Wall clock time and date at job start Mon Mar 30 2020 04:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48499 * 109.46996 * 240.00334 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99925 * 3 2 1 7 7 C 1.39584 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99709 * 179.97438 * 7 2 1 9 9 N 1.36116 * 119.99895 * 0.28142 * 7 2 1 10 10 C 1.34775 * 119.99752 * 179.71850 * 9 7 2 11 11 O 1.21493 * 120.00560 * 0.02562 * 10 9 7 12 12 C 1.48835 * 119.99725 * 179.97438 * 10 9 7 13 13 O 1.21443 * 120.00218 * 0.02562 * 12 10 9 14 14 N 1.34783 * 119.99942 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99904 * 180.02562 * 14 12 10 16 16 H 1.08999 * 110.45458 * 36.14046 * 15 14 12 17 17 C 1.55922 * 110.50596 * 273.54756 * 15 14 12 18 18 C 1.56254 * 105.86829 * 247.93577 * 17 15 14 19 19 C 1.51731 * 101.91822 * 25.24898 * 18 17 15 20 20 H 1.08998 * 110.89334 * 72.82987 * 19 18 17 21 21 C 1.51729 * 122.52544 * 206.95489 * 19 18 17 22 22 C 1.56248 * 101.92167 * 153.03806 * 21 19 18 23 23 C 1.55914 * 105.86868 * 334.75198 * 22 21 19 24 24 C 1.49965 * 110.50754 * 158.88665 * 15 14 12 25 25 H 1.08997 * 108.50590 * 197.42348 * 24 15 14 26 26 H 0.96996 * 120.00539 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00316 * 359.72072 * 9 7 2 28 28 H 0.97000 * 119.99715 * 0.02562 * 14 12 10 29 29 H 1.09004 * 110.16916 * 7.03448 * 17 15 14 30 30 H 1.09001 * 110.17343 * 128.75898 * 17 15 14 31 31 H 1.08996 * 110.93990 * 143.40420 * 18 17 15 32 32 H 1.09003 * 110.93833 * 267.09358 * 18 17 15 33 33 H 1.09000 * 110.93895 * 271.19571 * 21 19 18 34 34 H 1.09001 * 110.94049 * 34.84494 * 21 19 18 35 35 H 1.09001 * 110.16905 * 93.85010 * 22 21 19 36 36 H 1.08997 * 110.17464 * 215.57526 * 22 21 19 37 37 H 1.09003 * 110.50778 * 112.07272 * 23 22 21 38 38 H 1.08999 * 110.50864 * 234.76744 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0977 1.6965 -1.2125 5 1 1.2790 2.7465 -0.0006 6 1 3.0978 1.6965 1.2125 7 6 2.0081 -1.2088 0.0005 8 1 3.0881 -1.2087 0.0001 9 7 1.3276 -2.3876 -0.0047 10 6 2.0016 -3.5547 -0.0099 11 8 3.2165 -3.5547 -0.0095 12 6 1.2574 -4.8437 -0.0151 13 8 0.0430 -4.8438 -0.0151 14 7 1.9314 -6.0109 -0.0208 15 6 1.1990 -7.2796 -0.0265 16 1 0.2940 -7.1943 -0.6281 17 6 0.8482 -7.7143 1.4292 18 6 1.7022 -8.9921 1.7111 19 6 2.8657 -8.8086 0.7546 20 1 3.5354 -8.0225 1.1034 21 6 3.6511 -9.9783 0.1915 22 6 4.1712 -9.3961 -1.1620 23 6 3.1638 -8.2742 -1.5587 24 6 2.0709 -8.3874 -0.5380 25 1 1.4345 -9.2252 -0.8227 26 1 -0.4851 0.8400 0.0004 27 1 0.3576 -2.3877 -0.0048 28 1 2.9014 -6.0108 -0.0212 29 1 1.1119 -6.9235 2.1315 30 1 -0.2141 -7.9462 1.5066 31 1 2.0470 -9.0099 2.7450 32 1 1.1412 -9.8959 1.4733 33 1 4.4813 -10.2417 0.8469 34 1 3.0026 -10.8379 0.0228 35 1 5.1689 -8.9767 -1.0321 36 1 4.1878 -10.1748 -1.9245 37 1 3.6401 -7.2955 -1.5013 38 1 2.7709 -8.4504 -2.5600 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707904794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:01 Heat of formation + Delta-G solvation = -82.943477 kcal Electronic energy + Delta-G solvation = -20412.373410 eV Core-core repulsion = 17253.958599 eV Total energy + Delta-G solvation = -3158.414811 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63916 -39.00336 -37.07642 -34.79761 -34.16393 -32.71232 -31.36898 -29.59562 -26.78213 -26.27696 -25.36059 -22.87864 -20.90963 -20.24281 -19.56491 -19.20618 -18.32135 -16.99836 -16.05477 -15.51785 -15.19922 -14.96775 -14.67496 -14.54909 -14.24995 -13.81424 -13.26599 -12.99947 -12.75394 -12.63320 -12.40952 -11.76650 -11.62006 -11.45660 -11.34307 -11.16679 -10.96502 -10.69418 -10.57980 -10.54648 -10.47233 -10.41017 -10.28878 -10.02863 -9.69486 -8.67991 -8.23851 -8.20928 -6.65487 -3.97969 2.48322 3.16483 3.18371 3.19498 3.48101 3.95418 4.07852 4.29750 4.56130 4.59546 4.94353 5.00579 5.07309 5.14839 5.18754 5.21311 5.42266 5.46377 5.49775 5.55544 5.65932 5.69728 5.79189 5.89793 5.93470 6.04625 6.05630 6.09503 6.16706 6.27392 6.31934 6.41317 6.90929 7.32180 7.72452 7.92732 8.35597 8.66801 8.98078 9.33816 9.87103 10.49383 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036810 B = 0.004123 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.470585 B = 6790.075137 C = 7164.899769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.112 0.888 9 N -0.500 5.500 10 C 0.394 3.606 11 O -0.599 6.599 12 C 0.513 3.487 13 O -0.547 6.547 14 N -0.705 5.705 15 C 0.159 3.841 16 H 0.089 0.911 17 C -0.133 4.133 18 C -0.109 4.109 19 C -0.113 4.113 20 H 0.082 0.918 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.117 4.117 25 H 0.078 0.922 26 H 0.281 0.719 27 H 0.405 0.595 28 H 0.408 0.592 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -17.035 0.176 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.175 4.175 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.129 0.871 9 N -0.134 5.134 10 C 0.178 3.822 11 O -0.487 6.487 12 C 0.298 3.702 13 O -0.424 6.424 14 N -0.359 5.359 15 C 0.054 3.946 16 H 0.107 0.893 17 C -0.172 4.172 18 C -0.147 4.147 19 C -0.131 4.131 20 H 0.101 0.899 21 C -0.148 4.148 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.136 4.136 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.240 0.760 28 H 0.244 0.756 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.370 -16.884 0.165 17.217 hybrid contribution 0.161 0.791 0.003 0.808 sum 3.530 -16.092 0.168 16.476 Atomic orbital electron populations 1.69474 1.06511 1.29432 1.45351 1.25576 0.95614 1.00438 0.95918 0.85786 0.78875 0.79367 0.79497 1.19395 1.20599 1.19384 1.19828 0.93938 0.81934 1.48034 0.87065 1.41559 1.10476 1.04232 1.57110 1.19007 0.87834 0.84293 0.91061 1.90572 1.12931 1.86674 1.58543 1.20692 0.87535 0.85977 0.76043 1.90681 1.14052 1.88112 1.49526 1.45735 1.10898 1.04298 1.74972 1.20808 0.95378 0.82168 0.96252 0.89281 1.23411 1.00041 0.97346 0.96397 1.21954 0.95946 0.97793 0.98991 1.22457 0.96395 0.98823 0.95465 0.89943 1.21948 0.99377 0.97138 0.96337 1.22910 0.98953 0.97506 0.96581 1.21422 0.95701 0.99522 0.98106 1.21865 0.97052 0.98403 0.96268 0.90360 0.90885 0.76006 0.75557 0.90844 0.91064 0.91649 0.91465 0.91762 0.91547 0.91528 0.91894 0.91077 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.45 13.03 55.53 0.72 -22.72 16 2 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 3 Si 0.94 20.18 29.56 -169.99 -5.02 15.15 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 7 C -0.31 -8.51 9.67 -15.15 -0.15 -8.66 16 8 H 0.11 3.14 7.15 -52.49 -0.38 2.77 16 9 N -0.50 -13.49 5.25 -11.59 -0.06 -13.55 16 10 C 0.39 10.01 7.82 -11.87 -0.09 9.92 16 11 O -0.60 -16.13 16.03 5.37 0.09 -16.04 16 12 C 0.51 11.23 7.86 -11.87 -0.09 11.14 16 13 O -0.55 -12.87 16.18 5.42 0.09 -12.78 16 14 N -0.71 -12.18 4.84 -54.38 -0.26 -12.44 16 15 C 0.16 2.24 3.11 -67.88 -0.21 2.03 16 16 H 0.09 1.36 7.67 -51.93 -0.40 0.97 16 17 C -0.13 -1.70 6.73 -23.42 -0.16 -1.85 16 18 C -0.11 -1.10 6.62 -25.63 -0.17 -1.27 16 19 C -0.11 -1.16 2.96 -89.46 -0.27 -1.42 16 20 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 21 C -0.11 -0.95 6.61 -25.63 -0.17 -1.12 16 22 C -0.12 -1.08 6.94 -23.43 -0.16 -1.25 16 23 C -0.11 -1.17 6.55 -26.68 -0.17 -1.35 16 24 C -0.12 -1.30 2.17 -91.19 -0.20 -1.50 16 25 H 0.08 0.79 8.01 -51.93 -0.42 0.38 16 26 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 27 H 0.40 11.01 7.35 -40.82 -0.30 10.71 16 28 H 0.41 6.81 7.03 -40.82 -0.29 6.53 16 29 H 0.07 1.07 7.98 -51.93 -0.41 0.66 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.86 7.06 -51.93 -0.37 0.49 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -29.97 312.54 -7.17 -37.14 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -5.49 Total: 15.14 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.94 Total: 5.39 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.40 Total: -48.71 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: 0.17 Total: -28.82 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.97 -7.17 -37.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707904794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.806 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds