Wall clock time and date at job start Mon Mar 30 2020 05:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42893 * 109.53825 * 332.91788 * 3 2 1 5 5 C 1.53120 * 109.50279 * 212.81871 * 3 2 1 6 6 C 1.53119 * 109.16202 * 297.72049 * 5 3 2 7 7 C 1.53044 * 109.27589 * 302.34077 * 6 5 3 8 8 N 1.46847 * 109.51335 * 59.18419 * 7 6 5 9 9 C 1.46899 * 110.99862 * 174.15436 * 8 7 6 10 10 C 1.50696 * 109.47180 * 66.05223 * 9 8 7 11 11 O 1.21288 * 119.99894 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00241 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00355 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47386 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00241 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00028 * 179.97438 * 14 13 12 17 17 N 1.31523 * 120.00212 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00196 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47040 * 89.99856 * 18 16 14 20 20 H 1.48503 * 109.47197 * 210.00042 * 18 16 14 21 21 H 1.48507 * 109.46857 * 329.99870 * 18 16 14 22 22 C 1.46847 * 111.20163 * 298.24410 * 8 7 6 23 23 H 4.38571 * 5.43823 * 179.97438 * 4 1 2 24 24 H 0.96696 * 114.00189 * 299.89977 * 4 3 2 25 25 H 1.08993 * 109.52850 * 177.81133 * 5 3 2 26 26 H 1.09003 * 109.52252 * 57.62101 * 5 3 2 27 27 H 1.09000 * 109.50507 * 182.40742 * 6 5 3 28 28 H 1.08996 * 109.50916 * 62.28058 * 6 5 3 29 29 H 1.09002 * 109.46396 * 179.19729 * 7 6 5 30 30 H 1.08994 * 109.46485 * 299.17654 * 7 6 5 31 31 H 1.09004 * 109.46859 * 186.04870 * 9 8 7 32 32 H 1.08996 * 109.47621 * 306.04495 * 9 8 7 33 33 H 0.97006 * 120.00015 * 359.97438 * 12 10 9 34 34 H 1.09004 * 109.47185 * 299.99846 * 13 12 10 35 35 H 1.09006 * 109.47126 * 59.99843 * 13 12 10 36 36 H 0.96991 * 119.99798 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.46836 * 301.74653 * 22 8 7 38 38 H 1.08995 * 109.45748 * 181.76188 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1244 -1.1981 0.6131 5 6 3.1566 1.2139 0.7823 6 6 2.6897 2.4945 0.0848 7 6 3.1993 2.4984 -1.3583 8 7 2.6827 1.3189 -2.0642 9 6 3.0371 1.3611 -3.4891 10 6 4.5319 1.2420 -3.6387 11 8 5.2330 1.1332 -2.6549 12 7 5.0898 1.2574 -4.8654 13 6 6.5431 1.1422 -5.0107 14 6 6.9067 1.1853 -6.4725 15 1 6.1328 1.2886 -7.2187 16 6 8.2276 1.0939 -6.8573 17 7 8.5450 1.1320 -8.1331 18 14 9.5663 0.9159 -5.5667 19 1 9.8039 -0.5247 -5.2955 20 1 10.8191 1.5393 -6.0638 21 1 9.1399 1.5916 -4.3149 22 6 3.1568 0.0769 -1.4406 23 1 -1.0498 -0.0002 0.0003 24 1 2.8410 -1.3108 1.5307 25 1 4.2458 1.1937 0.8156 26 1 2.7596 1.1864 1.7971 27 1 3.0859 3.3618 0.6129 28 1 1.6004 2.5332 0.0861 29 1 2.8566 3.4022 -1.8621 30 1 4.2890 2.4735 -1.3587 31 1 2.5530 0.5340 -4.0086 32 1 2.7030 2.3053 -3.9190 33 1 4.5292 1.3447 -5.6522 34 1 7.0269 1.9692 -4.4911 35 1 6.8775 0.1978 -4.5812 36 1 9.4742 1.0680 -8.4037 37 1 4.2468 0.0635 -1.4405 38 1 2.7831 -0.7780 -2.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708112622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:36 Heat of formation + Delta-G solvation = -22.160719 kcal Electronic energy + Delta-G solvation = -20465.973991 eV Core-core repulsion = 17310.194918 eV Total energy + Delta-G solvation = -3155.779073 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.31463 -38.63454 -36.23790 -34.35314 -33.26225 -32.44751 -32.28125 -29.71237 -28.72561 -26.72311 -23.54486 -23.32081 -21.89821 -20.82316 -19.99885 -18.46370 -17.30936 -16.82056 -16.13914 -15.95842 -15.32959 -15.09888 -14.95741 -14.51837 -14.34000 -13.80182 -13.51199 -13.44446 -12.83435 -12.61809 -12.39438 -12.23656 -11.78688 -11.51403 -11.20976 -11.07400 -10.95318 -10.80781 -10.76353 -10.60638 -10.42010 -10.03647 -9.93926 -9.89253 -9.52296 -8.80797 -8.20595 -7.94357 -6.24406 -4.27002 2.69756 2.79410 3.08613 3.24449 3.31100 3.38725 3.68365 3.96328 4.15996 4.30538 4.43624 4.68409 4.79122 4.99627 5.10690 5.23015 5.33631 5.40618 5.51387 5.55978 5.61217 5.69007 5.79675 5.90068 5.95433 6.01190 6.19991 6.32414 6.74054 6.94104 7.01620 7.03626 7.17546 7.35387 7.45022 7.57598 8.07480 8.45730 8.70413 8.85042 9.35497 10.87533 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.033322 B = 0.004227 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.073328 B = 6622.810511 C = 6837.930728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.187 4.187 3 C 0.248 3.752 4 O -0.547 6.547 5 C -0.140 4.140 6 C -0.111 4.111 7 C 0.036 3.964 8 N -0.508 5.508 9 C 0.035 3.965 10 C 0.467 3.533 11 O -0.556 6.556 12 N -0.701 5.701 13 C 0.219 3.781 14 C -0.545 4.545 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.262 1.262 22 C 0.051 3.949 23 H 0.214 0.786 24 H 0.379 0.621 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.397 0.603 34 H 0.024 0.976 35 H 0.020 0.980 36 H 0.268 0.732 37 H 0.097 0.903 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.970 0.856 16.049 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.187 4.187 3 C 0.207 3.793 4 O -0.352 6.352 5 C -0.178 4.178 6 C -0.148 4.148 7 C -0.091 4.091 8 N -0.232 5.232 9 C -0.097 4.097 10 C 0.252 3.748 11 O -0.438 6.438 12 N -0.350 5.350 13 C 0.097 3.903 14 C -0.583 4.583 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.704 3.296 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.186 1.186 22 C -0.076 4.076 23 H 0.231 0.769 24 H 0.226 0.774 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.231 0.769 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.520 0.695 16.051 21.655 hybrid contribution 0.850 -0.016 0.492 0.982 sum -13.670 0.679 16.543 21.471 Atomic orbital electron populations 1.24830 0.95748 1.00088 1.00780 1.23614 0.94692 1.00262 1.00144 1.18014 0.82149 0.84767 0.94401 1.86605 1.76030 1.41612 1.30952 1.22243 1.02223 0.94609 0.98687 1.21504 1.01473 0.96731 0.95135 1.22335 1.00321 0.92597 0.93888 1.62246 1.57724 1.02323 1.00861 1.22279 0.91633 1.05011 0.90754 1.21883 0.91461 0.77423 0.84072 1.90543 1.64277 1.51393 1.37545 1.46345 1.10484 1.70909 1.07213 1.19492 0.76385 0.96559 0.97887 1.21094 0.94332 1.52870 0.89980 0.90239 1.24803 0.98502 0.93887 0.95412 1.69880 1.18840 1.49204 1.14970 0.86811 0.81358 0.79163 0.82296 1.19830 1.20869 1.18614 1.22194 1.02274 0.92257 0.90900 0.76895 0.77373 0.89976 0.91585 0.91110 0.91246 0.90930 0.91412 0.87831 0.87704 0.76902 0.95772 0.96198 0.92228 0.88498 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 19.25 29.55 0.57 -1.53 16 2 C -0.19 -2.30 10.60 -37.12 -0.39 -2.70 16 3 C 0.25 3.19 1.09 -93.32 -0.10 3.09 16 4 O -0.55 -6.88 12.95 -35.23 -0.46 -7.33 16 5 C -0.14 -1.58 5.11 -26.61 -0.14 -1.72 16 6 C -0.11 -1.22 5.83 -26.65 -0.16 -1.38 16 7 C 0.04 0.48 5.10 -3.83 -0.02 0.46 16 8 N -0.51 -6.96 4.45 -236.11 -1.05 -8.01 16 9 C 0.03 0.47 5.86 -4.98 -0.03 0.44 16 10 C 0.47 8.37 7.24 -10.99 -0.08 8.29 16 11 O -0.56 -11.67 11.62 5.55 0.06 -11.61 16 12 N -0.70 -13.69 5.55 -61.47 -0.34 -14.04 16 13 C 0.22 5.32 4.50 -5.19 -0.02 5.29 16 14 C -0.54 -14.84 9.83 -34.44 -0.34 -15.18 16 15 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 17 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 18 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 22 C 0.05 0.77 4.04 -3.83 -0.02 0.75 16 23 H 0.21 1.49 7.80 -54.10 -0.42 1.07 16 24 H 0.38 3.06 9.03 45.56 0.41 3.47 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.77 7.36 -51.93 -0.38 0.39 16 29 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 30 H 0.07 1.08 6.00 -51.93 -0.31 0.77 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 1.17 8.06 -51.93 -0.42 0.76 16 33 H 0.40 6.79 8.32 -40.82 -0.34 6.45 16 34 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.10 1.74 5.36 -51.93 -0.28 1.46 16 38 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 LS Contribution 312.28 15.07 4.71 4.71 Total: -1.00 -32.70 312.28 -6.41 -39.11 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.62 Total: 8.12 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -0.82 Total: -2.08 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.62 Total: -47.67 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.39 Total: -18.94 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.70 -6.41 -39.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708112622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.953 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds