Wall clock time and date at job start Mon Mar 30 2020 04:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48497 * 109.46815 * 269.99704 * 3 2 1 5 5 H 1.48497 * 109.47095 * 29.99809 * 3 2 1 6 6 H 1.48504 * 109.47052 * 150.00172 * 3 2 1 7 7 C 1.37883 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00416 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99643 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99832 * 90.00302 * 10 9 7 12 12 O 1.21283 * 120.00194 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99885 * 180.02562 * 11 10 9 14 14 H 1.08992 * 109.29895 * 40.41197 * 13 11 10 15 15 C 1.52980 * 109.13250 * 280.96524 * 13 11 10 16 16 C 1.53348 * 108.64659 * 189.08279 * 15 13 11 17 17 C 1.53069 * 108.45717 * 67.49790 * 16 15 13 18 18 C 1.50185 * 109.88932 * 311.07783 * 17 16 15 19 19 O 1.21283 * 118.24499 * 197.55628 * 18 17 16 20 20 N 1.33351 * 123.50886 * 17.58626 * 18 17 16 21 21 C 1.46496 * 119.99933 * 269.99973 * 10 9 7 22 22 C 1.52997 * 117.50243 * 8.62300 * 21 10 9 23 23 C 1.52997 * 117.50132 * 299.99860 * 21 10 9 24 24 H 0.96997 * 119.99913 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47628 * 60.00188 * 9 7 2 26 26 H 1.09002 * 109.47478 * 300.00209 * 9 7 2 27 27 H 1.08996 * 109.65742 * 69.30911 * 15 13 11 28 28 H 1.08995 * 109.56745 * 308.80500 * 15 13 11 29 29 H 1.09002 * 109.67626 * 307.74280 * 16 15 13 30 30 H 1.09004 * 109.67030 * 187.24585 * 16 15 13 31 31 H 1.08995 * 109.40030 * 71.20205 * 17 16 15 32 32 H 1.08996 * 109.40535 * 190.95280 * 17 16 15 33 33 H 0.96999 * 117.95017 * 177.77348 * 20 18 17 34 34 H 1.09003 * 115.54826 * 154.32778 * 21 10 9 35 35 H 1.09004 * 117.49738 * 0.02562 * 22 21 10 36 36 H 1.08998 * 117.50368 * 145.01969 * 22 21 10 37 37 H 1.08999 * 117.50321 * 214.98165 * 23 21 10 38 38 H 1.09010 * 117.49584 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2249 -3.2114 -1.1645 12 8 4.0228 -2.6405 -2.2153 13 6 4.7267 -4.6324 -1.1633 14 1 4.2173 -5.1937 -0.3801 15 6 6.2314 -4.6326 -0.8874 16 6 6.7710 -6.0503 -1.1128 17 6 6.6667 -6.3770 -2.6046 18 6 5.2906 -6.0440 -3.1056 19 8 4.9301 -6.5279 -4.1576 20 7 4.4442 -5.2441 -2.4559 21 6 4.2435 -3.2651 1.2715 22 6 3.7816 -2.5696 2.5536 23 6 5.2731 -2.6517 2.2226 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6801 0.8911 26 1 3.8752 -0.6804 -0.8888 27 1 6.4152 -4.3310 0.1437 28 1 6.7273 -3.9401 -1.5675 29 1 6.1797 -6.7636 -0.5386 30 1 7.8135 -6.1004 -0.7982 31 1 7.4038 -5.7929 -3.1555 32 1 6.8604 -7.4387 -2.7571 33 1 3.5869 -5.0575 -2.8694 34 1 4.1760 -4.3525 1.2361 35 1 3.2960 -1.5989 2.4526 36 1 3.4100 -3.1992 3.3620 37 1 5.8828 -3.3355 2.8132 38 1 5.7689 -1.7347 1.9040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709705091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:34 Heat of formation + Delta-G solvation = -69.811211 kcal Electronic energy + Delta-G solvation = -20948.704729 eV Core-core repulsion = 17790.859375 eV Total energy + Delta-G solvation = -3157.845353 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.85604 -40.47518 -38.38805 -37.30647 -35.19815 -34.00202 -33.86806 -31.57395 -29.68593 -26.36039 -24.43413 -23.76710 -23.38501 -22.94941 -20.27170 -20.00846 -19.14666 -18.63439 -18.25680 -17.49163 -16.73524 -16.35127 -16.13880 -15.75801 -15.53686 -15.14807 -14.94164 -14.67849 -14.51549 -14.27646 -13.65406 -13.63346 -13.08738 -12.74111 -12.63820 -12.56465 -12.37721 -12.12702 -11.99068 -11.84753 -11.82028 -11.58488 -11.41020 -11.10353 -10.85731 -10.69442 -10.09778 -9.27772 -8.35987 -6.40379 1.28127 1.32736 1.39720 1.49643 1.54743 2.00854 2.27092 2.35975 2.97787 3.07519 3.36946 3.58768 3.70889 3.82333 3.92935 4.00885 4.12833 4.22553 4.31547 4.57530 4.68362 4.79911 4.84534 4.88245 4.94056 4.99550 5.00269 5.11777 5.26051 5.33007 5.41296 5.44050 5.52780 5.57187 6.19514 6.29095 6.59153 6.62040 7.08840 7.17072 7.29735 8.80841 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.005906 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.920579 B = 4739.506141 C = 5415.936175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.526 4.526 8 H 0.029 0.971 9 C 0.225 3.775 10 N -0.564 5.564 11 C 0.491 3.509 12 O -0.588 6.588 13 C 0.134 3.866 14 H 0.125 0.875 15 C -0.124 4.124 16 C -0.108 4.108 17 C -0.131 4.131 18 C 0.515 3.485 19 O -0.613 6.613 20 N -0.704 5.704 21 C 0.047 3.953 22 C -0.192 4.192 23 C -0.163 4.163 24 H 0.268 0.732 25 H 0.052 0.948 26 H 0.014 0.986 27 H 0.123 0.877 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.390 0.610 34 H 0.159 0.841 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.144 0.856 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.651 -11.443 8.145 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.763 3.237 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.160 1.160 7 C -0.565 4.565 8 H 0.048 0.952 9 C 0.103 3.897 10 N -0.292 5.292 11 C 0.279 3.721 12 O -0.469 6.469 13 C 0.025 3.975 14 H 0.143 0.857 15 C -0.162 4.162 16 C -0.145 4.145 17 C -0.170 4.170 18 C 0.304 3.696 19 O -0.496 6.496 20 N -0.353 5.353 21 C -0.057 4.057 22 C -0.230 4.230 23 C -0.201 4.201 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.141 0.859 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.224 0.776 34 H 0.176 0.824 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.162 0.838 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.440 -11.311 7.201 22.800 hybrid contribution -1.400 1.481 -0.753 2.173 sum 17.040 -9.831 6.448 20.702 Atomic orbital electron populations 1.70040 1.08142 1.28208 1.52004 1.25784 0.95580 1.03054 0.94095 0.85828 0.80057 0.78943 0.78837 1.20581 1.19982 1.15974 1.21443 0.91287 0.93072 1.50666 0.95214 1.19299 0.92875 0.80576 0.96964 1.47435 1.62139 1.14215 1.05433 1.21419 0.77755 0.89773 0.83181 1.90694 1.54301 1.69059 1.32800 1.21175 1.00895 0.88905 0.86477 0.85734 1.21988 0.88826 0.99918 1.05424 1.21697 1.04858 0.94610 0.93354 1.21771 0.90511 1.05545 0.99206 1.21156 0.88588 0.76730 0.83080 1.90723 1.78113 1.55026 1.25738 1.45529 1.20154 1.47750 1.21873 1.22177 1.06308 0.96956 0.80249 1.23341 0.98544 1.02932 0.98187 1.23532 0.91632 1.03563 1.01399 0.92338 0.93034 0.96781 0.85890 0.91798 0.89079 0.86373 0.87237 0.86339 0.77575 0.82403 0.90698 0.86020 0.83790 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.24 13.96 21.45 0.30 -58.94 16 2 C 0.01 0.76 5.47 84.66 0.46 1.22 16 3 Si 0.94 43.91 27.47 68.60 1.88 45.80 16 4 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 7 C -0.53 -30.11 9.74 25.60 0.25 -29.86 16 8 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 9 C 0.23 10.49 3.53 85.63 0.30 10.79 16 10 N -0.56 -20.83 2.79 -802.15 -2.24 -23.07 16 11 C 0.49 18.45 6.83 87.66 0.60 19.05 16 12 O -0.59 -28.94 15.96 -3.04 -0.05 -28.99 16 13 C 0.13 3.31 2.74 44.38 0.12 3.43 16 14 H 0.13 2.37 6.46 -2.39 -0.02 2.35 16 15 C -0.12 -1.94 5.17 30.70 0.16 -1.78 16 16 C -0.11 -1.04 6.03 30.73 0.19 -0.85 16 17 C -0.13 -2.12 6.03 29.71 0.18 -1.94 16 18 C 0.51 14.73 7.71 87.72 0.68 15.40 16 19 O -0.61 -23.42 17.78 -3.04 -0.05 -23.47 16 20 N -0.70 -21.02 4.78 -450.12 -2.15 -23.17 16 21 C 0.05 1.16 5.08 44.99 0.23 1.39 16 22 C -0.19 -4.98 9.72 30.59 0.30 -4.68 16 23 C -0.16 -3.02 10.13 30.59 0.31 -2.71 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.05 2.21 5.38 -2.39 -0.01 2.20 16 26 H 0.01 0.72 6.85 -2.39 -0.02 0.71 16 27 H 0.12 1.29 7.27 -2.39 -0.02 1.27 16 28 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 29 H 0.09 0.66 8.13 -2.39 -0.02 0.64 16 30 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.39 13.79 8.45 -92.71 -0.78 13.01 16 34 H 0.16 2.68 6.28 -2.39 -0.01 2.67 16 35 H 0.07 2.61 6.29 -2.38 -0.02 2.59 16 36 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.80 8.12 -2.38 -0.02 1.78 16 Total: -1.00 -84.87 310.09 1.70 -83.17 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.24 Total: 19.23 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 3.77 Total: 9.45 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -4.10 Total: -105.18 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.10 Total: -52.47 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.80 kcal Total: -84.87 1.70 -83.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709705091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.360 kcal (2) G-P(sol) polarization free energy of solvation -84.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds