Wall clock time and date at job start Mon Mar 30 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.88871 * 59.29871 * 9 7 2 11 11 C 1.55160 * 111.00293 * 295.42118 * 9 7 2 12 12 C 1.54374 * 102.92072 * 206.45411 * 11 9 7 13 13 N 1.47019 * 107.28686 * 22.13510 * 12 11 9 14 14 C 1.34782 * 125.64761 * 181.05839 * 13 12 11 15 15 O 1.21274 * 119.99840 * 180.02562 * 14 13 12 16 16 C 1.50697 * 119.99926 * 0.04463 * 14 13 12 17 17 H 1.09007 * 109.29846 * 319.99895 * 16 14 13 18 18 C 1.52917 * 109.30076 * 79.58343 * 16 14 13 19 19 C 1.53273 * 108.71071 * 171.26371 * 18 16 14 20 20 C 1.53066 * 108.24641 * 292.18107 * 19 18 16 21 21 C 1.50181 * 109.89379 * 48.96698 * 20 19 18 22 22 O 1.21279 * 118.24633 * 162.43989 * 21 20 19 23 23 N 1.33352 * 123.50292 * 342.42562 * 21 20 19 24 24 C 1.47423 * 108.70479 * 1.09459 * 13 12 11 25 25 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.71856 * 324.78082 * 11 9 7 27 27 H 1.08994 * 110.72158 * 88.05872 * 11 9 7 28 28 H 1.08998 * 109.84513 * 262.73074 * 12 11 9 29 29 H 1.08993 * 110.03267 * 141.64805 * 12 11 9 30 30 H 1.08998 * 109.60432 * 290.81866 * 18 16 14 31 31 H 1.08994 * 109.60677 * 51.31109 * 18 16 14 32 32 H 1.09004 * 109.71002 * 172.53742 * 19 18 16 33 33 H 1.08993 * 109.85359 * 51.91155 * 19 18 16 34 34 H 1.09002 * 109.40368 * 288.84203 * 20 19 18 35 35 H 1.09001 * 109.33801 * 169.05314 * 20 19 18 36 36 H 0.97005 * 117.94273 * 182.24451 * 23 21 20 37 37 H 1.08997 * 110.36632 * 217.03107 * 24 13 12 38 38 H 1.09003 * 110.36519 * 94.70865 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6059 -2.5756 -0.8759 11 6 0.4348 -2.6701 1.3080 12 6 0.3282 -4.2036 1.4504 13 7 1.4281 -4.7922 0.6725 14 6 1.6697 -6.1101 0.5267 15 8 2.6106 -6.4839 -0.1409 16 6 0.7703 -7.1192 1.1928 17 1 0.5060 -6.7641 2.1890 18 6 -0.5025 -7.2879 0.3622 19 6 -1.3045 -8.4664 0.9253 20 6 -0.5191 -9.7525 0.6569 21 6 0.9083 -9.5795 1.0907 22 8 1.5830 -10.5740 1.2540 23 7 1.4734 -8.3910 1.3056 24 6 2.2237 -3.7021 0.0791 25 1 -0.4850 0.8401 0.0004 26 1 0.9699 -2.2408 2.1551 27 1 -0.5535 -2.2218 1.2075 28 1 -0.6289 -4.5461 1.0569 29 1 0.4212 -4.4886 2.4983 30 1 -1.1020 -6.3796 0.4231 31 1 -0.2379 -7.4854 -0.6765 32 1 -2.2752 -8.5196 0.4322 33 1 -1.4449 -8.3395 1.9987 34 1 -0.5486 -9.9790 -0.4089 35 1 -0.9698 -10.5737 1.2142 36 1 2.4114 -8.3715 1.5520 37 1 2.5648 -3.9807 -0.9179 38 1 3.0733 -3.4612 0.7181 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709699156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:16 Heat of formation + Delta-G solvation = -104.379435 kcal Electronic energy + Delta-G solvation = -20537.762622 eV Core-core repulsion = 17378.418278 eV Total energy + Delta-G solvation = -3159.344344 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.86702 -40.52474 -38.51796 -37.28996 -34.98701 -33.97814 -32.47544 -30.81100 -29.96493 -27.25801 -25.87859 -23.92586 -23.65326 -21.67588 -20.57100 -20.13582 -18.71790 -18.36287 -18.07389 -17.33773 -16.76113 -16.46021 -16.38743 -15.88505 -15.18793 -15.13853 -14.67329 -14.58400 -14.32118 -14.20298 -13.70272 -13.40811 -13.04999 -12.98400 -12.87571 -12.62786 -12.56661 -12.29513 -11.97953 -11.88252 -11.58739 -11.34269 -11.28227 -10.94038 -10.76719 -10.49095 -10.18979 -9.60897 -8.15437 -6.24267 1.42357 1.45153 1.45963 1.48363 1.53373 1.88683 2.33881 2.45422 3.16896 3.33777 3.55740 3.65057 3.83928 4.01787 4.06145 4.17384 4.34030 4.42474 4.51067 4.53734 4.70526 4.76672 4.80696 4.86155 4.98264 5.07077 5.09621 5.27563 5.30453 5.36075 5.59140 5.60390 5.81219 5.89349 6.23400 6.28602 6.57592 6.81241 6.99892 7.11048 7.43604 8.93520 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.047050 B = 0.004057 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.973053 B = 6899.515597 C = 7276.534325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.026 3.974 3 Si 0.950 3.050 4 H -0.283 1.283 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.040 3.960 10 H 0.014 0.986 11 C -0.103 4.103 12 C 0.097 3.903 13 N -0.605 5.605 14 C 0.507 3.493 15 O -0.589 6.589 16 C 0.138 3.862 17 H 0.131 0.869 18 C -0.130 4.130 19 C -0.109 4.109 20 C -0.133 4.133 21 C 0.518 3.482 22 O -0.609 6.609 23 N -0.701 5.701 24 C 0.117 3.883 25 H 0.264 0.736 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.395 0.605 37 H 0.045 0.955 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.009 -12.041 5.196 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.776 3.224 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.070 0.930 9 C 0.021 3.979 10 H 0.032 0.968 11 C -0.142 4.142 12 C -0.024 4.024 13 N -0.337 5.337 14 C 0.296 3.704 15 O -0.470 6.470 16 C 0.029 3.971 17 H 0.148 0.852 18 C -0.168 4.168 19 C -0.146 4.146 20 C -0.172 4.172 21 C 0.307 3.693 22 O -0.491 6.491 23 N -0.351 5.351 24 C -0.006 4.006 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.230 0.770 37 H 0.064 0.936 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.585 -12.694 4.872 15.569 hybrid contribution 1.403 1.362 -0.284 1.975 sum -6.182 -11.332 4.587 13.700 Atomic orbital electron populations 1.70007 1.06838 1.27583 1.50357 1.25571 0.95650 1.01845 0.94408 0.85736 0.78513 0.79460 0.78688 1.20796 1.19657 1.20259 1.21233 0.92975 0.91466 1.51987 0.93022 1.19720 0.92798 0.90908 0.94452 0.96806 1.22413 1.01118 0.92212 0.98437 1.22456 0.89450 0.94323 0.96151 1.48735 1.30498 1.04526 1.49937 1.21113 0.85635 0.82416 0.81285 1.90693 1.33450 1.79803 1.43067 1.21055 0.92061 0.81846 1.02119 0.85198 1.21957 0.93219 1.02741 0.98901 1.21670 0.99207 0.90258 1.03477 1.21770 0.88785 1.01917 1.04719 1.21008 0.91743 0.81494 0.75030 1.90729 1.65500 1.38190 1.54677 1.45420 1.15103 1.05306 1.69256 1.22285 0.95031 0.86760 0.96503 0.92734 0.93133 0.91209 0.89020 0.88893 0.86968 0.91660 0.86984 0.88959 0.87307 0.86336 0.77022 0.93641 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.11 12.36 21.45 0.27 -47.84 16 2 C 0.03 1.32 5.35 84.66 0.45 1.77 16 3 Si 0.95 41.12 29.54 68.60 2.03 43.15 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -27.72 8.52 25.60 0.22 -27.51 16 8 H 0.05 2.66 7.78 -2.91 -0.02 2.64 16 9 C 0.04 1.84 2.90 -10.15 -0.03 1.81 16 10 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 11 C -0.10 -3.95 5.78 31.80 0.18 -3.76 16 12 C 0.10 2.64 6.20 86.75 0.54 3.18 16 13 N -0.61 -19.85 3.33 -811.73 -2.70 -22.55 16 14 C 0.51 16.01 7.00 87.66 0.61 16.62 16 15 O -0.59 -24.00 16.64 -3.01 -0.05 -24.05 16 16 C 0.14 2.90 2.89 44.36 0.13 3.03 16 17 H 0.13 1.98 7.50 -2.38 -0.02 1.96 16 18 C -0.13 -2.04 5.23 30.66 0.16 -1.88 16 19 C -0.11 -1.07 6.04 30.71 0.19 -0.89 16 20 C -0.13 -1.98 6.02 29.71 0.18 -1.80 16 21 C 0.52 13.07 7.71 87.72 0.68 13.75 16 22 O -0.61 -20.91 17.78 -3.03 -0.05 -20.96 16 23 N -0.70 -17.41 4.79 -450.23 -2.16 -19.56 16 24 C 0.12 4.78 6.35 86.85 0.55 5.34 16 25 H 0.26 13.35 8.31 -92.70 -0.77 12.58 16 26 H 0.05 2.02 8.03 -2.39 -0.02 2.00 16 27 H 0.07 2.85 7.69 -2.39 -0.02 2.83 16 28 H 0.09 1.96 6.63 -2.39 -0.02 1.94 16 29 H 0.09 1.92 7.92 -2.39 -0.02 1.90 16 30 H 0.11 1.43 6.61 -2.39 -0.02 1.41 16 31 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 32 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.09 0.68 8.13 -2.39 -0.02 0.66 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.39 11.01 8.45 -92.70 -0.78 10.23 16 37 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 38 H 0.05 2.28 8.03 -2.39 -0.02 2.26 16 Total: -1.00 -69.13 309.56 1.47 -67.66 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.28 Total: 14.49 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 3.86 Total: 9.66 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -4.59 Total: -89.95 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.10 Total: -45.01 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -69.13 1.47 -67.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709699156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.720 kcal (2) G-P(sol) polarization free energy of solvation -69.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds