Wall clock time and date at job start Mon Mar 30 2020 04:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48501 * 109.46958 * 240.00068 * 3 2 1 5 5 H 1.48503 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47182 * 120.00084 * 3 2 1 7 7 C 1.39576 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00757 * 180.02562 * 7 2 1 9 9 N 1.36120 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00135 * 179.97438 * 9 7 2 11 11 O 1.21499 * 120.00190 * 0.02562 * 10 9 7 12 12 C 1.48838 * 120.00119 * 179.97438 * 10 9 7 13 13 O 1.21441 * 119.99685 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00119 * 179.97438 * 12 10 9 15 15 C 1.46494 * 119.99822 * 180.02562 * 14 12 10 16 16 H 1.08999 * 113.30529 * 22.23128 * 15 14 12 17 17 C 1.55704 * 114.07696 * 249.45265 * 15 14 12 18 18 C 1.50251 * 84.12378 * 282.65454 * 17 15 14 19 19 H 1.09004 * 112.22155 * 76.87944 * 18 17 15 20 20 C 1.51392 * 125.29570 * 218.76090 * 18 17 15 21 21 C 1.54057 * 106.08959 * 159.76627 * 20 18 17 22 22 C 1.52333 * 112.60817 * 303.96842 * 21 20 18 23 23 C 1.54263 * 112.37597 * 53.22162 * 22 21 20 24 24 C 1.50316 * 114.07589 * 155.00214 * 15 14 12 25 25 H 1.08996 * 112.91793 * 190.02680 * 24 15 14 26 26 H 0.96999 * 120.00222 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99953 * 359.97438 * 9 7 2 28 28 H 0.97000 * 119.99912 * 0.02562 * 14 12 10 29 29 H 1.08993 * 114.08383 * 36.44785 * 17 15 14 30 30 H 1.09007 * 114.08190 * 168.86493 * 17 15 14 31 31 H 1.09003 * 110.11633 * 40.62407 * 20 18 17 32 32 H 1.08999 * 110.22212 * 278.96949 * 20 18 17 33 33 H 1.09005 * 108.85579 * 183.16404 * 21 20 18 34 34 H 1.09007 * 108.77535 * 64.72339 * 21 20 18 35 35 H 1.08999 * 108.90249 * 292.46906 * 22 21 20 36 36 H 1.09005 * 108.82747 * 173.90861 * 22 21 20 37 37 H 1.08999 * 110.21960 * 183.86292 * 23 22 21 38 38 H 1.09002 * 110.33488 * 61.94835 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0978 1.6965 -1.2125 5 1 1.2790 2.7465 -0.0006 6 1 3.0978 1.6965 1.2125 7 6 2.0081 -1.2087 0.0005 8 1 3.0881 -1.2087 0.0010 9 7 1.3276 -2.3876 0.0005 10 6 2.0015 -3.5548 0.0005 11 8 3.2165 -3.5548 0.0010 12 6 1.2574 -4.8438 0.0011 13 8 0.0430 -4.8438 0.0011 14 7 1.9313 -6.0110 0.0006 15 6 1.1989 -7.2797 0.0006 16 1 0.1806 -7.1897 -0.3777 17 6 1.3139 -8.0795 1.3315 18 6 2.6750 -8.4477 0.8126 19 1 3.3923 -7.6345 0.9235 20 6 3.3280 -9.8060 0.9564 21 6 4.4207 -9.8713 -0.1276 22 6 3.8730 -9.6222 -1.5270 23 6 3.0683 -8.3091 -1.6176 24 6 1.9692 -8.4325 -0.5799 25 1 1.3550 -9.3200 -0.7316 26 1 -0.4850 0.8400 -0.0004 27 1 0.3576 -2.3876 0.0005 28 1 2.9013 -6.0109 0.0002 29 1 1.3322 -7.4558 2.2251 30 1 0.6239 -8.9202 1.4063 31 1 2.5926 -10.5944 0.7956 32 1 3.7745 -9.9066 1.9456 33 1 4.8846 -10.8574 -0.1013 34 1 5.1790 -9.1199 0.0929 35 1 3.2252 -10.4533 -1.8058 36 1 4.7066 -9.5743 -2.2277 37 1 2.6366 -8.1997 -2.6124 38 1 3.7078 -7.4565 -1.3892 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712552860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:13 Heat of formation + Delta-G solvation = -49.106430 kcal Electronic energy + Delta-G solvation = -20325.900568 eV Core-core repulsion = 17168.953041 eV Total energy + Delta-G solvation = -3156.947527 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23830 -39.06019 -37.08274 -35.18219 -34.27216 -32.38768 -31.36852 -30.80708 -26.62106 -25.90000 -24.48811 -22.91312 -21.43680 -20.54271 -19.90282 -18.88638 -18.33180 -16.95716 -15.92454 -15.32939 -15.01089 -14.80641 -14.74274 -14.49000 -13.96887 -13.90763 -13.58617 -13.43450 -12.82688 -12.65035 -12.36917 -11.91555 -11.82997 -11.76355 -11.35100 -11.23896 -11.16629 -10.93677 -10.63788 -10.58083 -10.43995 -10.34026 -9.98572 -9.71132 -9.38929 -8.67164 -8.27887 -8.22875 -6.67292 -3.99683 2.43451 3.15387 3.17257 3.18208 3.39142 4.05755 4.08215 4.24569 4.55043 4.59187 4.80309 4.90178 4.94431 5.04593 5.19512 5.23237 5.30400 5.38955 5.52119 5.54268 5.62966 5.77174 5.81477 5.86746 5.95835 5.99519 6.06522 6.10000 6.13494 6.20510 6.31642 6.41708 6.86027 7.30540 7.69044 7.88043 8.32815 8.62817 8.95761 9.31408 9.84749 10.47471 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.038562 B = 0.003961 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.932682 B = 7067.420091 C = 7386.071331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.032 3.968 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.112 0.888 9 N -0.498 5.498 10 C 0.393 3.607 11 O -0.599 6.599 12 C 0.516 3.484 13 O -0.544 6.544 14 N -0.694 5.694 15 C 0.138 3.862 16 H 0.103 0.897 17 C -0.138 4.138 18 C -0.131 4.131 19 H 0.089 0.911 20 C -0.101 4.101 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.105 4.105 24 C -0.132 4.132 25 H 0.100 0.900 26 H 0.281 0.719 27 H 0.405 0.595 28 H 0.409 0.591 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -17.050 -0.317 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.175 4.175 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.132 5.132 10 C 0.178 3.822 11 O -0.487 6.487 12 C 0.301 3.699 13 O -0.421 6.421 14 N -0.347 5.347 15 C 0.031 3.969 16 H 0.121 0.879 17 C -0.177 4.177 18 C -0.150 4.150 19 H 0.107 0.893 20 C -0.138 4.138 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.151 4.151 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.240 0.760 28 H 0.247 0.753 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.804 -16.890 -0.334 17.316 hybrid contribution 0.275 0.709 0.027 0.761 sum 4.078 -16.181 -0.307 16.690 Atomic orbital electron populations 1.69473 1.06525 1.29488 1.45157 1.25583 0.95622 1.00470 0.95857 0.85779 0.78879 0.79311 0.79519 1.19367 1.20578 1.19364 1.19837 0.93965 0.81896 1.48026 0.87017 1.41557 1.10497 1.04209 1.56932 1.18937 0.87806 0.84196 0.91291 1.90577 1.12883 1.86616 1.58650 1.20715 0.87525 0.85867 0.75807 1.90684 1.14067 1.88043 1.49307 1.45338 1.10684 1.03836 1.74871 1.21317 0.96895 0.82630 0.96013 0.87930 1.23078 0.96467 0.99939 0.98245 1.22536 0.96377 0.98102 0.97950 0.89250 1.21285 0.97870 0.96328 0.98319 1.21508 0.98127 1.01353 0.94539 1.21518 0.99503 0.97490 0.96666 1.21372 0.96435 0.97642 0.98816 1.22938 0.97418 0.98814 0.95962 0.88233 0.90840 0.75978 0.75339 0.91090 0.89087 0.91886 0.92081 0.92351 0.92152 0.92418 0.92186 0.91768 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.30 13.03 55.53 0.72 -22.57 16 2 C 0.03 0.83 5.51 -17.40 -0.10 0.73 16 3 Si 0.94 20.08 29.56 -169.99 -5.02 15.05 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.31 -8.47 9.67 -15.15 -0.15 -8.62 16 8 H 0.11 3.14 7.15 -52.49 -0.38 2.76 16 9 N -0.50 -13.38 5.25 -11.59 -0.06 -13.44 16 10 C 0.39 9.96 7.82 -11.87 -0.09 9.87 16 11 O -0.60 -16.06 16.03 5.37 0.09 -15.98 16 12 C 0.52 11.28 7.87 -11.87 -0.09 11.19 16 13 O -0.54 -12.81 16.06 5.42 0.09 -12.72 16 14 N -0.69 -11.96 4.90 -58.00 -0.28 -12.25 16 15 C 0.14 1.93 4.49 -71.54 -0.32 1.61 16 16 H 0.10 1.56 7.46 -51.93 -0.39 1.17 16 17 C -0.14 -1.63 7.79 -30.22 -0.24 -1.87 16 18 C -0.13 -1.42 2.96 -94.84 -0.28 -1.70 16 19 H 0.09 1.10 6.60 -51.93 -0.34 0.75 16 20 C -0.10 -0.90 6.12 -26.99 -0.17 -1.07 16 21 C -0.12 -1.02 5.79 -26.52 -0.15 -1.17 16 22 C -0.11 -1.02 5.79 -26.41 -0.15 -1.17 16 23 C -0.11 -1.13 5.93 -26.75 -0.16 -1.29 16 24 C -0.13 -1.45 3.01 -94.52 -0.28 -1.73 16 25 H 0.10 0.96 8.01 -51.93 -0.42 0.54 16 26 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 27 H 0.40 10.96 7.35 -40.82 -0.30 10.66 16 28 H 0.41 6.80 6.06 -40.82 -0.25 6.56 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 31 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.82 7.19 -51.93 -0.37 0.44 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -29.77 310.18 -7.35 -37.13 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -5.38 Total: 15.33 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -2.18 Total: 4.77 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.38 Total: -48.26 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: 0.17 Total: -28.70 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.77 -7.35 -37.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712552860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.978 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds