Wall clock time and date at job start Mon Mar 30 2020 04:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 120.00134 * 3 2 1 6 6 H 1.48506 * 109.46902 * 240.00385 * 3 2 1 7 7 C 1.39585 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00387 * 179.97438 * 7 2 1 9 9 N 1.36121 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00174 * 180.02562 * 9 7 2 11 11 O 1.21499 * 120.00162 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00052 * 180.02562 * 10 9 7 13 13 O 1.21444 * 120.00441 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00052 * 179.97438 * 12 10 9 15 15 C 1.47714 * 136.59015 * 359.97438 * 14 12 10 16 16 C 1.52691 * 87.12387 * 149.67203 * 15 14 12 17 17 H 1.09001 * 114.17514 * 275.64886 * 16 15 14 18 18 C 1.52190 * 116.21218 * 140.90067 * 16 15 14 19 19 C 1.53674 * 108.84378 * 208.41069 * 18 16 15 20 20 C 1.52903 * 109.35897 * 59.94321 * 19 18 16 21 21 C 1.53284 * 110.71577 * 259.38294 * 20 19 18 22 22 C 1.52947 * 109.42236 * 82.66794 * 21 20 19 23 23 C 1.46113 * 136.59124 * 179.63231 * 14 12 10 24 24 H 1.09000 * 113.03206 * 96.19444 * 23 14 12 25 25 H 0.97001 * 119.99874 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99985 * 0.02562 * 9 7 2 27 27 H 1.09001 * 113.61311 * 264.23073 * 15 14 12 28 28 H 1.08994 * 113.61090 * 35.11364 * 15 14 12 29 29 H 1.09004 * 109.57191 * 328.21709 * 18 16 15 30 30 H 1.08995 * 109.57455 * 88.59607 * 18 16 15 31 31 H 1.09000 * 109.49290 * 179.91140 * 19 18 16 32 32 H 1.08997 * 109.49168 * 299.95576 * 19 18 16 33 33 H 1.08994 * 109.22182 * 19.70257 * 20 19 18 34 34 H 1.08997 * 109.22266 * 139.10672 * 20 19 18 35 35 H 1.09002 * 109.47142 * 202.64940 * 21 20 19 36 36 H 1.08999 * 109.48203 * 322.67676 * 21 20 19 37 37 H 1.09006 * 109.57460 * 119.65016 * 22 21 20 38 38 H 1.09004 * 109.56938 * 240.02156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 1.2792 2.7465 -0.0006 5 1 3.0979 1.6965 1.2124 6 1 3.0978 1.6965 -1.2126 7 6 2.0082 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3276 -2.3877 -0.0005 10 6 2.0015 -3.5549 -0.0005 11 8 3.2165 -3.5549 -0.0010 12 6 1.2574 -4.8437 -0.0011 13 8 0.0429 -4.8439 -0.0011 14 7 1.9313 -6.0109 -0.0016 15 6 3.3469 -6.4327 -0.0023 16 6 2.8980 -7.6725 0.7677 17 1 2.8172 -7.5242 1.8445 18 6 3.5770 -8.9810 0.3897 19 6 2.6083 -10.1412 0.6674 20 6 1.3404 -9.9535 -0.1663 21 6 0.2095 -9.3725 0.6899 22 6 0.3672 -7.8537 0.7781 23 6 1.5925 -7.4322 0.0042 24 1 1.5933 -7.8749 -0.9919 25 1 -0.4850 0.8401 0.0004 26 1 0.3576 -2.3877 -0.0005 27 1 3.7363 -6.6533 -0.9962 28 1 3.9988 -5.7745 0.5721 29 1 3.8349 -8.9660 -0.6693 30 1 4.4806 -9.1089 0.9856 31 1 3.0840 -11.0844 0.3986 32 1 2.3493 -10.1533 1.7261 33 1 1.5512 -9.2738 -0.9919 34 1 1.0278 -10.9180 -0.5663 35 1 -0.7512 -9.6124 0.2343 36 1 0.2545 -9.8013 1.6910 37 1 -0.5155 -7.3701 0.3594 38 1 0.4873 -7.5590 1.8206 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707348502.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:51 Heat of formation + Delta-G solvation = -31.999477 kcal Electronic energy + Delta-G solvation = -20612.811840 eV Core-core repulsion = 17456.606126 eV Total energy + Delta-G solvation = -3156.205714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12079 -38.68926 -36.87728 -35.73933 -34.14537 -32.64753 -31.40407 -29.58049 -26.82070 -25.95524 -24.93011 -22.83926 -22.04412 -20.60998 -19.89486 -18.44050 -17.84502 -16.53961 -16.28523 -15.31483 -15.14446 -14.89179 -14.70342 -14.45906 -13.92825 -13.81498 -13.24471 -12.93858 -12.89760 -12.75295 -12.39968 -12.08698 -11.86398 -11.73643 -11.20974 -11.16422 -11.05946 -10.67847 -10.57392 -10.51984 -10.44854 -10.37897 -10.14898 -9.80155 -9.68351 -8.29876 -8.19038 -8.15980 -6.64260 -3.96967 2.48701 3.06081 3.17515 3.18625 3.24147 4.04499 4.25137 4.28332 4.57336 4.70326 4.84499 4.91557 5.06386 5.09541 5.17696 5.22141 5.23566 5.31895 5.49663 5.59787 5.66208 5.78894 5.83476 5.91210 5.99444 6.03660 6.06473 6.11412 6.14035 6.22350 6.33686 6.41752 6.49798 7.33098 7.77817 8.09564 8.31775 8.63430 8.99012 9.35253 9.88301 10.50763 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044984 B = 0.004234 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.292612 B = 6611.375179 C = 7120.184035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.031 3.969 3 Si 0.940 3.060 4 H -0.281 1.281 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.111 0.889 9 N -0.502 5.502 10 C 0.401 3.599 11 O -0.592 6.592 12 C 0.542 3.458 13 O -0.545 6.545 14 N -0.625 5.625 15 C 0.118 3.882 16 C -0.127 4.127 17 H 0.102 0.898 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.139 4.139 21 C -0.111 4.111 22 C -0.127 4.127 23 C 0.130 3.870 24 H 0.095 0.905 25 H 0.281 0.719 26 H 0.404 0.596 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -17.523 0.835 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.129 0.871 9 N -0.136 5.136 10 C 0.185 3.815 11 O -0.480 6.480 12 C 0.330 3.670 13 O -0.422 6.422 14 N -0.361 5.361 15 C -0.005 4.005 16 C -0.146 4.146 17 H 0.120 0.880 18 C -0.145 4.145 19 C -0.154 4.154 20 C -0.177 4.177 21 C -0.149 4.149 22 C -0.165 4.165 23 C 0.027 3.973 24 H 0.112 0.888 25 H 0.091 0.909 26 H 0.240 0.760 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.437 -17.113 0.825 17.474 hybrid contribution -0.305 0.867 -0.056 0.921 sum 3.132 -16.245 0.769 16.562 Atomic orbital electron populations 1.69481 1.06506 1.29387 1.45512 1.25573 0.95618 1.00405 0.95977 0.85783 0.78862 0.79381 0.79475 1.20602 1.19399 1.19409 1.19812 0.93895 0.81873 1.48098 0.87093 1.41546 1.10441 1.04114 1.57538 1.18888 0.87802 0.83956 0.90859 1.90551 1.12860 1.86522 1.58105 1.20346 0.86745 0.83983 0.75929 1.90683 1.13861 1.87203 1.50502 1.49300 1.09740 1.04023 1.73019 1.22906 0.84425 0.93146 0.99992 1.22962 0.96367 0.94793 1.00506 0.88030 1.21473 0.98114 0.93238 1.01682 1.21717 0.95521 0.97756 1.00366 1.22007 0.95181 1.00995 0.99476 1.21619 0.98406 0.94770 1.00113 1.21342 0.98585 0.95721 1.00854 1.22413 0.95210 0.80219 0.99485 0.88798 0.90912 0.76048 0.90085 0.88892 0.91447 0.91290 0.92061 0.91712 0.90324 0.92395 0.91974 0.91818 0.90566 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.73 13.03 55.53 0.72 -23.01 16 2 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 3 Si 0.94 20.35 29.56 -169.99 -5.02 15.32 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.31 -8.59 9.67 -15.15 -0.15 -8.74 16 8 H 0.11 3.16 7.15 -52.49 -0.38 2.78 16 9 N -0.50 -13.81 5.25 -11.59 -0.06 -13.87 16 10 C 0.40 10.48 7.82 -11.88 -0.09 10.39 16 11 O -0.59 -16.14 14.76 5.37 0.08 -16.06 16 12 C 0.54 12.57 8.07 -11.88 -0.10 12.47 16 13 O -0.55 -13.49 16.54 5.41 0.09 -13.40 16 14 N -0.62 -11.61 3.62 -192.56 -0.70 -12.30 16 15 C 0.12 1.78 7.30 -12.25 -0.09 1.69 16 16 C -0.13 -1.50 3.60 -91.14 -0.33 -1.83 16 17 H 0.10 1.24 8.04 -51.93 -0.42 0.82 16 18 C -0.11 -0.92 5.57 -26.79 -0.15 -1.07 16 19 C -0.12 -0.92 5.83 -26.43 -0.15 -1.07 16 20 C -0.14 -1.21 5.44 -26.63 -0.14 -1.35 16 21 C -0.11 -1.10 6.10 -26.61 -0.16 -1.26 16 22 C -0.13 -1.70 5.68 -27.80 -0.16 -1.86 16 23 C 0.13 1.81 2.79 -77.83 -0.22 1.59 16 24 H 0.09 1.20 5.53 -51.93 -0.29 0.92 16 25 H 0.28 7.09 8.30 -40.82 -0.34 6.76 16 26 H 0.40 11.23 7.35 -40.82 -0.30 10.93 16 27 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 28 H 0.09 1.55 7.31 -51.93 -0.38 1.17 16 29 H 0.07 0.55 7.98 -51.93 -0.41 0.13 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.52 7.43 -51.93 -0.39 0.13 16 33 H 0.08 0.74 4.62 -51.93 -0.24 0.50 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.58 7.60 -51.93 -0.39 0.18 16 37 H 0.08 1.21 7.74 -51.93 -0.40 0.80 16 38 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -31.28 305.07 -7.38 -38.66 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -5.25 Total: 10.39 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -1.83 Total: 9.68 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.03 Total: -49.19 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: 0.17 Total: -29.46 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.28 -7.38 -38.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707348502.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.662 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds