Wall clock time and date at job start Mon Mar 30 2020 04:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31016 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47459 * 300.00295 * 3 2 1 6 6 H 1.48500 * 109.46922 * 60.00322 * 3 2 1 7 7 C 1.39585 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00393 * 179.97438 * 7 2 1 9 9 N 1.36120 * 119.99699 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99686 * 180.02562 * 9 7 2 11 11 O 1.21506 * 120.00159 * 0.02562 * 10 9 7 12 12 C 1.48832 * 120.00100 * 180.02562 * 10 9 7 13 13 O 1.21447 * 119.99791 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00516 * 180.02562 * 12 10 9 15 15 C 1.49553 * 134.23807 * 0.04294 * 14 12 10 16 16 C 1.53811 * 85.90908 * 155.98895 * 15 14 12 17 17 H 1.09005 * 114.44524 * 138.19689 * 16 15 14 18 18 C 1.51496 * 113.53345 * 270.72386 * 16 15 14 19 19 C 1.50911 * 112.65420 * 180.94259 * 18 16 15 20 20 C 1.50086 * 114.93425 * 273.86526 * 19 18 16 21 21 C 1.55381 * 107.16988 * 62.91124 * 20 19 18 22 22 C 1.51576 * 106.97720 * 283.86688 * 21 20 19 23 23 C 1.47421 * 134.20516 * 179.97438 * 14 12 10 24 24 H 1.09005 * 113.95770 * 89.24971 * 23 14 12 25 25 H 0.96992 * 120.00163 * 359.97438 * 1 2 3 26 26 H 0.96990 * 120.00302 * 0.02562 * 9 7 2 27 27 H 1.09001 * 114.31068 * 41.81321 * 15 14 12 28 28 H 1.09001 * 113.66182 * 270.09017 * 15 14 12 29 29 H 1.08996 * 108.84466 * 60.12035 * 18 16 15 30 30 H 1.09001 * 108.84592 * 301.76057 * 18 16 15 31 31 H 1.09002 * 108.39270 * 152.45219 * 19 18 16 32 32 H 1.08997 * 108.25868 * 35.17701 * 19 18 16 33 33 H 1.09002 * 109.93018 * 182.35358 * 20 19 18 34 34 H 1.08996 * 109.92576 * 303.47415 * 20 19 18 35 35 H 1.09001 * 110.04996 * 42.86794 * 21 20 19 36 36 H 1.09002 * 110.04667 * 164.39185 * 21 20 19 37 37 H 1.09004 * 107.95809 * 342.22294 * 22 21 20 38 38 H 1.08999 * 109.40261 * 223.36467 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3464 -0.0006 5 1 1.8854 2.3965 -1.2124 6 1 1.8854 2.3964 1.2125 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3876 -0.0005 10 6 2.0015 -3.5548 -0.0005 11 8 3.2165 -3.5548 -0.0001 12 6 1.2574 -4.8438 -0.0011 13 8 0.0429 -4.8438 -0.0011 14 7 1.9312 -6.0110 -0.0006 15 6 3.3808 -6.3788 0.0013 16 6 2.9288 -7.7105 0.6245 17 1 3.4342 -8.5899 0.2252 18 6 2.8716 -7.6814 2.1381 19 6 2.4481 -9.0038 2.7292 20 6 0.9643 -9.2029 2.8361 21 6 0.3941 -9.1874 1.3908 22 6 0.3711 -7.7406 0.9395 23 6 1.5299 -7.4295 -0.0004 24 1 1.3972 -7.8521 -0.9964 25 1 -0.4850 0.8400 0.0004 26 1 0.3576 -2.3877 -0.0005 27 1 3.9969 -5.7718 0.6647 28 1 3.8066 -6.4846 -0.9965 29 1 2.1631 -6.9137 2.4489 30 1 3.8583 -7.4236 2.5228 31 1 2.8791 -9.0884 3.7268 32 1 2.8583 -9.8016 2.1102 33 1 0.7512 -10.1613 3.3094 34 1 0.5221 -8.3947 3.4186 35 1 1.0379 -9.7667 0.7289 36 1 -0.6163 -9.5964 1.3833 37 1 0.4474 -7.1108 1.8259 38 1 -0.5708 -7.5348 0.4311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707348499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:45 Heat of formation + Delta-G solvation = -49.597612 kcal Electronic energy + Delta-G solvation = -20756.500574 eV Core-core repulsion = 17599.531749 eV Total energy + Delta-G solvation = -3156.968826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67940 -38.58873 -36.84881 -35.78166 -34.14026 -32.13128 -31.39609 -29.79408 -27.10528 -25.93153 -24.75919 -22.47808 -22.03693 -20.75498 -19.52681 -18.35777 -17.72407 -16.72214 -16.10775 -15.83872 -15.42492 -14.88415 -14.47786 -14.01476 -13.97603 -13.61875 -13.08713 -12.86499 -12.78405 -12.57709 -12.48338 -12.36998 -11.75229 -11.60785 -11.25124 -11.18920 -10.95309 -10.70825 -10.58253 -10.45970 -10.38326 -10.35792 -10.09691 -9.90066 -9.69945 -8.31821 -8.18086 -8.12625 -6.63541 -3.96186 2.51213 3.05240 3.15635 3.19113 3.27021 4.04286 4.29224 4.32954 4.55150 4.69874 4.82585 4.98618 5.07820 5.15804 5.20501 5.28476 5.35423 5.37474 5.59059 5.61244 5.75614 5.83775 5.93761 5.99775 6.02863 6.04933 6.11091 6.15894 6.19317 6.30179 6.32341 6.42297 6.61601 7.34139 7.79373 8.05840 8.33353 8.65345 9.00387 9.36714 9.89472 10.51710 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036615 B = 0.004476 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.531351 B = 6254.484540 C = 6520.988472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.305 4.305 8 H 0.112 0.888 9 N -0.504 5.504 10 C 0.401 3.599 11 O -0.593 6.593 12 C 0.533 3.467 13 O -0.547 6.547 14 N -0.623 5.623 15 C 0.125 3.875 16 C -0.120 4.120 17 H 0.091 0.909 18 C -0.104 4.104 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.125 4.125 23 C 0.140 3.860 24 H 0.087 0.913 25 H 0.279 0.721 26 H 0.404 0.596 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.356 -16.702 3.032 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.176 4.176 3 Si 0.763 3.237 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.130 0.870 9 N -0.138 5.138 10 C 0.185 3.815 11 O -0.481 6.481 12 C 0.320 3.680 13 O -0.424 6.424 14 N -0.360 5.360 15 C 0.003 3.997 16 C -0.139 4.139 17 H 0.109 0.891 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.152 4.152 22 C -0.163 4.163 23 C 0.037 3.963 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.239 0.761 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.230 -16.328 3.037 16.919 hybrid contribution -0.284 0.926 -0.171 0.983 sum 2.945 -15.402 2.866 15.941 Atomic orbital electron populations 1.69492 1.06506 1.29140 1.45803 1.25568 0.95609 1.00394 0.96057 0.85682 0.79848 0.80125 0.78034 1.18758 1.20328 1.20320 1.19901 0.93918 0.81877 1.47872 0.87027 1.41566 1.10438 1.04172 1.57648 1.18959 0.87830 0.84056 0.90650 1.90552 1.12878 1.86602 1.58038 1.20467 0.86922 0.84571 0.76000 1.90684 1.13904 1.87403 1.50441 1.50172 1.08961 1.03838 1.73041 1.23402 0.83262 0.92134 1.00909 1.23183 0.96130 0.98291 0.96338 0.89067 1.20680 1.02095 0.98065 0.93283 1.20595 0.96257 0.97678 1.00660 1.21653 0.95939 1.01464 0.96666 1.21755 1.00840 0.96228 0.96355 1.21470 0.98191 0.96753 0.99855 1.23072 0.94731 0.80187 0.98294 0.89532 0.91049 0.76084 0.88675 0.89978 0.91236 0.91579 0.92619 0.92318 0.91981 0.91693 0.91491 0.91923 0.90923 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.80 13.03 55.53 0.72 -23.08 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 3 Si 0.94 20.37 29.56 -169.99 -5.02 15.35 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.31 -8.56 9.67 -15.15 -0.15 -8.71 16 8 H 0.11 3.19 7.15 -52.49 -0.38 2.82 16 9 N -0.50 -13.86 5.25 -11.59 -0.06 -13.92 16 10 C 0.40 10.43 7.82 -11.87 -0.09 10.34 16 11 O -0.59 -16.03 14.65 5.36 0.08 -15.96 16 12 C 0.53 12.24 7.99 -11.88 -0.09 12.15 16 13 O -0.55 -13.47 16.65 5.41 0.09 -13.38 16 14 N -0.62 -11.36 3.29 -166.72 -0.55 -11.91 16 15 C 0.13 1.86 7.34 -1.92 -0.01 1.85 16 16 C -0.12 -1.38 3.77 -89.51 -0.34 -1.72 16 17 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 18 C -0.10 -1.18 4.66 -28.54 -0.13 -1.31 16 19 C -0.11 -1.05 5.14 -29.23 -0.15 -1.20 16 20 C -0.12 -1.12 5.83 -26.92 -0.16 -1.28 16 21 C -0.11 -1.13 5.78 -26.19 -0.15 -1.28 16 22 C -0.12 -1.68 4.52 -27.75 -0.13 -1.80 16 23 C 0.14 1.94 4.20 -66.25 -0.28 1.66 16 24 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 26 H 0.40 11.25 7.35 -40.82 -0.30 10.95 16 27 H 0.09 1.56 7.43 -51.93 -0.39 1.17 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.98 6.11 -51.93 -0.32 0.66 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.48 7.71 -51.93 -0.40 0.08 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.68 7.54 -51.93 -0.39 0.29 16 35 H 0.07 0.59 7.40 -51.93 -0.38 0.21 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.12 5.53 -51.93 -0.29 0.83 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -31.30 305.54 -7.27 -38.56 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.35 Total: 10.31 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -1.78 Total: 9.40 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.11 Total: -48.90 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: 0.17 Total: -29.33 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.30 -7.27 -38.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707348499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.033 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds