Wall clock time and date at job start Mon Mar 30 2020 04:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47069 * 304.99600 * 11 10 9 13 13 N 1.46898 * 109.47357 * 64.99939 * 11 10 9 14 14 C 1.50703 * 109.46801 * 184.99876 * 11 10 9 15 15 O 1.21275 * 120.00353 * 259.99446 * 14 11 10 16 16 N 1.34781 * 119.99971 * 80.00207 * 14 11 10 17 17 C 1.46497 * 120.00245 * 179.97438 * 16 14 11 18 18 C 1.52995 * 109.47234 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.46959 * 180.02562 * 18 17 16 20 20 C 1.34516 * 125.79338 * 90.00268 * 19 18 17 21 21 C 1.41376 * 106.84226 * 179.97438 * 20 19 18 22 22 C 1.34508 * 106.84172 * 0.02562 * 21 20 19 23 23 O 1.34303 * 125.78717 * 269.69242 * 19 18 17 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.00901 * 110.99892 * 296.04699 * 13 11 10 30 30 H 1.00899 * 111.00057 * 60.00247 * 13 11 10 31 31 H 0.97000 * 119.99714 * 359.97438 * 16 14 11 32 32 H 1.09004 * 109.46914 * 300.00062 * 17 16 14 33 33 H 1.09009 * 109.46627 * 59.99476 * 17 16 14 34 34 H 1.09004 * 109.47555 * 300.00078 * 18 17 16 35 35 H 1.08999 * 109.47409 * 60.00423 * 18 17 16 36 36 H 1.08003 * 126.57257 * 0.03229 * 20 19 18 37 37 H 1.07997 * 126.57760 * 179.97438 * 21 20 19 38 38 H 1.08000 * 125.79243 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7877 -5.0072 0.8415 13 7 0.7287 -5.1181 -1.2556 14 6 2.4546 -6.1299 0.1237 15 8 2.7867 -6.7532 -0.8622 16 7 2.9571 -6.4594 1.3302 17 6 3.9040 -7.5706 1.4507 18 6 4.3168 -7.7325 2.9150 19 6 5.2914 -8.8753 3.0388 20 6 6.6301 -8.7812 2.9459 21 6 7.1456 -10.0857 3.1226 22 6 6.0913 -10.8990 3.3124 23 8 4.9711 -10.1595 3.2664 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.0240 -4.4000 -1.3319 30 1 1.3488 -5.1023 -2.0514 31 1 2.6917 -5.9607 2.1187 32 1 3.4323 -8.4894 1.1021 33 1 4.7866 -7.3631 0.8454 34 1 4.7887 -6.8137 3.2632 35 1 3.4345 -7.9398 3.5204 36 1 7.2013 -7.8815 2.7709 37 1 8.1863 -10.3739 3.1073 38 1 6.1378 -11.9651 3.4789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709509525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:15 Heat of formation + Delta-G solvation = -66.468508 kcal Electronic energy + Delta-G solvation = -19208.451472 eV Core-core repulsion = 16050.751069 eV Total energy + Delta-G solvation = -3157.700403 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.48109 -40.91910 -37.28021 -36.54381 -34.82481 -34.03541 -33.01973 -31.67001 -29.28309 -27.86409 -25.82917 -24.00878 -22.67396 -22.35904 -21.54557 -20.95370 -18.94026 -18.27959 -17.92816 -17.42096 -16.76265 -16.57213 -16.44450 -15.95351 -15.58864 -15.40345 -15.00819 -14.57176 -14.53607 -13.95485 -13.73867 -13.54480 -13.44545 -13.35720 -13.12890 -12.94298 -12.68096 -12.50369 -12.29926 -11.78986 -11.70935 -11.28833 -10.86089 -10.76706 -10.54988 -10.14992 -9.63864 -9.39628 -8.20505 -6.30650 0.76826 1.40673 1.41282 1.51749 1.60933 1.68648 1.95005 2.32823 2.41254 3.13384 3.70057 3.76912 3.86201 3.96206 4.01045 4.15250 4.15586 4.27254 4.30765 4.46528 4.68920 4.74601 4.84838 4.91777 4.95860 5.06603 5.11216 5.23756 5.39085 5.48562 5.61351 5.67754 5.82404 6.08441 6.20993 6.22653 6.48340 6.53257 6.85286 7.23066 7.38522 8.90279 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.003101 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.973119 B = 9027.791183 C = 9722.661821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.121 4.121 11 C 0.081 3.919 12 H 0.113 0.887 13 N -0.832 5.832 14 C 0.526 3.474 15 O -0.574 6.574 16 N -0.717 5.717 17 C 0.129 3.871 18 C -0.041 4.041 19 C -0.028 4.028 20 C -0.217 4.217 21 C -0.230 4.230 22 C -0.043 4.043 23 O -0.194 6.194 24 H 0.264 0.736 25 H 0.001 0.999 26 H 0.004 0.996 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.353 0.647 30 H 0.343 0.657 31 H 0.418 0.582 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.941 -18.008 9.411 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.034 4.034 12 H 0.131 0.869 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.453 6.453 16 N -0.371 5.371 17 C 0.005 3.995 18 C -0.078 4.078 19 C -0.078 4.078 20 C -0.236 4.236 21 C -0.249 4.249 22 C -0.110 4.110 23 O -0.090 6.090 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.022 0.978 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.255 0.745 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.176 0.824 37 H 0.184 0.816 38 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 10.507 -19.170 9.037 23.655 hybrid contribution 0.745 2.123 -0.123 2.253 sum 11.251 -17.047 8.915 22.286 Atomic orbital electron populations 1.70064 1.07500 1.27740 1.51436 1.25867 0.95722 1.02980 0.94808 0.85545 0.78804 0.78998 0.78295 1.20238 1.20731 1.18847 1.21635 0.93394 0.92457 1.50717 0.92630 1.18977 0.94068 0.91994 0.95773 1.22134 0.98774 0.93569 1.01565 1.21432 0.94781 0.91220 0.96011 0.86908 1.58759 1.18468 1.55691 1.03433 1.20766 0.80869 0.84109 0.82969 1.90628 1.61375 1.54688 1.38607 1.45795 1.46423 1.35120 1.09720 1.21224 0.92352 0.89217 0.96696 1.20238 0.98266 0.93866 0.95404 1.22360 0.95295 0.83693 1.06446 1.21974 0.93833 0.99973 1.07839 1.22201 1.01460 0.93045 1.08216 1.24783 0.82330 0.98913 1.04999 1.84019 1.36130 1.18689 1.70197 0.92759 0.98071 0.97757 0.91141 0.93841 0.83200 0.84385 0.74507 0.92650 0.92184 0.86082 0.87855 0.82416 0.81610 0.74851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.03 13.29 21.45 0.28 -53.74 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -29.47 9.11 25.60 0.23 -29.24 16 8 H 0.06 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.03 1.40 4.74 29.85 0.14 1.54 16 10 C -0.12 -4.56 4.78 30.59 0.15 -4.42 16 11 C 0.08 2.64 3.21 44.17 0.14 2.78 16 12 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 13 N -0.83 -28.69 8.94 -171.80 -1.54 -30.22 16 14 C 0.53 16.80 7.08 87.66 0.62 17.42 16 15 O -0.57 -22.60 16.25 -3.01 -0.05 -22.65 16 16 N -0.72 -16.55 5.56 -463.05 -2.57 -19.12 16 17 C 0.13 2.75 5.66 86.38 0.49 3.23 16 18 C -0.04 -0.61 5.86 29.85 0.17 -0.43 16 19 C -0.03 -0.52 6.58 24.83 0.16 -0.36 16 20 C -0.22 -3.89 10.81 22.19 0.24 -3.65 16 21 C -0.23 -3.61 10.91 22.19 0.24 -3.37 16 22 C -0.04 -0.64 12.09 66.97 0.81 0.17 16 23 O -0.19 -3.84 10.65 -2.53 -0.03 -3.87 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 26 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.35 12.27 7.55 -89.69 -0.68 11.60 16 30 H 0.34 12.15 8.58 -89.69 -0.77 11.38 16 31 H 0.42 7.17 8.47 -92.71 -0.79 6.38 16 32 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.24 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -70.11 328.64 0.84 -69.27 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -1.15 Total: 30.95 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 3.86 Total: -15.61 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -3.82 Total: -103.09 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.08 Total: -26.51 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -70.11 0.84 -69.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709509525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.801 kcal (2) G-P(sol) polarization free energy of solvation -70.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds