Wall clock time and date at job start Mon Mar 30 2020 04:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 120.00134 * 3 2 1 6 6 H 1.48506 * 109.46902 * 240.00385 * 3 2 1 7 7 C 1.39585 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00387 * 179.97438 * 7 2 1 9 9 N 1.36121 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00174 * 180.02562 * 9 7 2 11 11 O 1.21499 * 120.00162 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00052 * 180.02562 * 10 9 7 13 13 O 1.21444 * 120.00441 * 359.97438 * 12 10 9 14 14 N 1.34774 * 120.00052 * 179.97438 * 12 10 9 15 15 C 1.47714 * 136.59015 * 359.97438 * 14 12 10 16 16 C 1.52691 * 87.12387 * 149.67203 * 15 14 12 17 17 H 1.09001 * 114.17514 * 275.64886 * 16 15 14 18 18 C 1.52190 * 116.21218 * 140.90067 * 16 15 14 19 19 C 1.53674 * 108.84378 * 208.41069 * 18 16 15 20 20 C 1.52903 * 109.35897 * 59.94321 * 19 18 16 21 21 C 1.53284 * 110.71577 * 259.38294 * 20 19 18 22 22 C 1.52947 * 109.42236 * 82.66794 * 21 20 19 23 23 C 1.46113 * 136.59124 * 179.63231 * 14 12 10 24 24 H 1.09000 * 113.03206 * 96.19444 * 23 14 12 25 25 H 0.97001 * 119.99874 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99985 * 0.02562 * 9 7 2 27 27 H 1.09001 * 113.61311 * 264.23073 * 15 14 12 28 28 H 1.08994 * 113.61090 * 35.11364 * 15 14 12 29 29 H 1.09004 * 109.57191 * 328.21709 * 18 16 15 30 30 H 1.08995 * 109.57455 * 88.59607 * 18 16 15 31 31 H 1.09000 * 109.49290 * 179.91140 * 19 18 16 32 32 H 1.08997 * 109.49168 * 299.95576 * 19 18 16 33 33 H 1.08994 * 109.22182 * 19.70257 * 20 19 18 34 34 H 1.08997 * 109.22266 * 139.10672 * 20 19 18 35 35 H 1.09002 * 109.47142 * 202.64940 * 21 20 19 36 36 H 1.08999 * 109.48203 * 322.67676 * 21 20 19 37 37 H 1.09006 * 109.57460 * 119.65016 * 22 21 20 38 38 H 1.09004 * 109.56938 * 240.02156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 1.2792 2.7465 -0.0006 5 1 3.0979 1.6965 1.2124 6 1 3.0978 1.6965 -1.2126 7 6 2.0082 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3276 -2.3877 -0.0005 10 6 2.0015 -3.5549 -0.0005 11 8 3.2165 -3.5549 -0.0010 12 6 1.2574 -4.8437 -0.0011 13 8 0.0429 -4.8439 -0.0011 14 7 1.9313 -6.0109 -0.0016 15 6 3.3469 -6.4327 -0.0023 16 6 2.8980 -7.6725 0.7677 17 1 2.8172 -7.5242 1.8445 18 6 3.5770 -8.9810 0.3897 19 6 2.6083 -10.1412 0.6674 20 6 1.3404 -9.9535 -0.1663 21 6 0.2095 -9.3725 0.6899 22 6 0.3672 -7.8537 0.7781 23 6 1.5925 -7.4322 0.0042 24 1 1.5933 -7.8749 -0.9919 25 1 -0.4850 0.8401 0.0004 26 1 0.3576 -2.3877 -0.0005 27 1 3.7363 -6.6533 -0.9962 28 1 3.9988 -5.7745 0.5721 29 1 3.8349 -8.9660 -0.6693 30 1 4.4806 -9.1089 0.9856 31 1 3.0840 -11.0844 0.3986 32 1 2.3493 -10.1533 1.7261 33 1 1.5512 -9.2738 -0.9919 34 1 1.0278 -10.9180 -0.5663 35 1 -0.7512 -9.6124 0.2343 36 1 0.2545 -9.8013 1.6910 37 1 -0.5155 -7.3701 0.3594 38 1 0.4873 -7.5590 1.8206 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707348502.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:50 Heat of formation + Delta-G solvation = -53.605670 kcal Electronic energy + Delta-G solvation = -20613.748755 eV Core-core repulsion = 17456.606126 eV Total energy + Delta-G solvation = -3157.142628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.38524 -40.52153 -38.75481 -36.88141 -36.15713 -33.60838 -33.43914 -30.89682 -28.04605 -27.69754 -26.23520 -24.18447 -23.31594 -21.51597 -21.29140 -20.42574 -19.39990 -18.36250 -17.74249 -16.97885 -16.61684 -16.27206 -15.97719 -15.71039 -15.65102 -15.13009 -14.90262 -14.39160 -13.91017 -13.78349 -13.70989 -13.68852 -13.25558 -12.98349 -12.95642 -12.60621 -12.40984 -12.14165 -12.06909 -11.79812 -11.67204 -11.41096 -11.26434 -11.23003 -10.87799 -10.29887 -10.12531 -9.74263 -8.67382 -6.13113 0.58459 1.37374 1.47288 1.49669 1.60776 2.24763 2.34829 2.96349 3.12807 3.26428 3.68285 3.84923 3.95383 4.05422 4.10782 4.17003 4.28421 4.34407 4.41089 4.51642 4.60662 4.77578 4.85805 4.91118 4.96994 5.14893 5.20621 5.22319 5.26740 5.33160 5.37306 5.44459 5.50151 5.63333 5.66399 6.25236 6.49491 6.73224 6.95962 7.26638 7.77853 8.48548 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.044984 B = 0.004234 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.292612 B = 6611.375179 C = 7120.184035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.005 4.005 3 Si 1.012 2.988 4 H -0.266 1.266 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.514 5.514 10 C 0.394 3.606 11 O -0.609 6.609 12 C 0.538 3.462 13 O -0.573 6.573 14 N -0.629 5.629 15 C 0.108 3.892 16 C -0.100 4.100 17 H 0.097 0.903 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.138 4.138 21 C -0.104 4.104 22 C -0.125 4.125 23 C 0.121 3.879 24 H 0.116 0.884 25 H 0.289 0.711 26 H 0.399 0.601 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.819 -19.340 0.706 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.209 4.209 3 Si 0.833 3.167 4 H -0.190 1.190 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.117 0.883 9 N -0.148 5.148 10 C 0.179 3.821 11 O -0.498 6.498 12 C 0.325 3.675 13 O -0.453 6.453 14 N -0.363 5.363 15 C -0.014 4.014 16 C -0.119 4.119 17 H 0.116 0.884 18 C -0.139 4.139 19 C -0.151 4.151 20 C -0.175 4.175 21 C -0.142 4.142 22 C -0.163 4.163 23 C 0.020 3.980 24 H 0.133 0.867 25 H 0.099 0.901 26 H 0.233 0.767 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.673 -18.990 0.698 19.569 hybrid contribution -0.669 1.312 -0.011 1.472 sum 4.004 -17.679 0.687 18.139 Atomic orbital electron populations 1.69558 1.07919 1.30887 1.45247 1.26580 0.96512 1.03530 0.94316 0.84728 0.77726 0.74601 0.79689 1.19014 1.18772 1.18767 1.19948 0.93662 0.83014 1.51008 0.88323 1.41657 1.10128 1.04758 1.58252 1.19551 0.87925 0.84952 0.89697 1.90508 1.13588 1.87186 1.58529 1.19750 0.86340 0.84478 0.76967 1.90655 1.14552 1.87699 1.52396 1.49575 1.11930 1.04607 1.70187 1.23257 0.82312 0.94090 1.01697 1.22823 0.94275 0.95162 0.99604 0.88436 1.21504 0.98564 0.91034 1.02768 1.21720 0.94844 0.98181 1.00313 1.22007 0.95020 1.01560 0.98955 1.21601 0.99496 0.91694 1.01436 1.21333 0.96960 0.98401 0.99626 1.22892 0.96791 0.76956 1.01314 0.86681 0.90086 0.76676 0.87749 0.90945 0.90250 0.89583 0.89911 0.91595 0.91050 0.90588 0.91553 0.90515 0.93637 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.72 13.03 21.77 0.28 -49.44 16 2 C -0.01 -0.29 5.51 85.14 0.47 0.18 16 3 Si 1.01 41.61 29.56 68.60 2.03 43.64 16 4 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.35 -20.15 9.67 84.35 0.82 -19.33 16 8 H 0.10 5.84 7.15 -2.91 -0.02 5.82 16 9 N -0.51 -29.64 5.25 -308.88 -1.62 -31.26 16 10 C 0.39 21.50 7.82 87.08 0.68 22.18 16 11 O -0.61 -34.37 14.76 -3.71 -0.05 -34.42 16 12 C 0.54 25.93 8.07 87.08 0.70 26.64 16 13 O -0.57 -29.64 16.54 -3.54 -0.06 -29.70 16 14 N -0.63 -23.59 3.62 -881.47 -3.19 -26.78 16 15 C 0.11 3.16 7.30 80.40 0.59 3.74 16 16 C -0.10 -2.14 3.60 -11.11 -0.04 -2.18 16 17 H 0.10 2.22 8.04 -2.39 -0.02 2.20 16 18 C -0.10 -1.34 5.57 30.55 0.17 -1.17 16 19 C -0.11 -1.30 5.83 30.79 0.18 -1.12 16 20 C -0.14 -1.89 5.44 30.66 0.17 -1.73 16 21 C -0.10 -1.83 6.10 30.67 0.19 -1.65 16 22 C -0.12 -3.31 5.68 29.90 0.17 -3.14 16 23 C 0.12 3.26 2.79 38.79 0.11 3.36 16 24 H 0.12 2.70 5.53 -2.39 -0.01 2.69 16 25 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 26 H 0.40 23.38 7.35 -92.70 -0.68 22.70 16 27 H 0.10 2.59 8.03 -2.39 -0.02 2.57 16 28 H 0.07 2.44 7.31 -2.39 -0.02 2.42 16 29 H 0.08 0.93 7.98 -2.38 -0.02 0.91 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.78 7.43 -2.39 -0.02 0.77 16 33 H 0.07 1.09 4.62 -2.39 -0.01 1.08 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.18 7.60 -2.39 -0.02 1.16 16 37 H 0.04 1.48 7.74 -2.38 -0.02 1.46 16 38 H 0.05 1.50 7.98 -2.39 -0.02 1.48 16 Total: -1.00 -70.67 305.07 1.98 -68.69 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.40 Total: 33.50 kcal Atomic # 6 Polarization: 21.59 SS G_CDS: 4.20 Total: 25.79 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -4.53 Total: -107.48 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -0.11 Total: -64.12 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -70.67 1.98 -68.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707348502.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.081 kcal (2) G-P(sol) polarization free energy of solvation -70.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds