Wall clock time and date at job start Mon Mar 30 2020 04:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48497 * 109.46815 * 269.99704 * 3 2 1 5 5 H 1.48497 * 109.47095 * 29.99809 * 3 2 1 6 6 H 1.48504 * 109.47052 * 150.00172 * 3 2 1 7 7 C 1.37883 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00416 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99643 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99832 * 90.00302 * 10 9 7 12 12 O 1.21283 * 120.00194 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99885 * 180.02562 * 11 10 9 14 14 H 1.08992 * 109.29895 * 40.41197 * 13 11 10 15 15 C 1.52980 * 109.13250 * 280.96524 * 13 11 10 16 16 C 1.53348 * 108.64659 * 189.08279 * 15 13 11 17 17 C 1.53069 * 108.45717 * 67.49790 * 16 15 13 18 18 C 1.50185 * 109.88932 * 311.07783 * 17 16 15 19 19 O 1.21283 * 118.24499 * 197.55628 * 18 17 16 20 20 N 1.33351 * 123.50886 * 17.58626 * 18 17 16 21 21 C 1.46496 * 119.99933 * 269.99973 * 10 9 7 22 22 C 1.52997 * 117.50243 * 8.62300 * 21 10 9 23 23 C 1.52997 * 117.50132 * 299.99860 * 21 10 9 24 24 H 0.96997 * 119.99913 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47628 * 60.00188 * 9 7 2 26 26 H 1.09002 * 109.47478 * 300.00209 * 9 7 2 27 27 H 1.08996 * 109.65742 * 69.30911 * 15 13 11 28 28 H 1.08995 * 109.56745 * 308.80500 * 15 13 11 29 29 H 1.09002 * 109.67626 * 307.74280 * 16 15 13 30 30 H 1.09004 * 109.67030 * 187.24585 * 16 15 13 31 31 H 1.08995 * 109.40030 * 71.20205 * 17 16 15 32 32 H 1.08996 * 109.40535 * 190.95280 * 17 16 15 33 33 H 0.96999 * 117.95017 * 177.77348 * 20 18 17 34 34 H 1.09003 * 115.54826 * 154.32778 * 21 10 9 35 35 H 1.09004 * 117.49738 * 0.02562 * 22 21 10 36 36 H 1.08998 * 117.50368 * 145.01969 * 22 21 10 37 37 H 1.08999 * 117.50321 * 214.98165 * 23 21 10 38 38 H 1.09010 * 117.49584 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2249 -3.2114 -1.1645 12 8 4.0228 -2.6405 -2.2153 13 6 4.7267 -4.6324 -1.1633 14 1 4.2173 -5.1937 -0.3801 15 6 6.2314 -4.6326 -0.8874 16 6 6.7710 -6.0503 -1.1128 17 6 6.6667 -6.3770 -2.6046 18 6 5.2906 -6.0440 -3.1056 19 8 4.9301 -6.5279 -4.1576 20 7 4.4442 -5.2441 -2.4559 21 6 4.2435 -3.2651 1.2715 22 6 3.7816 -2.5696 2.5536 23 6 5.2731 -2.6517 2.2226 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6801 0.8911 26 1 3.8752 -0.6804 -0.8888 27 1 6.4152 -4.3310 0.1437 28 1 6.7273 -3.9401 -1.5675 29 1 6.1797 -6.7636 -0.5386 30 1 7.8135 -6.1004 -0.7982 31 1 7.4038 -5.7929 -3.1555 32 1 6.8604 -7.4387 -2.7571 33 1 3.5869 -5.0575 -2.8694 34 1 4.1760 -4.3525 1.2361 35 1 3.2960 -1.5989 2.4526 36 1 3.4100 -3.1992 3.3620 37 1 5.8828 -3.3355 2.8132 38 1 5.7689 -1.7347 1.9040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709705091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:35 Heat of formation + Delta-G solvation = -43.047441 kcal Electronic energy + Delta-G solvation = -20947.544165 eV Core-core repulsion = 17790.859375 eV Total energy + Delta-G solvation = -3156.684789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66029 -39.15238 -37.10350 -36.14135 -33.39860 -32.97645 -32.22127 -30.25978 -28.06051 -25.21364 -22.91286 -22.69011 -22.25241 -21.77340 -19.22512 -18.74483 -17.40384 -17.12689 -16.93362 -16.24951 -15.37852 -15.06249 -14.62114 -14.47498 -14.17306 -14.10093 -13.85462 -13.60197 -13.15885 -12.70244 -12.27112 -11.95685 -11.84953 -11.55689 -11.28991 -11.23148 -11.20797 -11.01382 -10.81402 -10.56773 -10.33158 -10.10653 -9.89596 -9.60573 -9.42216 -8.79153 -8.66319 -7.77392 -6.15686 -4.15182 2.66021 2.89995 3.20816 3.24585 3.28705 3.31959 3.59899 4.12846 4.32059 4.43556 4.47797 4.57018 4.63936 4.83915 4.98123 5.08209 5.15674 5.18920 5.22843 5.30155 5.53055 5.58354 5.62912 5.68205 5.79077 5.93371 5.97262 6.22747 6.48015 6.58514 6.80207 6.83235 7.12433 7.39429 7.50687 8.01744 8.26170 8.37315 8.70274 8.88462 9.43486 10.97461 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.005906 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.920579 B = 4739.506141 C = 5415.936175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.873 3.127 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.076 0.924 9 C 0.214 3.786 10 N -0.558 5.558 11 C 0.501 3.499 12 O -0.525 6.525 13 C 0.124 3.876 14 H 0.096 0.904 15 C -0.127 4.127 16 C -0.121 4.121 17 C -0.136 4.136 18 C 0.522 3.478 19 O -0.562 6.562 20 N -0.696 5.696 21 C 0.069 3.931 22 C -0.171 4.171 23 C -0.202 4.202 24 H 0.265 0.735 25 H 0.033 0.967 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.407 0.593 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.969 -10.261 5.607 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.094 0.906 9 C 0.094 3.906 10 N -0.288 5.288 11 C 0.286 3.714 12 O -0.401 6.401 13 C 0.014 3.986 14 H 0.113 0.887 15 C -0.166 4.166 16 C -0.158 4.158 17 C -0.176 4.176 18 C 0.309 3.691 19 O -0.441 6.441 20 N -0.348 5.348 21 C -0.037 4.037 22 C -0.208 4.208 23 C -0.241 4.241 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.244 0.756 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.710 -10.100 4.582 18.422 hybrid contribution -0.156 1.157 0.039 1.169 sum 14.554 -8.942 4.621 17.696 Atomic orbital electron populations 1.69884 1.06160 1.27050 1.50104 1.24837 0.94736 0.98823 0.94442 0.86910 0.80147 0.84033 0.78959 1.19884 1.20950 1.19123 1.21243 0.88822 0.94869 1.51641 0.90627 1.19726 0.96008 0.77391 0.97496 1.47412 1.62763 1.15475 1.03145 1.20360 0.78956 0.87840 0.84244 1.90732 1.51578 1.67183 1.30602 1.20980 0.97951 0.92949 0.86677 0.88652 1.21878 0.92261 0.98215 1.04204 1.21668 1.02485 0.96397 0.95278 1.21669 0.94362 1.04281 0.97281 1.20114 0.87129 0.77916 0.83922 1.90754 1.76873 1.53046 1.23442 1.45278 1.20641 1.47789 1.21123 1.21610 1.04105 0.95412 0.82530 1.23343 0.95989 1.04354 0.97144 1.23447 0.93086 1.03656 1.03924 0.92467 0.94902 0.94497 0.88690 0.90272 0.90790 0.90049 0.88189 0.88147 0.75609 0.86127 0.86499 0.88470 0.88559 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.53 -14.45 9.74 -34.44 -0.34 -14.78 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.21 4.92 3.53 -5.19 -0.02 4.90 16 10 N -0.56 -10.45 2.79 -167.47 -0.47 -10.92 16 11 C 0.50 9.37 6.83 -10.99 -0.07 9.30 16 12 O -0.53 -12.32 15.96 5.56 0.09 -12.23 16 13 C 0.12 1.65 2.74 -69.49 -0.19 1.46 16 14 H 0.10 1.07 6.46 -51.93 -0.34 0.74 16 15 C -0.13 -1.27 5.17 -26.56 -0.14 -1.40 16 16 C -0.12 -0.91 6.03 -26.52 -0.16 -1.07 16 17 C -0.14 -1.32 6.03 -28.10 -0.17 -1.49 16 18 C 0.52 7.63 7.71 -11.87 -0.09 7.54 16 19 O -0.56 -10.50 17.78 5.55 0.10 -10.40 16 20 N -0.70 -10.40 4.78 -55.95 -0.27 -10.67 16 21 C 0.07 0.97 5.08 -67.94 -0.35 0.62 16 22 C -0.17 -2.41 9.72 -26.73 -0.26 -2.67 16 23 C -0.20 -2.36 10.13 -26.73 -0.27 -2.63 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.03 0.72 5.38 -51.93 -0.28 0.44 16 26 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 27 H 0.09 0.79 7.27 -51.93 -0.38 0.41 16 28 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 29 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.41 6.79 8.45 -40.82 -0.34 6.45 16 34 H 0.12 1.32 6.28 -51.93 -0.33 0.99 16 35 H 0.12 2.05 6.29 -51.93 -0.33 1.72 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.20 8.12 -51.92 -0.42 0.78 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -34.85 310.09 -7.24 -42.09 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.31 Total: 5.55 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.15 Total: 1.77 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.04 Total: -47.71 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.19 Total: -22.63 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.85 -7.24 -42.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709705091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.958 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds