Wall clock time and date at job start Mon Mar 30 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48506 * 109.46987 * 239.99288 * 3 2 1 5 5 H 1.48494 * 109.47386 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46829 * 119.99787 * 3 2 1 7 7 C 1.39580 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00387 * 180.02562 * 7 2 1 9 9 N 1.36117 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00399 * 179.97438 * 9 7 2 11 11 O 1.21506 * 119.99830 * 359.97438 * 10 9 7 12 12 C 1.48835 * 120.00348 * 180.02562 * 10 9 7 13 13 O 1.21436 * 119.99456 * 359.97438 * 12 10 9 14 14 N 1.34771 * 119.99831 * 179.97438 * 12 10 9 15 15 C 1.46507 * 119.99773 * 179.97438 * 14 12 10 16 16 H 1.08995 * 110.82992 * 31.29181 * 15 14 12 17 17 C 1.56247 * 110.94216 * 267.53441 * 15 14 12 18 18 C 1.55914 * 105.87142 * 216.59480 * 17 15 14 19 19 C 1.49974 * 104.08480 * 353.42103 * 18 17 15 20 20 H 1.08994 * 108.49992 * 281.21680 * 19 18 17 21 21 C 1.49978 * 126.87606 * 150.35382 * 19 18 17 22 22 C 1.55921 * 104.08160 * 209.63688 * 21 19 18 23 23 C 1.56248 * 105.87153 * 6.58546 * 22 21 19 24 24 C 1.51728 * 110.93903 * 155.00133 * 15 14 12 25 25 H 1.08998 * 110.89239 * 45.32082 * 24 15 14 26 26 H 0.96999 * 120.00116 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00208 * 359.97438 * 9 7 2 28 28 H 0.96999 * 120.00467 * 359.97438 * 14 12 10 29 29 H 1.09005 * 110.17037 * 335.69810 * 17 15 14 30 30 H 1.09000 * 110.17252 * 97.41433 * 17 15 14 31 31 H 1.09008 * 110.50356 * 112.06930 * 18 17 15 32 32 H 1.08993 * 110.50546 * 234.62960 * 18 17 15 33 33 H 1.09000 * 110.50738 * 328.28855 * 21 19 18 34 34 H 1.08998 * 110.50342 * 90.84786 * 21 19 18 35 35 H 1.08997 * 110.16454 * 247.48325 * 22 21 19 36 36 H 1.08998 * 110.16956 * 125.68780 * 22 21 19 37 37 H 1.09002 * 110.94192 * 267.09176 * 23 22 21 38 38 H 1.08990 * 110.94113 * 143.40395 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0980 1.6964 -1.2125 5 1 1.2792 2.7465 -0.0006 6 1 3.0978 1.6964 1.2125 7 6 2.0080 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0010 9 7 1.3275 -2.3876 0.0005 10 6 2.0014 -3.5548 0.0005 11 8 3.2164 -3.5549 0.0001 12 6 1.2572 -4.8438 0.0000 13 8 0.0429 -4.8437 0.0000 14 7 1.9311 -6.0109 -0.0006 15 6 1.1986 -7.2797 -0.0006 16 1 0.2507 -7.1800 -0.5293 17 6 0.9743 -7.7951 1.4573 18 6 1.1082 -9.3469 1.3864 19 6 1.2270 -9.6362 -0.0804 20 1 0.2323 -9.5904 -0.5236 21 6 1.9600 -10.7801 -0.7156 22 6 2.4146 -10.2189 -2.0974 23 6 2.0433 -8.7012 -2.0854 24 6 2.0395 -8.3913 -0.6000 25 1 3.0554 -8.3660 -0.2057 26 1 -0.4850 0.8400 -0.0004 27 1 0.3575 -2.3877 0.0005 28 1 2.9011 -6.0110 -0.0009 29 1 1.7327 -7.3824 2.1227 30 1 -0.0209 -7.5180 1.8050 31 1 2.0027 -9.6775 1.9145 32 1 0.2217 -9.8260 1.8017 33 1 2.8247 -11.0606 -0.1142 34 1 1.2950 -11.6335 -0.8477 35 1 1.8857 -10.7289 -2.9025 36 1 3.4910 -10.3415 -2.2172 37 1 1.0570 -8.5380 -2.5198 38 1 2.7985 -8.1113 -2.6045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707904793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:55 Heat of formation + Delta-G solvation = -84.994315 kcal Electronic energy + Delta-G solvation = -20178.192904 eV Core-core repulsion = 17019.689161 eV Total energy + Delta-G solvation = -3158.503742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.50523 -39.08464 -37.10670 -34.90384 -34.17416 -32.80385 -31.37604 -29.61469 -26.80097 -26.30271 -25.27152 -22.74629 -20.90351 -20.53061 -19.66224 -19.08883 -18.29765 -17.01672 -16.15497 -15.61638 -15.15108 -14.88878 -14.70175 -14.53822 -14.28886 -13.83792 -13.15474 -13.03584 -12.76456 -12.56937 -12.51590 -11.86621 -11.73399 -11.56538 -11.35641 -11.16997 -10.95359 -10.74381 -10.62063 -10.56702 -10.43684 -10.39294 -10.28786 -10.13507 -9.69744 -8.66218 -8.24263 -8.21246 -6.65837 -3.98288 2.47290 3.16275 3.18155 3.19255 3.44853 3.93786 4.07939 4.28415 4.53915 4.57803 4.90126 5.00494 5.02804 5.09390 5.19350 5.23401 5.35590 5.39402 5.48799 5.52281 5.60490 5.65346 5.75855 5.86010 5.95935 5.98063 6.04612 6.06446 6.12361 6.25326 6.31519 6.37735 6.88711 7.31883 7.71829 7.91799 8.35093 8.65930 8.97637 9.33380 9.86739 10.49014 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043444 B = 0.003751 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.353378 B = 7461.993005 C = 7680.799050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.031 3.969 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.112 0.888 9 N -0.499 5.499 10 C 0.393 3.607 11 O -0.599 6.599 12 C 0.514 3.486 13 O -0.547 6.547 14 N -0.707 5.707 15 C 0.153 3.847 16 H 0.096 0.904 17 C -0.136 4.136 18 C -0.102 4.102 19 C -0.109 4.109 20 H 0.068 0.932 21 C -0.106 4.106 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.116 4.116 25 H 0.086 0.914 26 H 0.281 0.719 27 H 0.405 0.595 28 H 0.409 0.591 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.888 -17.893 -0.757 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.129 0.871 9 N -0.133 5.133 10 C 0.178 3.822 11 O -0.487 6.487 12 C 0.299 3.701 13 O -0.424 6.424 14 N -0.360 5.360 15 C 0.048 3.952 16 H 0.114 0.886 17 C -0.175 4.175 18 C -0.140 4.140 19 C -0.128 4.128 20 H 0.087 0.913 21 C -0.143 4.143 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.135 4.135 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.240 0.760 28 H 0.245 0.755 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.619 -17.723 -0.769 17.814 hybrid contribution 0.186 0.806 0.029 0.827 sum 1.806 -16.917 -0.740 17.030 Atomic orbital electron populations 1.69476 1.06514 1.29439 1.45317 1.25580 0.95621 1.00451 0.95910 0.85782 0.78873 0.79343 0.79506 1.19382 1.20598 1.19379 1.19832 0.93950 0.81932 1.48031 0.87050 1.41558 1.10477 1.04229 1.57080 1.19004 0.87835 0.84284 0.91099 1.90576 1.12916 1.86669 1.58556 1.20693 0.87524 0.85995 0.75929 1.90677 1.14085 1.88104 1.49568 1.45700 1.10867 1.04412 1.74988 1.21386 0.96209 0.81782 0.95834 0.88613 1.23349 1.02784 0.94322 0.97003 1.21412 1.01804 0.95598 0.95215 1.21555 0.99861 0.95259 0.96096 0.91329 1.21432 0.99784 0.97014 0.96100 1.22907 1.00997 0.95257 0.96794 1.21971 1.02064 0.95576 0.95437 1.22639 0.99633 0.94992 0.96223 0.89608 0.90877 0.76007 0.75507 0.91000 0.91100 0.91621 0.91647 0.91737 0.91806 0.91822 0.91658 0.91258 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.45 13.03 55.53 0.72 -22.72 16 2 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 3 Si 0.94 20.19 29.56 -169.99 -5.02 15.16 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 7 C -0.31 -8.53 9.67 -15.15 -0.15 -8.67 16 8 H 0.11 3.15 7.15 -52.48 -0.38 2.77 16 9 N -0.50 -13.50 5.25 -11.59 -0.06 -13.56 16 10 C 0.39 10.02 7.82 -11.87 -0.09 9.93 16 11 O -0.60 -16.17 16.03 5.36 0.09 -16.08 16 12 C 0.51 11.29 7.87 -11.88 -0.09 11.19 16 13 O -0.55 -12.94 16.11 5.42 0.09 -12.85 16 14 N -0.71 -12.24 5.15 -53.37 -0.27 -12.52 16 15 C 0.15 2.16 2.98 -66.83 -0.20 1.96 16 16 H 0.10 1.50 7.54 -51.93 -0.39 1.11 16 17 C -0.14 -1.71 6.68 -23.43 -0.16 -1.86 16 18 C -0.10 -1.00 6.73 -26.68 -0.18 -1.18 16 19 C -0.11 -1.05 2.48 -91.18 -0.23 -1.27 16 20 H 0.07 0.69 8.01 -51.93 -0.42 0.28 16 21 C -0.11 -0.87 6.73 -26.67 -0.18 -1.04 16 22 C -0.12 -1.02 6.94 -23.43 -0.16 -1.19 16 23 C -0.11 -1.17 6.61 -25.63 -0.17 -1.34 16 24 C -0.12 -1.29 2.54 -89.46 -0.23 -1.52 16 25 H 0.09 0.94 8.13 -51.93 -0.42 0.52 16 26 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 27 H 0.40 11.02 7.35 -40.82 -0.30 10.72 16 28 H 0.41 6.74 8.10 -40.82 -0.33 6.41 16 29 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -30.14 314.95 -7.24 -37.38 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -5.59 Total: 14.72 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -1.93 Total: 5.73 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.39 Total: -48.80 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: 0.17 Total: -28.93 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.14 -7.24 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707904793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.615 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds