Wall clock time and date at job start Mon Mar 30 2020 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47234 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.46959 * 180.02562 * 18 17 16 20 20 C 1.34516 * 125.79338 * 90.00268 * 19 18 17 21 21 C 1.41376 * 106.84226 * 179.97438 * 20 19 18 22 22 C 1.34508 * 106.84172 * 0.02562 * 21 20 19 23 23 O 1.34303 * 125.78717 * 269.69242 * 19 18 17 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.00901 * 110.99892 * 296.04699 * 13 11 10 30 30 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 31 31 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 32 32 H 1.09004 * 109.46914 * 300.00062 * 17 16 14 33 33 H 1.09009 * 109.46627 * 59.99476 * 17 16 14 34 34 H 1.09004 * 109.47555 * 300.00078 * 18 17 16 35 35 H 1.08999 * 109.47409 * 60.00423 * 18 17 16 36 36 H 1.08003 * 126.57257 * 0.03229 * 20 19 18 37 37 H 1.07997 * 126.57760 * 179.97438 * 21 20 19 38 38 H 1.08000 * 125.79243 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7877 -5.0072 0.8415 13 7 0.7287 -5.1181 -1.2556 14 6 2.4546 -6.1299 0.1237 15 8 2.7867 -6.7532 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9040 -7.5706 1.4507 18 6 4.3168 -7.7325 2.9150 19 6 5.2914 -8.8753 3.0388 20 6 6.6301 -8.7812 2.9459 21 6 7.1456 -10.0857 3.1226 22 6 6.0913 -10.8990 3.3124 23 8 4.9711 -10.1595 3.2664 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.0240 -4.4000 -1.3319 30 1 1.3488 -5.1023 -2.0514 31 1 2.6917 -5.9607 2.1187 32 1 3.4323 -8.4894 1.1021 33 1 4.7866 -7.3631 0.8454 34 1 4.7887 -6.8137 3.2632 35 1 3.4345 -7.9398 3.5204 36 1 7.2013 -7.8815 2.7709 37 1 8.1863 -10.3739 3.1073 38 1 6.1378 -11.9651 3.4789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709509525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:16 Heat of formation + Delta-G solvation = -42.561397 kcal Electronic energy + Delta-G solvation = -19207.414782 eV Core-core repulsion = 16050.751069 eV Total energy + Delta-G solvation = -3156.663713 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.80890 -39.61546 -35.98423 -35.22533 -33.30046 -32.85901 -32.17076 -29.89413 -28.33856 -26.38641 -24.31097 -22.85082 -22.00653 -20.87445 -20.59014 -19.75601 -17.69575 -17.18375 -16.50117 -16.22111 -15.77412 -15.54436 -14.72824 -14.69415 -14.41869 -14.04024 -13.82644 -13.15311 -13.08025 -12.98428 -12.91199 -12.51244 -12.32585 -12.16314 -11.75720 -11.50142 -11.09768 -10.92847 -10.69276 -10.17441 -10.00096 -9.93187 -9.30905 -9.22358 -9.02065 -8.72774 -8.45099 -8.18809 -6.09707 -4.12881 1.44989 2.35598 2.67235 2.93348 3.26390 3.31790 3.33279 3.36186 4.38284 4.43814 4.64707 4.67059 4.78637 4.93476 5.10180 5.17794 5.19460 5.26625 5.52072 5.56233 5.58827 5.73837 5.75456 5.78041 5.86097 6.23965 6.27597 6.46303 6.51585 6.86459 6.87693 7.42147 7.50773 7.60133 7.68755 7.87396 7.90927 8.29940 8.45494 8.93188 9.52120 11.01209 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.003101 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.973119 B = 9027.791183 C = 9722.661821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.097 0.903 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.537 6.537 16 N -0.736 5.736 17 C 0.125 3.875 18 C -0.052 4.052 19 C -0.007 4.007 20 C -0.206 4.206 21 C -0.214 4.214 22 C -0.043 4.043 23 O -0.175 6.175 24 H 0.262 0.738 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.354 0.646 30 H 0.346 0.654 31 H 0.403 0.597 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.744 -17.742 8.223 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.115 0.885 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.413 6.413 16 N -0.390 5.390 17 C 0.001 3.999 18 C -0.089 4.089 19 C -0.058 4.058 20 C -0.225 4.225 21 C -0.233 4.233 22 C -0.110 4.110 23 O -0.071 6.071 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.170 0.830 30 H 0.159 0.841 31 H 0.237 0.763 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 9.297 -18.900 7.804 22.462 hybrid contribution 1.093 2.108 0.230 2.385 sum 10.390 -16.793 8.034 21.319 Atomic orbital electron populations 1.69952 1.06023 1.26794 1.50443 1.25017 0.94874 0.99319 0.95128 0.86580 0.79824 0.83346 0.78183 1.20620 1.21151 1.19876 1.21183 0.93024 0.90904 1.51113 0.92714 1.19105 0.93729 0.91107 0.97384 1.22382 0.99870 0.93942 1.01511 1.21478 0.94666 0.92234 0.95656 0.88499 1.58740 1.18486 1.55899 1.03203 1.20911 0.81039 0.84437 0.82336 1.90640 1.60106 1.53401 1.37117 1.45952 1.47387 1.35274 1.10406 1.21219 0.93412 0.90536 0.94715 1.20295 0.97742 0.93384 0.97509 1.22120 0.94809 0.83421 1.05406 1.21661 0.93592 0.99038 1.08184 1.21854 1.00257 0.93271 1.07949 1.24040 0.83032 0.97564 1.06388 1.84027 1.34999 1.18264 1.69827 0.92869 0.96403 0.96287 0.92498 0.92682 0.83023 0.84128 0.76302 0.91272 0.91142 0.87914 0.89162 0.83291 0.83434 0.78113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.57 4.74 -27.89 -0.13 0.44 16 10 C -0.14 -2.65 4.78 -26.73 -0.13 -2.77 16 11 C 0.07 1.26 3.21 -68.86 -0.22 1.04 16 12 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 13 N -0.83 -14.38 8.94 -5.65 -0.05 -14.43 16 14 C 0.53 8.65 7.08 -10.98 -0.08 8.57 16 15 O -0.54 -10.63 16.25 5.56 0.09 -10.54 16 16 N -0.74 -9.10 5.56 -60.29 -0.33 -9.44 16 17 C 0.13 1.40 5.66 -4.05 -0.02 1.38 16 18 C -0.05 -0.44 5.86 -27.88 -0.16 -0.60 16 19 C -0.01 -0.07 6.58 -35.62 -0.23 -0.30 16 20 C -0.21 -1.97 10.81 -39.70 -0.43 -2.40 16 21 C -0.21 -1.85 10.91 -39.71 -0.43 -2.28 16 22 C -0.04 -0.35 12.09 29.41 0.36 0.00 16 23 O -0.18 -1.84 10.65 5.70 0.06 -1.78 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.35 6.12 7.55 -39.29 -0.30 5.82 16 30 H 0.35 6.08 8.58 -39.29 -0.34 5.74 16 31 H 0.40 3.95 8.47 -40.82 -0.35 3.61 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.20 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -32.89 328.64 -6.99 -39.88 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.53 Total: 10.38 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.90 Total: -9.97 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.35 Total: -49.04 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.15 Total: -12.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.89 -6.99 -39.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709509525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.682 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds