Wall clock time and date at job start Mon Mar 30 2020 04:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31016 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47110 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47459 * 300.00295 * 3 2 1 6 6 H 1.48500 * 109.46922 * 60.00322 * 3 2 1 7 7 C 1.39585 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00393 * 179.97438 * 7 2 1 9 9 N 1.36120 * 119.99699 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99686 * 180.02562 * 9 7 2 11 11 O 1.21506 * 120.00159 * 0.02562 * 10 9 7 12 12 C 1.48832 * 120.00100 * 180.02562 * 10 9 7 13 13 O 1.21447 * 119.99791 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00516 * 180.02562 * 12 10 9 15 15 C 1.49553 * 134.23807 * 0.04294 * 14 12 10 16 16 C 1.53811 * 85.90908 * 155.98895 * 15 14 12 17 17 H 1.09005 * 114.44524 * 138.19689 * 16 15 14 18 18 C 1.51496 * 113.53345 * 270.72386 * 16 15 14 19 19 C 1.50911 * 112.65420 * 180.94259 * 18 16 15 20 20 C 1.50086 * 114.93425 * 273.86526 * 19 18 16 21 21 C 1.55381 * 107.16988 * 62.91124 * 20 19 18 22 22 C 1.51576 * 106.97720 * 283.86688 * 21 20 19 23 23 C 1.47421 * 134.20516 * 179.97438 * 14 12 10 24 24 H 1.09005 * 113.95770 * 89.24971 * 23 14 12 25 25 H 0.96992 * 120.00163 * 359.97438 * 1 2 3 26 26 H 0.96990 * 120.00302 * 0.02562 * 9 7 2 27 27 H 1.09001 * 114.31068 * 41.81321 * 15 14 12 28 28 H 1.09001 * 113.66182 * 270.09017 * 15 14 12 29 29 H 1.08996 * 108.84466 * 60.12035 * 18 16 15 30 30 H 1.09001 * 108.84592 * 301.76057 * 18 16 15 31 31 H 1.09002 * 108.39270 * 152.45219 * 19 18 16 32 32 H 1.08997 * 108.25868 * 35.17701 * 19 18 16 33 33 H 1.09002 * 109.93018 * 182.35358 * 20 19 18 34 34 H 1.08996 * 109.92576 * 303.47415 * 20 19 18 35 35 H 1.09001 * 110.04996 * 42.86794 * 21 20 19 36 36 H 1.09002 * 110.04667 * 164.39185 * 21 20 19 37 37 H 1.09004 * 107.95809 * 342.22294 * 22 21 20 38 38 H 1.08999 * 109.40261 * 223.36467 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7041 1.3464 -0.0006 5 1 1.8854 2.3965 -1.2124 6 1 1.8854 2.3964 1.2125 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3876 -0.0005 10 6 2.0015 -3.5548 -0.0005 11 8 3.2165 -3.5548 -0.0001 12 6 1.2574 -4.8438 -0.0011 13 8 0.0429 -4.8438 -0.0011 14 7 1.9312 -6.0110 -0.0006 15 6 3.3808 -6.3788 0.0013 16 6 2.9288 -7.7105 0.6245 17 1 3.4342 -8.5899 0.2252 18 6 2.8716 -7.6814 2.1381 19 6 2.4481 -9.0038 2.7292 20 6 0.9643 -9.2029 2.8361 21 6 0.3941 -9.1874 1.3908 22 6 0.3711 -7.7406 0.9395 23 6 1.5299 -7.4295 -0.0004 24 1 1.3972 -7.8521 -0.9964 25 1 -0.4850 0.8400 0.0004 26 1 0.3576 -2.3877 -0.0005 27 1 3.9969 -5.7718 0.6647 28 1 3.8066 -6.4846 -0.9965 29 1 2.1631 -6.9137 2.4489 30 1 3.8583 -7.4236 2.5228 31 1 2.8791 -9.0884 3.7268 32 1 2.8583 -9.8016 2.1102 33 1 0.7512 -10.1613 3.3094 34 1 0.5221 -8.3947 3.4186 35 1 1.0379 -9.7667 0.7289 36 1 -0.6163 -9.5964 1.3833 37 1 0.4474 -7.1108 1.8259 38 1 -0.5708 -7.5348 0.4311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707348499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:45 Heat of formation + Delta-G solvation = -70.946957 kcal Electronic energy + Delta-G solvation = -20757.426352 eV Core-core repulsion = 17599.531749 eV Total energy + Delta-G solvation = -3157.894603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.99154 -40.37079 -38.69934 -36.93008 -36.16733 -33.50823 -33.08120 -31.12557 -28.26855 -27.80066 -26.09941 -23.98701 -23.25425 -21.56361 -21.08527 -20.36114 -19.12055 -18.43288 -17.80925 -17.02864 -16.87620 -16.50791 -15.90075 -15.84526 -15.48440 -15.06912 -14.47702 -14.24081 -13.98267 -13.76693 -13.73016 -13.64591 -13.47350 -12.99345 -12.65408 -12.58737 -12.44707 -12.15700 -12.08390 -11.83786 -11.68943 -11.54579 -11.33957 -11.14762 -10.96083 -10.29201 -10.09522 -9.75416 -8.67185 -6.12810 0.61850 1.37751 1.43999 1.52200 1.63090 2.24302 2.37217 2.93788 3.13550 3.29691 3.67412 3.81882 3.96031 4.02928 4.14616 4.20571 4.31198 4.39305 4.48143 4.52337 4.70466 4.77924 4.89937 4.90845 5.00153 5.14200 5.18687 5.22961 5.23867 5.33357 5.37798 5.40211 5.55803 5.61221 5.67549 6.25915 6.48018 6.74789 6.98112 7.28065 7.78942 8.49346 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036615 B = 0.004476 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.531351 B = 6254.484540 C = 6520.988472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.007 4.007 3 Si 1.012 2.988 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.345 4.345 8 H 0.098 0.902 9 N -0.517 5.517 10 C 0.394 3.606 11 O -0.608 6.608 12 C 0.528 3.472 13 O -0.576 6.576 14 N -0.623 5.623 15 C 0.113 3.887 16 C -0.090 4.090 17 H 0.142 0.858 18 C -0.106 4.106 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.105 4.105 22 C -0.120 4.120 23 C 0.132 3.868 24 H 0.111 0.889 25 H 0.288 0.712 26 H 0.398 0.602 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 -18.809 2.903 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.475 4.475 8 H 0.116 0.884 9 N -0.151 5.151 10 C 0.179 3.821 11 O -0.497 6.497 12 C 0.315 3.685 13 O -0.457 6.457 14 N -0.358 5.358 15 C -0.008 4.008 16 C -0.108 4.108 17 H 0.159 0.841 18 C -0.143 4.143 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.143 4.143 22 C -0.159 4.159 23 C 0.031 3.969 24 H 0.129 0.871 25 H 0.098 0.902 26 H 0.232 0.768 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.543 -18.491 2.912 19.262 hybrid contribution -0.665 1.485 -0.115 1.631 sum 3.878 -17.006 2.797 17.665 Atomic orbital electron populations 1.69566 1.07923 1.30694 1.45611 1.26571 0.96504 1.03525 0.94425 0.84620 0.78234 0.75134 0.78764 1.18699 1.18991 1.19017 1.20001 0.93596 0.83044 1.50821 0.88397 1.41679 1.10100 1.04844 1.58497 1.19662 0.87980 0.85088 0.89361 1.90508 1.13581 1.87270 1.58369 1.19909 0.86510 0.85095 0.77029 1.90654 1.14670 1.87899 1.52434 1.50512 1.11060 1.04240 1.70032 1.23756 0.81200 0.93686 1.02196 1.23131 0.93803 0.97881 0.96027 0.84068 1.20732 1.01514 0.98609 0.93449 1.20555 0.96070 0.96668 1.01502 1.21655 0.96049 1.01852 0.96126 1.21750 1.02117 0.93464 0.96989 1.21448 0.96971 0.99067 0.98368 1.23572 0.96444 0.76952 0.99964 0.87122 0.90159 0.76762 0.90664 0.87898 0.95011 0.90935 0.91808 0.89703 0.89710 0.93857 0.89056 0.91145 0.93722 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.11 13.03 21.76 0.28 -49.83 16 2 C -0.01 -0.36 5.51 85.14 0.47 0.11 16 3 Si 1.01 41.90 29.56 68.60 2.03 43.93 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 6 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.35 -20.14 9.67 84.35 0.82 -19.32 16 8 H 0.10 5.85 7.15 -2.91 -0.02 5.83 16 9 N -0.52 -29.94 5.25 -308.86 -1.62 -31.57 16 10 C 0.39 21.49 7.82 87.08 0.68 22.17 16 11 O -0.61 -34.17 14.65 -3.74 -0.05 -34.22 16 12 C 0.53 25.31 7.99 87.08 0.70 26.01 16 13 O -0.58 -29.80 16.65 -3.55 -0.06 -29.85 16 14 N -0.62 -22.82 3.29 -799.70 -2.63 -25.45 16 15 C 0.11 3.21 7.34 86.06 0.63 3.84 16 16 C -0.09 -1.77 3.77 -10.05 -0.04 -1.81 16 17 H 0.14 1.59 8.05 -2.38 -0.02 1.57 16 18 C -0.11 -2.19 4.66 29.42 0.14 -2.06 16 19 C -0.11 -1.65 5.14 28.98 0.15 -1.50 16 20 C -0.12 -1.93 5.83 30.47 0.18 -1.75 16 21 C -0.11 -1.79 5.78 30.95 0.18 -1.61 16 22 C -0.12 -3.18 4.52 29.93 0.14 -3.04 16 23 C 0.13 3.41 4.20 45.58 0.19 3.60 16 24 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 25 H 0.29 14.62 8.30 -92.71 -0.77 13.85 16 26 H 0.40 23.50 7.35 -92.72 -0.68 22.82 16 27 H 0.07 2.47 7.43 -2.39 -0.02 2.45 16 28 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.03 0.90 6.11 -2.39 -0.01 0.89 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.89 7.71 -2.39 -0.02 0.87 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.04 0.89 7.54 -2.39 -0.02 0.87 16 35 H 0.09 1.15 7.40 -2.39 -0.02 1.13 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.04 1.43 5.53 -2.38 -0.01 1.42 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.08 305.54 2.57 -69.51 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.39 Total: 32.85 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 4.22 Total: 24.64 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.97 Total: -106.84 kcal Atomic # 8 Polarization: -63.97 SS G_CDS: -0.11 Total: -64.08 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -72.08 2.57 -69.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707348499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.435 kcal (2) G-P(sol) polarization free energy of solvation -72.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds