Wall clock time and date at job start Mon Mar 30 2020 04:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.88871 * 59.29871 * 9 7 2 11 11 C 1.55160 * 111.00293 * 295.42118 * 9 7 2 12 12 C 1.54374 * 102.92072 * 206.45411 * 11 9 7 13 13 N 1.47019 * 107.28686 * 22.13510 * 12 11 9 14 14 C 1.34782 * 125.64761 * 181.05839 * 13 12 11 15 15 O 1.21274 * 119.99840 * 180.02562 * 14 13 12 16 16 C 1.50697 * 119.99926 * 0.04463 * 14 13 12 17 17 H 1.09007 * 109.29846 * 319.99895 * 16 14 13 18 18 C 1.52917 * 109.30076 * 79.58343 * 16 14 13 19 19 C 1.53273 * 108.71071 * 171.26371 * 18 16 14 20 20 C 1.53066 * 108.24641 * 292.18107 * 19 18 16 21 21 C 1.50181 * 109.89379 * 48.96698 * 20 19 18 22 22 O 1.21279 * 118.24633 * 162.43989 * 21 20 19 23 23 N 1.33352 * 123.50292 * 342.42562 * 21 20 19 24 24 C 1.47423 * 108.70479 * 1.09459 * 13 12 11 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.71856 * 324.78082 * 11 9 7 27 27 H 1.08994 * 110.72158 * 88.05872 * 11 9 7 28 28 H 1.08998 * 109.84513 * 262.73074 * 12 11 9 29 29 H 1.08993 * 110.03267 * 141.64805 * 12 11 9 30 30 H 1.08998 * 109.60432 * 290.81866 * 18 16 14 31 31 H 1.08994 * 109.60677 * 51.31109 * 18 16 14 32 32 H 1.09004 * 109.71002 * 172.53742 * 19 18 16 33 33 H 1.08993 * 109.85359 * 51.91155 * 19 18 16 34 34 H 1.09002 * 109.40368 * 288.84203 * 20 19 18 35 35 H 1.09001 * 109.33801 * 169.05314 * 20 19 18 36 36 H 0.97005 * 117.94273 * 182.24451 * 23 21 20 37 37 H 1.08997 * 110.36632 * 217.03107 * 24 13 12 38 38 H 1.09003 * 110.36519 * 94.70865 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6059 -2.5756 -0.8759 11 6 0.4348 -2.6701 1.3080 12 6 0.3282 -4.2036 1.4504 13 7 1.4281 -4.7922 0.6725 14 6 1.6697 -6.1101 0.5267 15 8 2.6106 -6.4839 -0.1409 16 6 0.7703 -7.1192 1.1928 17 1 0.5060 -6.7641 2.1890 18 6 -0.5025 -7.2879 0.3622 19 6 -1.3045 -8.4664 0.9253 20 6 -0.5191 -9.7525 0.6569 21 6 0.9083 -9.5795 1.0907 22 8 1.5830 -10.5740 1.2540 23 7 1.4734 -8.3910 1.3056 24 6 2.2237 -3.7021 0.0791 25 1 -0.4850 0.8401 0.0004 26 1 0.9699 -2.2408 2.1551 27 1 -0.5535 -2.2218 1.2075 28 1 -0.6289 -4.5461 1.0569 29 1 0.4212 -4.4886 2.4983 30 1 -1.1020 -6.3796 0.4231 31 1 -0.2379 -7.4854 -0.6765 32 1 -2.2752 -8.5196 0.4322 33 1 -1.4449 -8.3395 1.9987 34 1 -0.5486 -9.9790 -0.4089 35 1 -0.9698 -10.5737 1.2142 36 1 2.4114 -8.3715 1.5520 37 1 2.5648 -3.9807 -0.9179 38 1 3.0733 -3.4612 0.7181 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709699156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:17 Heat of formation + Delta-G solvation = -83.178327 kcal Electronic energy + Delta-G solvation = -20536.843273 eV Core-core repulsion = 17378.418278 eV Total energy + Delta-G solvation = -3158.424995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.76969 -39.24699 -37.06163 -36.19881 -33.19080 -33.12927 -30.95197 -29.64774 -28.47186 -25.88274 -24.48534 -23.01845 -22.33093 -20.01676 -19.32074 -19.20902 -17.30308 -17.16701 -16.52353 -16.26292 -15.42066 -15.17155 -14.71934 -14.62258 -14.25997 -13.96579 -13.83225 -13.39403 -12.87084 -12.63547 -12.38102 -12.06660 -11.73277 -11.62248 -11.40867 -11.28753 -11.18926 -11.08539 -10.82456 -10.57201 -10.09157 -9.92435 -9.68775 -9.53882 -9.10445 -9.03843 -8.55344 -8.18729 -6.19074 -4.22860 2.52168 2.68072 3.04123 3.24093 3.29118 3.32037 3.47098 4.31879 4.36457 4.40734 4.48261 4.54164 4.81727 4.99015 5.15343 5.17363 5.43526 5.45618 5.48861 5.56999 5.58636 5.72256 5.84309 5.94017 6.07192 6.24814 6.49139 6.64359 6.65345 6.87983 6.96227 7.22457 7.35225 7.60223 7.80081 7.90418 8.10502 8.18402 8.36874 8.78697 9.42826 10.90837 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.047050 B = 0.004057 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.973053 B = 6899.515597 C = 7276.534325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.047 3.953 10 H 0.041 0.959 11 C -0.111 4.111 12 C 0.089 3.911 13 N -0.604 5.604 14 C 0.509 3.491 15 O -0.544 6.544 16 C 0.128 3.872 17 H 0.097 0.903 18 C -0.129 4.129 19 C -0.121 4.121 20 C -0.137 4.137 21 C 0.524 3.476 22 O -0.561 6.561 23 N -0.698 5.698 24 C 0.107 3.893 25 H 0.263 0.737 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.404 0.596 37 H 0.063 0.937 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 -11.511 3.996 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.028 3.972 10 H 0.059 0.941 11 C -0.150 4.150 12 C -0.033 4.033 13 N -0.337 5.337 14 C 0.295 3.705 15 O -0.422 6.422 16 C 0.019 3.981 17 H 0.115 0.885 18 C -0.168 4.168 19 C -0.158 4.158 20 C -0.177 4.177 21 C 0.311 3.689 22 O -0.440 6.440 23 N -0.350 5.350 24 C -0.014 4.014 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.632 -12.179 3.659 13.908 hybrid contribution 0.747 1.178 0.141 1.402 sum -4.885 -11.001 3.800 12.622 Atomic orbital electron populations 1.69923 1.05933 1.26999 1.49729 1.24938 0.94883 0.99166 0.94575 0.86607 0.79591 0.82763 0.78790 1.21241 1.20164 1.20148 1.20904 0.92987 0.89786 1.51976 0.92230 1.19831 0.92443 0.91048 0.93892 0.94094 1.22654 1.02860 0.88637 1.00830 1.22403 0.88880 0.97939 0.94089 1.48745 1.30378 1.04681 1.49870 1.20258 0.85789 0.82369 0.82077 1.90711 1.31264 1.79212 1.41041 1.20883 0.92662 0.83876 1.00659 0.88493 1.21861 0.94131 1.00668 1.00091 1.21659 0.99021 0.92940 1.02206 1.21689 0.91699 1.00066 1.04198 1.20147 0.90170 0.82362 0.76207 1.90754 1.63916 1.36736 1.52566 1.45261 1.15284 1.04664 1.69802 1.22665 0.95316 0.86239 0.97207 0.92745 0.91984 0.89860 0.92214 0.92607 0.88662 0.90088 0.89805 0.90673 0.88051 0.88035 0.75932 0.91899 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 12.36 55.43 0.69 -22.69 16 2 C 0.07 1.72 5.35 -17.82 -0.10 1.62 16 3 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -13.09 8.52 -34.44 -0.29 -13.38 16 8 H 0.06 1.50 7.78 -52.49 -0.41 1.09 16 9 C 0.05 1.05 2.90 -89.63 -0.26 0.79 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.11 -2.18 5.78 -24.87 -0.14 -2.32 16 12 C 0.09 1.35 6.20 -3.04 -0.02 1.33 16 13 N -0.60 -10.33 3.33 -170.50 -0.57 -10.90 16 14 C 0.51 8.36 7.00 -10.98 -0.08 8.28 16 15 O -0.54 -10.98 16.64 5.56 0.09 -10.89 16 16 C 0.13 1.54 2.89 -69.53 -0.20 1.34 16 17 H 0.10 0.98 7.50 -51.93 -0.39 0.59 16 18 C -0.13 -1.26 5.23 -26.63 -0.14 -1.40 16 19 C -0.12 -0.89 6.04 -26.56 -0.16 -1.05 16 20 C -0.14 -1.24 6.02 -28.10 -0.17 -1.41 16 21 C 0.52 6.99 7.71 -11.87 -0.09 6.90 16 22 O -0.56 -9.68 17.78 5.56 0.10 -9.58 16 23 N -0.70 -9.16 4.79 -55.99 -0.27 -9.43 16 24 C 0.11 2.15 6.35 -2.53 -0.02 2.14 16 25 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 26 H 0.06 1.26 8.03 -51.93 -0.42 0.84 16 27 H 0.08 1.73 7.69 -51.93 -0.40 1.33 16 28 H 0.06 0.78 6.63 -51.93 -0.34 0.43 16 29 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 30 H 0.09 0.84 6.61 -51.93 -0.34 0.50 16 31 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.40 5.68 8.45 -40.82 -0.34 5.33 16 37 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 38 H 0.06 1.26 8.03 -51.93 -0.42 0.85 16 LS Contribution 309.56 15.07 4.66 4.66 Total: -1.00 -30.49 309.56 -7.54 -38.03 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.56 Total: 2.95 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.67 Total: 2.85 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.15 Total: -43.02 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.19 Total: -20.47 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.49 -7.54 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709699156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.148 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds