Wall clock time and date at job start Mon Mar 30 2020 04:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99916 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00097 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00090 * 3 2 1 7 7 C 1.39585 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00064 * 359.97438 * 7 2 1 9 9 N 1.36125 * 119.99569 * 179.97438 * 7 2 1 10 10 C 1.34774 * 119.99619 * 179.97438 * 9 7 2 11 11 O 1.21504 * 120.00280 * 0.02562 * 10 9 7 12 12 C 1.48837 * 119.99840 * 179.97438 * 10 9 7 13 13 O 1.21434 * 120.00049 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99840 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00002 * 180.02562 * 14 12 10 16 16 H 1.09000 * 113.19330 * 22.32707 * 15 14 12 17 17 C 1.55704 * 114.08882 * 249.41519 * 15 14 12 18 18 C 1.50301 * 84.16340 * 209.75880 * 17 15 14 19 19 H 1.08998 * 112.30268 * 282.69852 * 18 17 15 20 20 C 1.52353 * 123.94190 * 140.26538 * 18 17 15 21 21 C 1.54262 * 104.91874 * 199.12373 * 20 18 17 22 22 C 1.52339 * 112.38074 * 57.50177 * 21 20 18 23 23 C 1.54066 * 112.60386 * 306.78488 * 22 21 20 24 24 C 1.50247 * 114.08612 * 155.00302 * 15 14 12 25 25 H 1.08998 * 112.67291 * 36.89219 * 24 15 14 26 26 H 0.97004 * 119.99929 * 359.97438 * 1 2 3 27 27 H 0.96993 * 120.00310 * 0.02562 * 9 7 2 28 28 H 0.97001 * 120.00361 * 0.02562 * 14 12 10 29 29 H 1.08997 * 114.07811 * 323.56547 * 17 15 14 30 30 H 1.09005 * 114.07401 * 95.95778 * 17 15 14 31 31 H 1.08998 * 110.21635 * 80.49033 * 20 18 17 32 32 H 1.09003 * 110.97803 * 318.14767 * 20 18 17 33 33 H 1.09003 * 108.89850 * 296.76089 * 21 20 18 34 34 H 1.08994 * 108.82604 * 178.19760 * 21 20 18 35 35 H 1.09004 * 108.85752 * 185.97369 * 22 21 20 36 36 H 1.09006 * 108.85356 * 67.58818 * 22 21 20 37 37 H 1.08998 * 110.12212 * 296.88910 * 23 22 21 38 38 H 1.08997 * 110.22711 * 175.22412 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 3.5417 1.4402 0.7000 6 1 1.4416 2.6527 0.7000 7 6 2.0080 -1.2089 -0.0005 8 1 1.4680 -2.1441 -0.0005 9 7 3.3693 -1.2088 -0.0011 10 6 4.0431 -2.3760 -0.0011 11 8 3.4356 -3.4283 -0.0011 12 6 5.5315 -2.3760 -0.0022 13 8 6.1387 -1.3243 -0.0027 14 7 6.2053 -3.5432 -0.0017 15 6 7.6703 -3.5432 -0.0023 16 1 8.0998 -2.6162 0.3776 17 6 8.3053 -4.0439 -1.3329 18 6 9.4282 -4.5028 -0.4455 19 1 10.0752 -3.6810 -0.1387 20 6 10.1704 -5.8211 -0.6255 21 6 10.8485 -6.0841 0.7349 22 6 9.8476 -6.1317 1.8823 23 6 8.9475 -4.8824 1.9352 24 6 8.2837 -4.7860 0.5780 25 1 7.7207 -5.6865 0.3324 26 1 -0.4850 0.8401 0.0004 27 1 3.8542 -0.3688 -0.0007 28 1 5.7203 -4.3833 -0.0009 29 1 7.7557 -4.8551 -1.8103 30 1 8.5808 -3.2456 -2.0221 31 1 10.9222 -5.7261 -1.4090 32 1 9.4786 -6.6289 -0.8640 33 1 11.5703 -5.2907 0.9288 34 1 11.3759 -7.0367 0.6867 35 1 10.3931 -6.2129 2.8225 36 1 9.2187 -7.0143 1.7649 37 1 9.5502 -3.9936 2.1218 38 1 8.1934 -4.9939 2.7143 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712552858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:10 Heat of formation + Delta-G solvation = -48.564219 kcal Electronic energy + Delta-G solvation = -20096.077771 eV Core-core repulsion = 16939.153756 eV Total energy + Delta-G solvation = -3156.924015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11657 -39.29976 -37.26707 -35.31239 -34.31679 -32.66672 -31.82898 -30.92484 -26.69158 -25.99002 -24.48981 -22.54280 -21.15923 -20.64106 -20.27048 -19.31820 -18.86518 -16.91237 -16.16316 -15.40186 -15.17636 -15.04338 -14.78546 -14.66994 -14.13894 -13.65970 -13.51677 -13.00001 -12.81013 -12.74931 -12.54178 -12.37958 -12.11362 -11.87878 -11.51298 -11.34633 -11.27182 -11.15676 -10.78483 -10.71020 -10.54186 -10.24244 -10.08393 -9.76337 -9.57452 -8.75031 -8.41050 -8.39121 -6.58182 -3.99696 2.29730 3.04858 3.08222 3.11102 3.34451 3.96278 3.97542 4.13332 4.46307 4.48399 4.69955 4.74801 4.81231 4.86951 5.10334 5.13755 5.19785 5.26919 5.40812 5.48335 5.49949 5.60755 5.68756 5.76730 5.78551 5.85201 5.88068 5.96966 6.04393 6.08232 6.19452 6.35918 6.73798 7.27138 7.69689 7.93283 8.26289 8.52817 8.75724 9.20224 9.62602 10.51956 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043705 B = 0.003787 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.508100 B = 7392.593292 C = 7556.913196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.052 3.948 3 Si 0.876 3.124 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.271 1.271 7 C -0.309 4.309 8 H 0.127 0.873 9 N -0.527 5.527 10 C 0.403 3.597 11 O -0.579 6.579 12 C 0.515 3.485 13 O -0.552 6.552 14 N -0.701 5.701 15 C 0.138 3.862 16 H 0.119 0.881 17 C -0.138 4.138 18 C -0.125 4.125 19 H 0.094 0.906 20 C -0.100 4.100 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.105 4.105 24 C -0.131 4.131 25 H 0.094 0.906 26 H 0.281 0.719 27 H 0.384 0.616 28 H 0.411 0.589 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.125 -8.590 0.753 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.156 4.156 3 Si 0.701 3.299 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.195 1.195 7 C -0.438 4.438 8 H 0.145 0.855 9 N -0.164 5.164 10 C 0.188 3.812 11 O -0.466 6.466 12 C 0.300 3.700 13 O -0.429 6.429 14 N -0.353 5.353 15 C 0.033 3.967 16 H 0.136 0.864 17 C -0.177 4.177 18 C -0.144 4.144 19 H 0.112 0.888 20 C -0.137 4.137 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.142 4.142 24 C -0.151 4.151 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.218 0.782 28 H 0.247 0.753 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.954 -8.412 0.776 21.669 hybrid contribution 0.302 0.891 0.042 0.942 sum 20.257 -7.521 0.818 21.623 Atomic orbital electron populations 1.69445 1.06117 1.28626 1.44531 1.25233 0.95549 0.98592 0.96215 0.86674 0.80426 0.83036 0.79796 1.18892 1.18431 1.19542 1.19564 0.79166 0.97073 1.48039 0.85519 1.41832 1.07563 1.06959 1.60080 1.18890 0.86540 0.85264 0.90493 1.90620 1.68822 1.30359 1.56767 1.20654 0.89792 0.83766 0.75813 1.90662 1.70909 1.31407 1.49968 1.45681 1.06143 1.09252 1.74193 1.22345 0.79601 0.98671 0.96098 0.86353 1.23136 0.96708 1.01144 0.96722 1.22450 0.95202 0.97941 0.98810 0.88830 1.21505 0.99363 0.96168 0.96679 1.21556 0.98047 1.01411 0.94471 1.21489 0.97585 0.98126 0.98107 1.21336 0.98138 0.98129 0.96614 1.22956 0.97226 0.98608 0.96271 0.88741 0.90794 0.78161 0.75292 0.89364 0.91080 0.91948 0.91498 0.92278 0.92314 0.92199 0.92265 0.91642 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.77 13.94 55.53 0.77 -23.00 16 2 C 0.05 1.41 5.51 -17.40 -0.10 1.31 16 3 Si 0.88 19.48 27.74 -169.99 -4.72 14.76 16 4 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.26 -5.61 6.53 56.52 0.37 -5.24 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.31 -8.69 10.16 -15.14 -0.15 -8.85 16 8 H 0.13 3.97 7.36 -52.49 -0.39 3.58 16 9 N -0.53 -13.45 5.06 -11.59 -0.06 -13.51 16 10 C 0.40 9.87 7.82 -11.87 -0.09 9.78 16 11 O -0.58 -15.40 16.03 5.36 0.09 -15.31 16 12 C 0.52 10.69 7.87 -11.87 -0.09 10.60 16 13 O -0.55 -12.17 16.06 5.42 0.09 -12.08 16 14 N -0.70 -11.45 5.38 -57.88 -0.31 -11.76 16 15 C 0.14 1.80 4.07 -71.42 -0.29 1.51 16 16 H 0.12 1.68 7.43 -51.93 -0.39 1.29 16 17 C -0.14 -1.51 7.73 -30.36 -0.23 -1.75 16 18 C -0.13 -1.14 3.10 -94.18 -0.29 -1.44 16 19 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 20 C -0.10 -0.77 6.17 -26.40 -0.16 -0.94 16 21 C -0.12 -0.85 5.77 -26.41 -0.15 -1.00 16 22 C -0.12 -0.90 5.79 -26.51 -0.15 -1.06 16 23 C -0.10 -0.98 6.11 -26.99 -0.16 -1.14 16 24 C -0.13 -1.34 2.83 -94.86 -0.27 -1.61 16 25 H 0.09 0.95 7.99 -51.93 -0.41 0.54 16 26 H 0.28 7.17 8.30 -40.82 -0.34 6.84 16 27 H 0.38 9.21 5.22 -40.82 -0.21 8.99 16 28 H 0.41 6.38 8.20 -40.82 -0.33 6.05 16 29 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 311.61 15.07 4.70 4.70 Total: -1.00 -30.54 311.61 -7.13 -37.68 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -5.53 Total: 13.11 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -2.16 Total: 5.42 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.40 Total: -48.27 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: 0.17 Total: -27.39 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.72 Total: 14.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.54 -7.13 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712552858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.887 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds