999 * 108.86231 * 174.33838 * 5 4 3 32 32 H 1.09000 * 108.86159 * 292.75665 * 5 4 3 33 33 H 1.09001 * 110.08995 * 62.32508 * 6 5 4 34 34 H 1.08994 * 110.09020 * 183.84238 * 6 5 4 35 35 H 1.09000 * 113.79617 * 107.77658 * 9 7 6 36 36 H 1.08997 * 113.96504 * 335.95301 * 9 7 6 37 37 H 0.96999 * 120.00709 * 0.27794 * 15 13 11 38 38 H 0.96996 * 120.00110 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0850 1.4089 0.0000 4 6 1.4473 2.1108 -1.2167 5 6 1.7250 1.3678 -2.5178 6 6 1.3178 -0.1153 -2.4494 7 6 2.0764 -0.7106 -1.2763 8 1 3.1584 -0.6500 -1.3931 9 6 1.6064 -1.8951 -0.4837 10 7 2.0661 -1.1232 0.7070 11 6 2.6890 -1.3649 1.8775 12 8 2.9202 -0.4506 2.6425 13 6 3.0925 -2.7528 2.2329 14 8 2.8600 -3.6678 1.4681 15 7 3.7159 -2.9944 3.4031 16 6 4.0845 -4.2637 3.7284 17 1 3.8771 -5.0773 3.0490 18 6 4.7297 -4.5142 4.9407 19 7 4.9809 -3.5275 5.7651 20 14 5.2349 -6.2562 5.3875 21 1 4.8407 -7.1815 4.2949 22 1 6.7068 -6.3118 5.5756 23 1 4.5593 -6.6599 6.6467 24 1 -0.3634 -0.1761 1.0124 25 1 -0.3633 0.9649 -0.3538 26 1 -0.3633 -0.7887 -0.6587 27 1 1.8058 1.9231 0.9197 28 1 3.1699 1.3858 -0.1027 29 1 0.3695 2.1704 -1.0662 30 1 1.8490 3.1211 -1.2933 31 1 1.1703 1.8487 -3.3235 32 1 2.7904 1.4309 -2.7392 33 1 0.2440 -0.2015 -2.2833 34 1 1.5952 -0.6227 -3.3733 35 1 2.1790 -2.8038 -0.6694 36 1 0.5284 -2.0522 -0.5195 37 1 3.8980 -2.2646 4.0155 38 1 5.4288 -3.7015 6.6077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707208892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:03 Heat of formation + Delta-G solvation = -26.417183 kcal Electronic energy + Delta-G solvation = -20867.001240 eV Core-core repulsion = 17711.037592 eV Total energy + Delta-G solvation = -3155.963647 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.18785 -40.65435 -38.78645 -36.63209 -36.07135 -33.51895 -32.29300 -31.09875 -28.58797 -27.75026 -26.81833 -25.19594 -22.81415 -21.82023 -20.74216 -20.27906 -19.08335 -18.38929 -17.62459 -17.09315 -16.83114 -16.42028 -16.10999 -15.73489 -15.51032 -14.97886 -14.75279 -14.44484 -14.05690 -13.71380 -13.55877 -13.21124 -13.08841 -12.99634 -12.81893 -12.62599 -12.55988 -12.38473 -12.18460 -12.09874 -11.74097 -11.70087 -11.51657 -11.14248 -10.42405 -10.30784 -10.14815 -9.68722 -8.68399 -6.14049 0.56551 1.36740 1.43577 1.49446 1.60624 2.23598 2.33562 2.82308 3.11202 3.14822 3.72365 3.78799 3.90496 3.94628 4.12234 4.15857 4.24601 4.38107 4.49667 4.56915 4.66833 4.72522 4.81826 4.91562 4.98864 5.02017 5.09401 5.21196 5.22106 5.31529 5.33019 5.36327 5.42019 5.65343 5.66505 6.24882 6.48342 6.74428 6.96721 7.26028 7.76755 8.48115 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044240 B = 0.004420 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.763690 B = 6333.732600 C = 6659.169979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 C -0.107 4.107 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.098 4.098 7 C -0.117 4.117 8 H 0.083 0.917 9 C 0.112 3.888 10 N -0.617 5.617 11 C 0.537 3.463 12 O -0.577 6.577 13 C 0.396 3.604 14 O -0.608 6.608 15 N -0.515 5.515 16 C -0.345 4.345 17 H 0.099 0.901 18 C -0.006 4.006 19 N -0.899 5.899 20 Si 1.013 2.987 21 H -0.263 1.263 22 H -0.265 1.265 23 H -0.265 1.265 24 H 0.040 0.960 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.398 0.602 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.858 8.645 -16.017 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 C -0.145 4.145 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.135 4.135 7 C -0.136 4.136 8 H 0.102 0.898 9 C -0.008 4.008 10 N -0.350 5.350 11 C 0.324 3.676 12 O -0.457 6.457 13 C 0.181 3.819 14 O -0.497 6.497 15 N -0.149 5.149 16 C -0.475 4.475 17 H 0.117 0.883 18 C -0.210 4.210 19 N -0.537 5.537 20 Si 0.834 3.166 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.189 1.189 24 H 0.059 0.941 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.233 0.767 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.679 8.535 -15.701 19.867 hybrid contribution 0.824 -0.311 1.457 1.703 sum -7.856 8.225 -14.244 18.227 Atomic orbital electron populations 1.22578 0.91112 1.05620 1.02355 1.22071 0.95644 0.90495 0.88741 1.21557 0.99667 0.93541 0.99774 1.21678 1.01720 0.98888 0.92325 1.21501 1.01871 0.94658 0.97261 1.21536 1.00815 0.95032 0.96149 1.23138 1.00525 0.95095 0.94876 0.89828 1.23126 1.01887 0.96214 0.79544 1.49547 1.54684 1.14426 1.16384 1.19817 0.79054 0.88886 0.79883 1.90653 1.58155 1.47099 1.49840 1.19499 0.88297 0.89066 0.85070 1.90506 1.61769 1.45923 1.51476 1.41668 1.46637 1.10496 1.16067 1.20025 1.37372 0.85592 1.04495 0.88315 1.26595 0.95133 1.04930 0.94340 1.69565 1.38631 1.34615 1.10855 0.84603 0.78414 0.75004 0.78626 1.18671 1.18980 1.18935 0.94068 0.87699 0.88510 0.93059 0.93386 0.89550 0.90634 0.88990 0.92798 0.88744 0.89622 0.90983 0.85721 0.76725 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 7.39 71.98 0.53 -2.74 16 2 C 0.11 3.17 1.97 -8.36 -0.02 3.15 16 3 C -0.11 -2.74 5.83 30.51 0.18 -2.56 16 4 C -0.11 -1.65 5.53 30.82 0.17 -1.48 16 5 C -0.12 -1.45 5.78 30.71 0.18 -1.27 16 6 C -0.10 -1.32 5.85 30.54 0.18 -1.14 16 7 C -0.12 -2.73 3.67 -10.90 -0.04 -2.77 16 8 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 9 C 0.11 3.31 7.36 71.82 0.53 3.83 16 10 N -0.62 -23.68 3.40 ******* -3.44 -27.12 16 11 C 0.54 26.44 8.13 87.08 0.71 27.15 16 12 O -0.58 -30.71 17.27 -3.53 -0.06 -30.77 16 13 C 0.40 21.88 7.82 87.08 0.68 22.56 16 14 O -0.61 -34.64 14.81 -3.73 -0.06 -34.69 16 15 N -0.51 -29.99 5.25 -308.86 -1.62 -31.61 16 16 C -0.35 -20.20 9.67 84.36 0.82 -19.38 16 17 H 0.10 5.91 7.15 -2.91 -0.02 5.89 16 18 C -0.01 -0.33 5.51 85.14 0.47 0.14 16 19 N -0.90 -50.02 13.03 21.77 0.28 -49.73 16 20 Si 1.01 41.84 29.56 68.60 2.03 43.87 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.10 1.53 5.28 -2.38 -0.01 1.51 16 26 H 0.10 1.52 4.69 -2.39 -0.01 1.51 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.41 8.12 -2.39 -0.02 1.39 16 29 H 0.09 1.03 5.77 -2.39 -0.01 1.02 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.96 5.88 -2.39 -0.01 0.95 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 2.47 7.18 -2.39 -0.02 2.45 16 36 H 0.13 2.91 5.59 -2.39 -0.01 2.89 16 37 H 0.40 23.62 7.35 -92.71 -0.68 22.94 16 38 H 0.29 14.62 8.30 -92.71 -0.77 13.85 16 Total: -1.00 -73.34 301.43 1.93 -71.41 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.41 Total: 33.16 kcal Atomic # 6 Polarization: 21.10 SS G_CDS: 4.38 Total: 25.48 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -4.77 Total: -108.46 kcal Atomic # 8 Polarization: -65.34 SS G_CDS: -0.12 Total: -65.46 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -73.34 1.93 -71.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707208892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.993 kcal (2) G-P(sol) polarization free energy of solvation -73.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds