Wall clock time and date at job start Mon Mar 30 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86806 * 119.99745 * 2 1 4 4 H 1.48501 * 109.46958 * 240.00068 * 3 2 1 5 5 H 1.48503 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47182 * 120.00084 * 3 2 1 7 7 C 1.39576 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00757 * 180.02562 * 7 2 1 9 9 N 1.36120 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00135 * 179.97438 * 9 7 2 11 11 O 1.21499 * 120.00190 * 0.02562 * 10 9 7 12 12 C 1.48838 * 120.00119 * 179.97438 * 10 9 7 13 13 O 1.21441 * 119.99685 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00119 * 179.97438 * 12 10 9 15 15 C 1.46494 * 119.99822 * 180.02562 * 14 12 10 16 16 H 1.08999 * 113.30529 * 22.23128 * 15 14 12 17 17 C 1.55704 * 114.07696 * 249.45265 * 15 14 12 18 18 C 1.50251 * 84.12378 * 282.65454 * 17 15 14 19 19 H 1.09004 * 112.22155 * 76.87944 * 18 17 15 20 20 C 1.51392 * 125.29570 * 218.76090 * 18 17 15 21 21 C 1.54057 * 106.08959 * 159.76627 * 20 18 17 22 22 C 1.52333 * 112.60817 * 303.96842 * 21 20 18 23 23 C 1.54263 * 112.37597 * 53.22162 * 22 21 20 24 24 C 1.50316 * 114.07589 * 155.00214 * 15 14 12 25 25 H 1.08996 * 112.91793 * 190.02680 * 24 15 14 26 26 H 0.96999 * 120.00222 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99953 * 359.97438 * 9 7 2 28 28 H 0.97000 * 119.99912 * 0.02562 * 14 12 10 29 29 H 1.08993 * 114.08383 * 36.44785 * 17 15 14 30 30 H 1.09007 * 114.08190 * 168.86493 * 17 15 14 31 31 H 1.09003 * 110.11633 * 40.62407 * 20 18 17 32 32 H 1.08999 * 110.22212 * 278.96949 * 20 18 17 33 33 H 1.09005 * 108.85579 * 183.16404 * 21 20 18 34 34 H 1.09007 * 108.77535 * 64.72339 * 21 20 18 35 35 H 1.08999 * 108.90249 * 292.46906 * 22 21 20 36 36 H 1.09005 * 108.82747 * 173.90861 * 22 21 20 37 37 H 1.08999 * 110.21960 * 183.86292 * 23 22 21 38 38 H 1.09002 * 110.33488 * 61.94835 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0978 1.6965 -1.2125 5 1 1.2790 2.7465 -0.0006 6 1 3.0978 1.6965 1.2125 7 6 2.0081 -1.2087 0.0005 8 1 3.0881 -1.2087 0.0010 9 7 1.3276 -2.3876 0.0005 10 6 2.0015 -3.5548 0.0005 11 8 3.2165 -3.5548 0.0010 12 6 1.2574 -4.8438 0.0011 13 8 0.0430 -4.8438 0.0011 14 7 1.9313 -6.0110 0.0006 15 6 1.1989 -7.2797 0.0006 16 1 0.1806 -7.1897 -0.3777 17 6 1.3139 -8.0795 1.3315 18 6 2.6750 -8.4477 0.8126 19 1 3.3923 -7.6345 0.9235 20 6 3.3280 -9.8060 0.9564 21 6 4.4207 -9.8713 -0.1276 22 6 3.8730 -9.6222 -1.5270 23 6 3.0683 -8.3091 -1.6176 24 6 1.9692 -8.4325 -0.5799 25 1 1.3550 -9.3200 -0.7316 26 1 -0.4850 0.8400 -0.0004 27 1 0.3576 -2.3876 0.0005 28 1 2.9013 -6.0109 0.0002 29 1 1.3322 -7.4558 2.2251 30 1 0.6239 -8.9202 1.4063 31 1 2.5926 -10.5944 0.7956 32 1 3.7745 -9.9066 1.9456 33 1 4.8846 -10.8574 -0.1013 34 1 5.1790 -9.1199 0.0929 35 1 3.2252 -10.4533 -1.8058 36 1 4.7066 -9.5743 -2.2277 37 1 2.6366 -8.1997 -2.6124 38 1 3.7078 -7.4565 -1.3892 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712552860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:12 Heat of formation + Delta-G solvation = -68.921845 kcal Electronic energy + Delta-G solvation = -20326.759829 eV Core-core repulsion = 17168.953041 eV Total energy + Delta-G solvation = -3157.806788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.34071 -40.81854 -38.96935 -36.52485 -35.99590 -33.85385 -33.32899 -31.66053 -28.09334 -27.27627 -25.76767 -24.44505 -22.36265 -21.62254 -21.21631 -20.41299 -20.13536 -18.74702 -17.62102 -16.83431 -16.56411 -16.31557 -15.90341 -15.66846 -15.57391 -15.16924 -14.76497 -14.63782 -14.44153 -14.13988 -13.67730 -13.32251 -12.97397 -12.72807 -12.68082 -12.60498 -12.34361 -12.29676 -12.12319 -12.05760 -11.80439 -11.67119 -11.35754 -10.86205 -10.39619 -10.29363 -10.26287 -9.99717 -8.67295 -6.12578 0.56954 1.40347 1.48598 1.53295 1.78797 2.28402 2.34401 3.13299 3.18504 3.23464 3.66099 3.69291 3.84060 4.00293 4.13507 4.13815 4.45383 4.50719 4.56309 4.65146 4.69442 4.81281 4.82739 4.95213 5.04514 5.12982 5.23344 5.24527 5.28977 5.30827 5.36558 5.45531 5.48922 5.62672 5.67593 6.14789 6.36771 6.79377 6.99706 7.25782 7.77778 8.48304 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.038562 B = 0.003961 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.932682 B = 7067.420091 C = 7386.071331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.003 4.003 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.509 5.509 10 C 0.388 3.612 11 O -0.618 6.618 12 C 0.521 3.479 13 O -0.565 6.565 14 N -0.673 5.673 15 C 0.113 3.887 16 H 0.091 0.909 17 C -0.128 4.128 18 C -0.127 4.127 19 H 0.069 0.931 20 C -0.095 4.095 21 C -0.118 4.118 22 C -0.109 4.109 23 C -0.109 4.109 24 C -0.120 4.120 25 H 0.126 0.874 26 H 0.290 0.710 27 H 0.401 0.599 28 H 0.413 0.587 29 H 0.054 0.946 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 -18.563 -0.318 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.117 0.883 9 N -0.142 5.142 10 C 0.173 3.827 11 O -0.508 6.508 12 C 0.305 3.695 13 O -0.444 6.444 14 N -0.326 5.326 15 C 0.008 3.992 16 H 0.109 0.891 17 C -0.166 4.166 18 C -0.145 4.145 19 H 0.087 0.913 20 C -0.133 4.133 21 C -0.155 4.155 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.139 4.139 25 H 0.144 0.856 26 H 0.100 0.900 27 H 0.235 0.765 28 H 0.251 0.749 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.224 -18.451 -0.333 18.931 hybrid contribution 0.142 1.084 0.017 1.093 sum 4.366 -17.367 -0.316 17.910 Atomic orbital electron populations 1.69542 1.07854 1.30958 1.44886 1.26551 0.96501 1.03488 0.94251 0.84747 0.77759 0.74706 0.79665 1.18825 1.19013 1.18826 1.19962 0.93726 0.83077 1.50940 0.88306 1.41649 1.10237 1.04777 1.57574 1.19594 0.87862 0.85233 0.90059 1.90541 1.13816 1.87278 1.59168 1.20085 0.87038 0.85924 0.76495 1.90671 1.14528 1.88244 1.50920 1.45283 1.10903 1.03875 1.72496 1.21719 0.96532 0.81904 0.98997 0.89051 1.23090 0.97776 0.99872 0.95860 1.22447 0.95603 0.98908 0.97565 0.91264 1.21280 0.98132 0.95143 0.98710 1.21521 0.97851 1.01979 0.94191 1.21483 0.99614 0.96537 0.97038 1.21409 0.96388 0.98294 0.98611 1.22925 0.97159 0.97653 0.96149 0.85578 0.90017 0.76461 0.74923 0.92733 0.86164 0.90173 0.91666 0.90632 0.93265 0.90899 0.91785 0.91921 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.41 13.03 21.76 0.28 -48.12 16 2 C 0.00 -0.18 5.51 85.14 0.47 0.29 16 3 Si 1.01 40.90 29.56 68.60 2.03 42.93 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.35 -19.76 9.67 84.35 0.82 -18.94 16 8 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 9 N -0.51 -28.39 5.25 -308.87 -1.62 -30.01 16 10 C 0.39 20.32 7.82 87.08 0.68 21.00 16 11 O -0.62 -34.23 16.03 -3.71 -0.06 -34.29 16 12 C 0.52 23.41 7.87 87.08 0.69 24.09 16 13 O -0.56 -27.22 16.06 -3.53 -0.06 -27.28 16 14 N -0.67 -23.56 4.90 -455.74 -2.23 -25.79 16 15 C 0.11 3.09 4.49 42.65 0.19 3.28 16 16 H 0.09 2.73 7.46 -2.39 -0.02 2.71 16 17 C -0.13 -2.78 7.79 28.34 0.22 -2.56 16 18 C -0.13 -2.52 2.96 -13.53 -0.04 -2.56 16 19 H 0.07 1.66 6.60 -2.38 -0.02 1.65 16 20 C -0.10 -1.41 6.12 30.43 0.19 -1.23 16 21 C -0.12 -1.72 5.79 30.73 0.18 -1.54 16 22 C -0.11 -1.65 5.79 30.80 0.18 -1.47 16 23 C -0.11 -2.19 5.93 30.58 0.18 -2.01 16 24 C -0.12 -2.39 3.01 -13.32 -0.04 -2.43 16 25 H 0.13 1.93 8.01 -2.39 -0.02 1.91 16 26 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 27 H 0.40 22.59 7.35 -92.71 -0.68 21.91 16 28 H 0.41 14.02 6.06 -92.71 -0.56 13.46 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.12 1.96 8.12 -2.38 -0.02 1.94 16 31 H 0.08 0.96 8.06 -2.39 -0.02 0.94 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.93 8.14 -2.38 -0.02 0.92 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.16 7.19 -2.39 -0.02 1.14 16 Total: -1.00 -65.30 310.18 1.89 -63.40 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: -0.16 Total: 43.23 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 3.71 Total: 15.92 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -3.57 Total: -103.92 kcal Atomic # 8 Polarization: -61.45 SS G_CDS: -0.12 Total: -61.57 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -65.30 1.89 -63.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712552860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.519 kcal (2) G-P(sol) polarization free energy of solvation -65.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds