Wall clock time and date at job start Mon Mar 30 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.42901 * 110.64054 * 168.95903 * 3 2 1 5 5 C 1.55164 * 110.72257 * 292.29301 * 3 2 1 6 6 C 1.55130 * 101.48531 * 82.69874 * 5 3 2 7 7 N 1.47433 * 104.72194 * 37.29592 * 6 5 3 8 8 C 1.34771 * 125.64645 * 155.81907 * 7 6 5 9 9 O 1.21278 * 119.99839 * 179.69304 * 8 7 6 10 10 C 1.50699 * 120.00148 * 359.69227 * 8 7 6 11 11 H 1.09004 * 109.46963 * 319.99765 * 10 8 7 12 12 N 1.46905 * 109.47256 * 200.00322 * 10 8 7 13 13 C 1.52997 * 109.47337 * 80.00074 * 10 8 7 14 14 C 1.53000 * 109.47060 * 185.00273 * 13 10 8 15 15 C 1.50706 * 109.46735 * 180.02562 * 14 13 10 16 16 H 1.07996 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99611 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00327 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46999 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46979 * 120.00025 * 19 17 15 22 22 H 1.48498 * 109.46942 * 239.99938 * 19 17 15 23 23 C 1.47027 * 108.70123 * 335.55494 * 7 6 5 24 24 H 4.40745 * 5.34196 * 179.97438 * 4 1 2 25 25 H 0.96700 * 113.99992 * 56.85872 * 4 3 2 26 26 H 1.08996 * 111.00190 * 200.93963 * 5 3 2 27 27 H 1.08997 * 110.99886 * 324.75237 * 5 3 2 28 28 H 1.08997 * 110.49701 * 278.45796 * 6 5 3 29 29 H 1.08994 * 110.34387 * 156.05944 * 6 5 3 30 30 H 1.00898 * 110.99705 * 300.00162 * 12 10 8 31 31 H 1.00897 * 110.99904 * 63.95071 * 12 10 8 32 32 H 1.09002 * 109.47153 * 64.99954 * 13 10 8 33 33 H 1.09001 * 109.46832 * 305.00144 * 13 10 8 34 34 H 1.09001 * 109.47194 * 299.99650 * 14 13 10 35 35 H 1.08992 * 109.47399 * 59.99823 * 14 13 10 36 36 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.88164 * 120.70329 * 23 7 6 38 38 H 1.09006 * 109.87698 * 241.71416 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1491 1.3134 -0.2561 5 6 3.1952 -0.5496 1.3428 6 6 3.1245 -2.0804 1.1013 7 7 3.4887 -2.2532 -0.3168 8 6 4.0026 -3.3720 -0.8650 9 8 4.2606 -3.4034 -2.0496 10 6 4.2565 -4.5839 -0.0061 11 1 4.6582 -4.2690 0.9570 12 7 5.2232 -5.4646 -0.6754 13 6 2.9438 -5.3393 0.2111 14 6 3.1767 -6.4975 1.1833 15 6 1.8838 -7.2418 1.3967 16 1 0.9858 -6.9206 0.8900 17 6 1.8475 -8.3329 2.2389 18 7 2.9411 -8.7244 2.8555 19 14 0.2447 -9.2551 2.5040 20 1 -0.8307 -8.6196 1.7011 21 1 0.4104 -10.6681 2.0783 22 1 -0.1194 -9.2112 3.9430 23 6 3.1925 -1.0050 -1.0351 24 1 -1.0502 -0.0005 -0.0001 25 1 2.8355 1.9833 0.3668 26 1 4.2222 -0.2237 1.5076 27 1 2.5560 -0.2567 2.1756 28 1 2.1146 -2.4489 1.2812 29 1 3.8380 -2.5984 1.7421 30 1 4.8739 -5.7704 -1.5712 31 1 6.1191 -5.0107 -0.7724 32 1 2.5878 -5.7307 -0.7419 33 1 2.1986 -4.6607 0.6263 34 1 3.9219 -7.1761 0.7681 35 1 3.5327 -6.1061 2.1362 36 1 2.9157 -9.4923 3.4477 37 1 4.1031 -0.6129 -1.4879 38 1 2.4448 -1.1898 -1.8065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708139948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:47 Heat of formation + Delta-G solvation = -30.970293 kcal Electronic energy + Delta-G solvation = -20217.817463 eV Core-core repulsion = 17061.656378 eV Total energy + Delta-G solvation = -3156.161085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46467 -38.66760 -35.89570 -35.22664 -33.11718 -32.80336 -30.75413 -30.09697 -29.12035 -26.37318 -24.41430 -22.80992 -22.36461 -20.38958 -19.39419 -19.17177 -17.50391 -16.62341 -16.30553 -15.76223 -15.59988 -15.22333 -14.73806 -14.68850 -14.38393 -14.08919 -13.71267 -12.99004 -12.75666 -12.38911 -12.33744 -12.05510 -11.97984 -11.64069 -11.52597 -11.09146 -10.91753 -10.89813 -10.67295 -10.53291 -10.30862 -10.13260 -9.79654 -9.38429 -8.99946 -8.72123 -8.37682 -8.22679 -5.94835 -3.96880 2.33299 2.40116 2.72643 2.87363 3.32854 3.40642 3.44402 3.79598 3.82809 4.19479 4.31628 4.49334 4.80339 4.92806 5.05615 5.11466 5.27183 5.37069 5.41103 5.44036 5.58716 5.59339 5.70272 5.78707 5.83500 6.13983 6.43390 6.65382 7.06799 7.11532 7.22081 7.35105 7.51994 7.75138 7.78648 7.95118 8.12085 8.22199 8.47633 9.11208 9.66395 11.16102 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.004632 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.018666 B = 6043.194400 C = 6844.863304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.222 4.222 3 C 0.234 3.766 4 O -0.538 6.538 5 C -0.153 4.153 6 C 0.099 3.901 7 N -0.615 5.615 8 C 0.500 3.500 9 O -0.550 6.550 10 C 0.084 3.916 11 H 0.098 0.902 12 N -0.806 5.806 13 C -0.095 4.095 14 C 0.032 3.968 15 C -0.521 4.521 16 H 0.052 0.948 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.125 3.875 24 H 0.222 0.778 25 H 0.386 0.614 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.348 0.652 31 H 0.334 0.666 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.035 0.965 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.085 0.915 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 19.674 -2.112 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.222 4.222 3 C 0.193 3.807 4 O -0.344 6.344 5 C -0.191 4.191 6 C -0.024 4.024 7 N -0.352 5.352 8 C 0.289 3.711 9 O -0.428 6.428 10 C -0.032 4.032 11 H 0.116 0.884 12 N -0.334 5.334 13 C -0.133 4.133 14 C -0.005 4.005 15 C -0.560 4.560 16 H 0.070 0.930 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.716 3.284 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.211 1.211 23 C 0.001 3.999 24 H 0.239 0.761 25 H 0.234 0.766 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.109 18.621 -2.540 18.793 hybrid contribution -1.493 0.604 -0.034 1.611 sum -1.384 19.225 -2.574 19.446 Atomic orbital electron populations 1.25098 0.95933 0.97396 0.99105 1.23289 0.94414 1.02740 1.01754 1.18639 0.82307 0.84295 0.95491 1.86581 1.72357 1.17102 1.58397 1.23547 1.03175 0.95669 0.96688 1.22436 1.02315 0.95277 0.82356 1.48552 1.64061 1.12521 1.10032 1.22604 0.75349 0.83784 0.89378 1.90659 1.52692 1.82916 1.16493 1.21836 0.97335 0.87717 0.96333 0.88380 1.59034 1.04680 1.40564 1.29092 1.21658 0.91266 0.98733 1.01678 1.19017 0.97127 0.91614 0.92775 1.21310 0.95592 1.12705 1.26377 0.92970 1.24982 0.96061 0.97244 0.95977 1.69980 1.26986 1.26300 1.29896 0.86609 0.84119 0.79899 0.77785 1.19877 1.21032 1.21100 1.21570 1.01446 0.83401 0.93454 0.76084 0.76583 0.88530 0.88968 0.90177 0.89045 0.83766 0.85383 0.92840 0.92868 0.94627 0.96869 0.93147 0.89644 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 19.25 29.55 0.57 -0.90 16 2 C -0.22 -2.35 11.86 -37.13 -0.44 -2.79 16 3 C 0.23 2.40 1.29 -91.57 -0.12 2.28 16 4 O -0.54 -4.94 13.08 -35.23 -0.46 -5.40 16 5 C -0.15 -1.33 6.30 -24.46 -0.15 -1.48 16 6 C 0.10 1.13 6.02 -2.41 -0.01 1.11 16 7 N -0.62 -8.64 3.33 -170.38 -0.57 -9.20 16 8 C 0.50 8.42 7.09 -10.99 -0.08 8.34 16 9 O -0.55 -10.74 16.58 5.56 0.09 -10.65 16 10 C 0.08 1.44 2.56 -68.86 -0.18 1.26 16 11 H 0.10 1.57 6.92 -51.93 -0.36 1.21 16 12 N -0.81 -13.83 8.44 -5.65 -0.05 -13.87 16 13 C -0.10 -1.94 4.77 -26.73 -0.13 -2.07 16 14 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 15 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.12 1.62 6.19 -3.06 -0.02 1.60 16 24 H 0.22 1.30 7.80 -54.08 -0.42 0.88 16 25 H 0.39 1.89 9.05 45.56 0.41 2.31 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.09 0.65 8.02 -51.93 -0.42 0.23 16 28 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 29 H 0.09 0.98 6.92 -51.93 -0.36 0.62 16 30 H 0.35 6.07 8.58 -39.29 -0.34 5.73 16 31 H 0.33 4.97 9.06 -39.29 -0.36 4.62 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 1.03 7.39 -51.93 -0.38 0.65 16 34 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 38 H 0.08 1.07 7.83 -51.93 -0.41 0.67 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -34.17 326.05 -6.13 -40.29 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.67 Total: 8.70 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.10 Total: -5.39 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.12 Total: -49.08 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.37 Total: -16.05 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.17 -6.13 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708139948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.323 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds