Wall clock time and date at job start Mon Mar 30 2020 04:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86804 * 119.99841 * 2 1 4 4 H 1.48506 * 109.46987 * 239.99288 * 3 2 1 5 5 H 1.48494 * 109.47386 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46829 * 119.99787 * 3 2 1 7 7 C 1.39580 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00387 * 180.02562 * 7 2 1 9 9 N 1.36117 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00399 * 179.97438 * 9 7 2 11 11 O 1.21506 * 119.99830 * 359.97438 * 10 9 7 12 12 C 1.48835 * 120.00348 * 180.02562 * 10 9 7 13 13 O 1.21436 * 119.99456 * 359.97438 * 12 10 9 14 14 N 1.34771 * 119.99831 * 179.97438 * 12 10 9 15 15 C 1.46507 * 119.99773 * 179.97438 * 14 12 10 16 16 H 1.08995 * 110.82992 * 31.29181 * 15 14 12 17 17 C 1.56247 * 110.94216 * 267.53441 * 15 14 12 18 18 C 1.55914 * 105.87142 * 216.59480 * 17 15 14 19 19 C 1.49974 * 104.08480 * 353.42103 * 18 17 15 20 20 H 1.08994 * 108.49992 * 281.21680 * 19 18 17 21 21 C 1.49978 * 126.87606 * 150.35382 * 19 18 17 22 22 C 1.55921 * 104.08160 * 209.63688 * 21 19 18 23 23 C 1.56248 * 105.87153 * 6.58546 * 22 21 19 24 24 C 1.51728 * 110.93903 * 155.00133 * 15 14 12 25 25 H 1.08998 * 110.89239 * 45.32082 * 24 15 14 26 26 H 0.96999 * 120.00116 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00208 * 359.97438 * 9 7 2 28 28 H 0.96999 * 120.00467 * 359.97438 * 14 12 10 29 29 H 1.09005 * 110.17037 * 335.69810 * 17 15 14 30 30 H 1.09000 * 110.17252 * 97.41433 * 17 15 14 31 31 H 1.09008 * 110.50356 * 112.06930 * 18 17 15 32 32 H 1.08993 * 110.50546 * 234.62960 * 18 17 15 33 33 H 1.09000 * 110.50738 * 328.28855 * 21 19 18 34 34 H 1.08998 * 110.50342 * 90.84786 * 21 19 18 35 35 H 1.08997 * 110.16454 * 247.48325 * 22 21 19 36 36 H 1.08998 * 110.16956 * 125.68780 * 22 21 19 37 37 H 1.09002 * 110.94192 * 267.09176 * 23 22 21 38 38 H 1.08990 * 110.94113 * 143.40395 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0980 1.6964 -1.2125 5 1 1.2792 2.7465 -0.0006 6 1 3.0978 1.6964 1.2125 7 6 2.0080 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0010 9 7 1.3275 -2.3876 0.0005 10 6 2.0014 -3.5548 0.0005 11 8 3.2164 -3.5549 0.0001 12 6 1.2572 -4.8438 0.0000 13 8 0.0429 -4.8437 0.0000 14 7 1.9311 -6.0109 -0.0006 15 6 1.1986 -7.2797 -0.0006 16 1 0.2507 -7.1800 -0.5293 17 6 0.9743 -7.7951 1.4573 18 6 1.1082 -9.3469 1.3864 19 6 1.2270 -9.6362 -0.0804 20 1 0.2323 -9.5904 -0.5236 21 6 1.9600 -10.7801 -0.7156 22 6 2.4146 -10.2189 -2.0974 23 6 2.0433 -8.7012 -2.0854 24 6 2.0395 -8.3913 -0.6000 25 1 3.0554 -8.3660 -0.2057 26 1 -0.4850 0.8400 -0.0004 27 1 0.3575 -2.3877 0.0005 28 1 2.9011 -6.0110 -0.0009 29 1 1.7327 -7.3824 2.1227 30 1 -0.0209 -7.5180 1.8050 31 1 2.0027 -9.6775 1.9145 32 1 0.2217 -9.8260 1.8017 33 1 2.8247 -11.0606 -0.1142 34 1 1.2950 -11.6335 -0.8477 35 1 1.8857 -10.7289 -2.9025 36 1 3.4910 -10.3415 -2.2172 37 1 1.0570 -8.5380 -2.5198 38 1 2.7985 -8.1113 -2.6045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707904793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:55 Heat of formation + Delta-G solvation = -105.345304 kcal Electronic energy + Delta-G solvation = -20179.075389 eV Core-core repulsion = 17019.689161 eV Total energy + Delta-G solvation = -3159.386227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.70803 -40.68577 -39.00282 -36.53287 -35.81303 -34.01841 -33.41517 -30.61247 -28.03678 -27.63853 -26.64811 -24.44120 -21.87763 -21.65426 -21.00118 -20.37303 -20.21630 -18.74751 -17.72561 -17.10626 -16.59929 -16.39134 -16.10125 -15.81579 -15.62022 -15.30469 -14.75994 -14.60392 -13.93840 -13.81823 -13.66676 -13.47165 -12.98080 -12.87186 -12.60233 -12.51914 -12.31154 -12.12442 -12.08268 -11.80867 -11.66550 -11.60100 -11.44887 -11.18940 -10.97525 -10.29123 -10.25273 -10.09279 -8.66834 -6.12177 0.59253 1.40425 1.48778 1.53516 1.82989 2.29063 2.36242 3.05096 3.14292 3.29750 3.65808 3.76821 3.99313 4.10734 4.15111 4.19654 4.30661 4.41138 4.56571 4.66059 4.69609 4.73548 4.81372 5.01541 5.05224 5.13004 5.15005 5.22199 5.23785 5.26445 5.29195 5.50260 5.54624 5.58376 5.67443 6.16912 6.39126 6.80725 7.01888 7.26807 7.78652 8.48808 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043444 B = 0.003751 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.353378 B = 7461.993005 C = 7680.799050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.004 4.004 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.348 4.348 8 H 0.099 0.901 9 N -0.510 5.510 10 C 0.388 3.612 11 O -0.617 6.617 12 C 0.519 3.481 13 O -0.568 6.568 14 N -0.686 5.686 15 C 0.144 3.856 16 H 0.079 0.921 17 C -0.135 4.135 18 C -0.093 4.093 19 C -0.099 4.099 20 H 0.062 0.938 21 C -0.101 4.101 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.117 4.117 25 H 0.093 0.907 26 H 0.289 0.711 27 H 0.400 0.600 28 H 0.415 0.585 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 -19.215 -0.656 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.831 3.169 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.117 0.883 9 N -0.144 5.144 10 C 0.173 3.827 11 O -0.507 6.507 12 C 0.302 3.698 13 O -0.447 6.447 14 N -0.337 5.337 15 C 0.040 3.960 16 H 0.097 0.903 17 C -0.174 4.174 18 C -0.131 4.131 19 C -0.118 4.118 20 H 0.081 0.919 21 C -0.139 4.139 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.136 4.136 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.235 0.765 28 H 0.252 0.748 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.337 -19.094 -0.667 19.248 hybrid contribution -0.053 1.141 -0.014 1.142 sum 2.283 -17.954 -0.681 18.111 Atomic orbital electron populations 1.69546 1.07863 1.30918 1.45031 1.26558 0.96506 1.03510 0.94297 0.84744 0.77749 0.74693 0.79679 1.18813 1.19056 1.18796 1.19962 0.93723 0.83101 1.50937 0.88295 1.41655 1.10212 1.04815 1.57722 1.19653 0.87893 0.85282 0.89878 1.90540 1.13791 1.87307 1.59070 1.20099 0.87040 0.86047 0.76595 1.90667 1.14632 1.88299 1.51145 1.45703 1.11202 1.04261 1.72540 1.21692 0.95894 0.80850 0.97566 0.90319 1.23326 1.01927 0.96811 0.95317 1.21365 1.03209 0.92906 0.95595 1.21558 0.99439 0.94976 0.95815 0.91928 1.21437 1.00218 0.96607 0.95613 1.22881 1.01694 0.93362 0.97455 1.22018 1.01532 0.97378 0.94632 1.22639 0.99637 0.94224 0.97054 0.88891 0.90058 0.76521 0.74838 0.91446 0.92267 0.90109 0.90309 0.90704 0.90414 0.90879 0.90821 0.92039 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.68 13.03 21.76 0.28 -48.39 16 2 C 0.00 -0.23 5.51 85.14 0.47 0.24 16 3 Si 1.01 41.02 29.56 68.60 2.03 43.05 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.35 -19.82 9.67 84.35 0.82 -19.00 16 8 H 0.10 5.77 7.15 -2.91 -0.02 5.75 16 9 N -0.51 -28.56 5.25 -308.87 -1.62 -30.18 16 10 C 0.39 20.35 7.82 87.08 0.68 21.03 16 11 O -0.62 -34.09 16.03 -3.73 -0.06 -34.15 16 12 C 0.52 23.33 7.87 87.08 0.69 24.02 16 13 O -0.57 -27.58 16.11 -3.51 -0.06 -27.64 16 14 N -0.69 -23.89 5.15 -441.08 -2.27 -26.16 16 15 C 0.14 4.02 2.98 45.70 0.14 4.16 16 16 H 0.08 2.51 7.54 -2.39 -0.02 2.49 16 17 C -0.13 -3.28 6.68 32.73 0.22 -3.06 16 18 C -0.09 -1.58 6.73 30.63 0.21 -1.37 16 19 C -0.10 -1.66 2.48 -11.16 -0.03 -1.69 16 20 H 0.06 1.15 8.01 -2.39 -0.02 1.13 16 21 C -0.10 -1.32 6.73 30.63 0.21 -1.11 16 22 C -0.12 -1.64 6.94 32.73 0.23 -1.42 16 23 C -0.12 -2.30 6.61 31.31 0.21 -2.09 16 24 C -0.12 -2.44 2.54 -10.04 -0.03 -2.46 16 25 H 0.09 1.85 8.13 -2.39 -0.02 1.83 16 26 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 27 H 0.40 22.68 7.35 -92.71 -0.68 21.99 16 28 H 0.41 13.61 8.10 -92.71 -0.75 12.86 16 29 H 0.07 1.70 8.09 -2.38 -0.02 1.68 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -65.62 314.95 1.75 -63.87 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: -0.35 Total: 42.38 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 3.80 Total: 17.23 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -3.61 Total: -104.74 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: -0.12 Total: -61.80 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -65.62 1.75 -63.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707904793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.472 kcal (2) G-P(sol) polarization free energy of solvation -65.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds