Wall clock time and date at job start Mon Mar 30 2020 04:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48499 * 109.46996 * 240.00334 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99925 * 3 2 1 7 7 C 1.39584 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99709 * 179.97438 * 7 2 1 9 9 N 1.36116 * 119.99895 * 0.28142 * 7 2 1 10 10 C 1.34775 * 119.99752 * 179.71850 * 9 7 2 11 11 O 1.21493 * 120.00560 * 0.02562 * 10 9 7 12 12 C 1.48835 * 119.99725 * 179.97438 * 10 9 7 13 13 O 1.21443 * 120.00218 * 0.02562 * 12 10 9 14 14 N 1.34783 * 119.99942 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99904 * 180.02562 * 14 12 10 16 16 H 1.08999 * 110.45458 * 36.14046 * 15 14 12 17 17 C 1.55922 * 110.50596 * 273.54756 * 15 14 12 18 18 C 1.56254 * 105.86829 * 247.93577 * 17 15 14 19 19 C 1.51731 * 101.91822 * 25.24898 * 18 17 15 20 20 H 1.08998 * 110.89334 * 72.82987 * 19 18 17 21 21 C 1.51729 * 122.52544 * 206.95489 * 19 18 17 22 22 C 1.56248 * 101.92167 * 153.03806 * 21 19 18 23 23 C 1.55914 * 105.86868 * 334.75198 * 22 21 19 24 24 C 1.49965 * 110.50754 * 158.88665 * 15 14 12 25 25 H 1.08997 * 108.50590 * 197.42348 * 24 15 14 26 26 H 0.96996 * 120.00539 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00316 * 359.72072 * 9 7 2 28 28 H 0.97000 * 119.99715 * 0.02562 * 14 12 10 29 29 H 1.09004 * 110.16916 * 7.03448 * 17 15 14 30 30 H 1.09001 * 110.17343 * 128.75898 * 17 15 14 31 31 H 1.08996 * 110.93990 * 143.40420 * 18 17 15 32 32 H 1.09003 * 110.93833 * 267.09358 * 18 17 15 33 33 H 1.09000 * 110.93895 * 271.19571 * 21 19 18 34 34 H 1.09001 * 110.94049 * 34.84494 * 21 19 18 35 35 H 1.09001 * 110.16905 * 93.85010 * 22 21 19 36 36 H 1.08997 * 110.17464 * 215.57526 * 22 21 19 37 37 H 1.09003 * 110.50778 * 112.07272 * 23 22 21 38 38 H 1.08999 * 110.50864 * 234.76744 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0977 1.6965 -1.2125 5 1 1.2790 2.7465 -0.0006 6 1 3.0978 1.6965 1.2125 7 6 2.0081 -1.2088 0.0005 8 1 3.0881 -1.2087 0.0001 9 7 1.3276 -2.3876 -0.0047 10 6 2.0016 -3.5547 -0.0099 11 8 3.2165 -3.5547 -0.0095 12 6 1.2574 -4.8437 -0.0151 13 8 0.0430 -4.8438 -0.0151 14 7 1.9314 -6.0109 -0.0208 15 6 1.1990 -7.2796 -0.0265 16 1 0.2940 -7.1943 -0.6281 17 6 0.8482 -7.7143 1.4292 18 6 1.7022 -8.9921 1.7111 19 6 2.8657 -8.8086 0.7546 20 1 3.5354 -8.0225 1.1034 21 6 3.6511 -9.9783 0.1915 22 6 4.1712 -9.3961 -1.1620 23 6 3.1638 -8.2742 -1.5587 24 6 2.0709 -8.3874 -0.5380 25 1 1.4345 -9.2252 -0.8227 26 1 -0.4851 0.8400 0.0004 27 1 0.3576 -2.3877 -0.0048 28 1 2.9014 -6.0108 -0.0212 29 1 1.1119 -6.9235 2.1315 30 1 -0.2141 -7.9462 1.5066 31 1 2.0470 -9.0099 2.7450 32 1 1.1412 -9.8959 1.4733 33 1 4.4813 -10.2417 0.8469 34 1 3.0026 -10.8379 0.0228 35 1 5.1689 -8.9767 -1.0321 36 1 4.1878 -10.1748 -1.9245 37 1 3.6401 -7.2955 -1.5013 38 1 2.7709 -8.4504 -2.5600 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707904794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:00 Heat of formation + Delta-G solvation = -103.024099 kcal Electronic energy + Delta-G solvation = -20413.244171 eV Core-core repulsion = 17253.958599 eV Total energy + Delta-G solvation = -3159.285572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.84385 -40.64422 -38.96394 -36.48227 -35.72039 -33.97057 -33.40169 -30.62030 -28.00550 -27.64739 -26.69727 -24.61024 -21.85544 -21.41786 -20.86890 -20.46732 -20.32024 -18.75638 -17.71423 -16.88887 -16.66080 -16.30912 -16.21977 -15.83330 -15.65979 -15.34931 -14.79638 -14.57029 -14.03959 -13.72656 -13.66018 -13.48443 -12.97369 -12.70647 -12.59721 -12.38398 -12.30298 -12.12639 -12.10847 -11.83805 -11.66604 -11.55384 -11.37119 -11.25408 -10.91006 -10.28995 -10.23854 -10.15139 -8.66638 -6.11972 0.60145 1.40400 1.48764 1.53437 1.84275 2.29337 2.36859 3.06712 3.14669 3.28092 3.68236 3.75238 4.01775 4.11267 4.14725 4.24634 4.29878 4.57448 4.57871 4.63051 4.70044 4.72471 4.86917 4.98721 5.04915 5.13650 5.16962 5.23738 5.23985 5.28714 5.31837 5.49722 5.52859 5.60041 5.67690 6.17276 6.39267 6.80898 7.02249 7.27194 7.78991 8.49022 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.036810 B = 0.004123 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.470585 B = 6790.075137 C = 7164.899769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.004 4.004 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.511 5.511 10 C 0.388 3.612 11 O -0.618 6.618 12 C 0.518 3.482 13 O -0.566 6.566 14 N -0.684 5.684 15 C 0.150 3.850 16 H 0.077 0.923 17 C -0.133 4.133 18 C -0.099 4.099 19 C -0.109 4.109 20 H 0.065 0.935 21 C -0.103 4.103 22 C -0.118 4.118 23 C -0.114 4.114 24 C -0.117 4.117 25 H 0.099 0.901 26 H 0.289 0.711 27 H 0.400 0.600 28 H 0.412 0.588 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.201 -18.467 0.207 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.116 0.884 9 N -0.144 5.144 10 C 0.173 3.827 11 O -0.508 6.508 12 C 0.301 3.699 13 O -0.446 6.446 14 N -0.336 5.336 15 C 0.046 3.954 16 H 0.095 0.905 17 C -0.172 4.172 18 C -0.136 4.136 19 C -0.128 4.128 20 H 0.083 0.917 21 C -0.141 4.141 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.136 4.136 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.235 0.765 28 H 0.249 0.751 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.941 -18.362 0.198 18.781 hybrid contribution -0.030 1.160 -0.020 1.161 sum 3.911 -17.202 0.179 17.642 Atomic orbital electron populations 1.69544 1.07852 1.30910 1.45058 1.26549 0.96496 1.03478 0.94300 0.84750 0.77755 0.74733 0.79658 1.18842 1.19034 1.18819 1.19952 0.93696 0.83109 1.50943 0.88351 1.41654 1.10211 1.04810 1.57751 1.19669 0.87894 0.85321 0.89840 1.90535 1.13848 1.87322 1.59067 1.20086 0.87062 0.86002 0.76730 1.90669 1.14514 1.88292 1.51081 1.45732 1.11141 1.04234 1.72493 1.21149 0.95405 0.81199 0.97634 0.90470 1.23391 1.01142 0.98182 0.94499 1.21919 0.95361 0.96901 0.99412 1.22453 0.96231 0.99310 0.94805 0.91668 1.21938 0.99624 0.96663 0.95857 1.22890 0.98171 0.97122 0.97338 1.21470 0.95973 0.99340 0.98383 1.21858 0.97244 0.97328 0.97146 0.88252 0.90062 0.76506 0.75123 0.93165 0.90399 0.90924 0.89238 0.90839 0.89949 0.91684 0.90302 0.93193 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.69 13.03 21.76 0.28 -48.41 16 2 C 0.00 -0.21 5.51 85.14 0.47 0.26 16 3 Si 1.01 41.08 29.56 68.60 2.03 43.11 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.35 -19.83 9.67 84.35 0.82 -19.01 16 8 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 9 N -0.51 -28.61 5.25 -308.88 -1.62 -30.23 16 10 C 0.39 20.40 7.82 87.08 0.68 21.08 16 11 O -0.62 -34.30 16.03 -3.69 -0.06 -34.36 16 12 C 0.52 23.31 7.86 87.08 0.68 24.00 16 13 O -0.57 -27.34 16.18 -3.54 -0.06 -27.40 16 14 N -0.68 -23.96 4.84 -444.27 -2.15 -26.11 16 15 C 0.15 4.14 3.11 45.03 0.14 4.28 16 16 H 0.08 2.35 7.67 -2.39 -0.02 2.33 16 17 C -0.13 -3.28 6.73 32.74 0.22 -3.06 16 18 C -0.10 -1.73 6.62 31.31 0.21 -1.52 16 19 C -0.11 -2.00 2.96 -10.05 -0.03 -2.03 16 20 H 0.06 1.42 8.11 -2.39 -0.02 1.40 16 21 C -0.10 -1.43 6.61 31.31 0.21 -1.22 16 22 C -0.12 -1.79 6.94 32.73 0.23 -1.56 16 23 C -0.11 -2.27 6.55 30.63 0.20 -2.07 16 24 C -0.12 -2.39 2.17 -11.16 -0.02 -2.42 16 25 H 0.10 1.70 8.01 -2.39 -0.02 1.68 16 26 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 27 H 0.40 22.69 7.35 -92.71 -0.68 22.01 16 28 H 0.41 13.99 7.03 -92.71 -0.65 13.34 16 29 H 0.05 1.47 7.98 -2.39 -0.02 1.45 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 1.19 7.06 -2.39 -0.02 1.18 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -65.56 312.54 1.97 -63.59 By element: Atomic # 1 Polarization: 43.34 SS G_CDS: -0.25 Total: 43.09 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 3.80 Total: 16.73 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.49 Total: -104.75 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -0.12 Total: -61.76 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -65.56 1.97 -63.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707904794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.439 kcal (2) G-P(sol) polarization free energy of solvation -65.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds