Wall clock time and date at job start Mon Mar 30 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86803 * 119.99714 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99853 * 3 2 1 5 5 H 1.48492 * 109.47096 * 30.00115 * 3 2 1 6 6 H 1.48501 * 109.46810 * 150.00468 * 3 2 1 7 7 C 1.39582 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.36126 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99762 * 180.27850 * 9 7 2 11 11 O 1.21503 * 120.00321 * 359.71737 * 10 9 7 12 12 C 1.48832 * 119.99765 * 179.71995 * 10 9 7 13 13 O 1.21443 * 119.99877 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00135 * 179.97438 * 12 10 9 15 15 C 1.46500 * 120.00431 * 180.02562 * 14 12 10 16 16 H 1.09009 * 112.88477 * 23.64725 * 15 14 12 17 17 C 1.53958 * 113.66512 * 252.17482 * 15 14 12 18 18 C 1.53228 * 86.25540 * 218.96251 * 17 15 14 19 19 H 1.08994 * 111.34613 * 274.74313 * 18 17 15 20 20 C 1.50508 * 115.02752 * 147.07896 * 18 17 15 21 21 C 1.51625 * 114.39751 * 290.52373 * 20 18 17 22 22 C 1.52593 * 111.08066 * 313.10041 * 21 20 18 23 23 C 1.52952 * 109.88209 * 63.11710 * 22 21 20 24 24 C 1.52544 * 87.67250 * 26.88361 * 18 17 15 25 25 H 1.09001 * 113.95622 * 218.48690 * 24 18 17 26 26 H 0.96999 * 120.00097 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99691 * 359.97438 * 9 7 2 28 28 H 0.97000 * 120.00112 * 0.02562 * 14 12 10 29 29 H 1.09000 * 113.75092 * 333.30484 * 17 15 14 30 30 H 1.09003 * 113.75233 * 104.62890 * 17 15 14 31 31 H 1.08997 * 108.49459 * 51.80132 * 20 18 17 32 32 H 1.09002 * 108.48948 * 169.41144 * 20 18 17 33 33 H 1.08998 * 109.15962 * 73.51557 * 21 20 18 34 34 H 1.09005 * 109.15381 * 192.68890 * 21 20 18 35 35 H 1.08999 * 109.58099 * 183.50165 * 22 21 20 36 36 H 1.09004 * 109.58111 * 303.89098 * 22 21 20 37 37 H 1.08996 * 110.86615 * 177.42804 * 23 22 21 38 38 H 1.09000 * 108.13123 * 57.30027 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 1.4415 2.6526 0.7000 6 1 3.5417 1.4402 0.7000 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3877 -0.0016 10 6 2.0015 -3.5548 0.0036 11 8 3.2165 -3.5548 0.0040 12 6 1.2573 -4.8438 0.0087 13 8 0.0429 -4.8438 0.0078 14 7 1.9312 -6.0109 0.0133 15 6 1.1988 -7.2797 0.0178 16 1 0.1903 -7.1884 -0.3857 17 6 1.2632 -8.0257 1.3631 18 6 1.3811 -9.3076 0.5321 19 1 0.4001 -9.6853 0.2441 20 6 2.2220 -10.3921 1.1502 21 6 3.7052 -10.0816 1.2020 22 6 4.2010 -9.5461 -0.1380 23 6 3.5059 -8.2218 -0.4582 24 6 1.9989 -8.4591 -0.5749 25 1 1.6872 -8.7466 -1.5791 26 1 -0.4850 0.8400 -0.0004 27 1 0.3575 -2.3877 -0.0016 28 1 2.9012 -6.0110 0.0137 29 1 2.1540 -7.7986 1.9487 30 1 0.3434 -7.9626 1.9446 31 1 1.8692 -10.5660 2.1668 32 1 2.0824 -11.3077 0.5755 33 1 3.8877 -9.3353 1.9751 34 1 4.2526 -10.9915 1.4483 35 1 5.2788 -9.3901 -0.0929 36 1 3.9663 -10.2611 -0.9266 37 1 3.8816 -7.8017 -1.3912 38 1 3.7032 -7.5287 0.3596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712552862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:16 Heat of formation + Delta-G solvation = -69.242166 kcal Electronic energy + Delta-G solvation = -20293.063565 eV Core-core repulsion = 17135.242888 eV Total energy + Delta-G solvation = -3157.820678 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92114 -39.05234 -37.06452 -34.89457 -34.22040 -32.70634 -31.40383 -30.91651 -26.59800 -25.85258 -24.49061 -23.17370 -22.13349 -20.60439 -19.39072 -18.32282 -17.81522 -16.96529 -16.50442 -15.65638 -15.07881 -14.87808 -14.70630 -14.51047 -14.07428 -13.86671 -13.71415 -13.09202 -12.82852 -12.69316 -12.47665 -11.85667 -11.75839 -11.68051 -11.54756 -11.20826 -11.14119 -11.01738 -10.53246 -10.41757 -10.34577 -10.19665 -10.02676 -9.98192 -9.71102 -8.62373 -8.24534 -8.21507 -6.66173 -3.98551 2.46095 3.15419 3.16558 3.22189 3.48921 4.07522 4.24913 4.32997 4.40633 4.58364 4.79713 4.89478 4.98111 5.04515 5.11623 5.20899 5.27333 5.36703 5.47873 5.58543 5.67417 5.73715 5.81194 5.91162 5.94021 5.98369 5.99077 6.06521 6.10242 6.23412 6.34766 6.44360 6.88244 7.31774 7.71896 7.91739 8.34676 8.65589 8.97426 9.33142 9.86344 10.48736 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043449 B = 0.003866 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.276675 B = 7241.792463 C = 7641.725275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.499 5.499 10 C 0.393 3.607 11 O -0.599 6.599 12 C 0.513 3.487 13 O -0.548 6.548 14 N -0.704 5.704 15 C 0.123 3.877 16 H 0.113 0.887 17 C -0.149 4.149 18 C -0.099 4.099 19 H 0.085 0.915 20 C -0.102 4.102 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.110 4.110 24 C -0.107 4.107 25 H 0.081 0.919 26 H 0.280 0.720 27 H 0.405 0.595 28 H 0.410 0.590 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.730 -17.671 0.783 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.133 5.133 10 C 0.178 3.822 11 O -0.487 6.487 12 C 0.298 3.702 13 O -0.425 6.425 14 N -0.358 5.358 15 C 0.017 3.983 16 H 0.131 0.869 17 C -0.188 4.188 18 C -0.118 4.118 19 H 0.104 0.896 20 C -0.140 4.140 21 C -0.154 4.154 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.126 4.126 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.240 0.760 28 H 0.248 0.752 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.473 -17.496 0.786 17.855 hybrid contribution 0.092 0.790 0.009 0.796 sum 3.565 -16.706 0.795 17.100 Atomic orbital electron populations 1.69486 1.06520 1.29335 1.45380 1.25584 0.95623 1.00460 0.95921 0.85723 0.79376 0.79690 0.78780 1.19900 1.20521 1.18899 1.19886 0.93979 0.81912 1.47906 0.86987 1.41571 1.10488 1.04242 1.57047 1.19005 0.87838 0.84290 0.91102 1.90573 1.12910 1.86674 1.58578 1.20733 0.87550 0.86085 0.75854 1.90675 1.14114 1.88149 1.49573 1.45787 1.11006 1.04330 1.74712 1.22682 0.97261 0.81693 0.96628 0.86899 1.23496 1.02622 0.95451 0.97231 1.21451 0.99398 0.94236 0.96697 0.89642 1.20511 0.94841 0.97901 1.00725 1.21133 0.95646 1.00878 0.97778 1.21333 0.99517 0.97040 0.97321 1.21393 0.93310 0.97769 1.02313 1.22671 0.95578 0.95557 0.98803 0.90031 0.90930 0.76001 0.75168 0.89612 0.91154 0.91964 0.92506 0.92102 0.92093 0.91834 0.92128 0.90885 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.45 13.03 55.53 0.72 -22.73 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.17 29.56 -169.99 -5.02 15.15 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.31 -8.51 9.67 -15.14 -0.15 -8.66 16 8 H 0.11 3.17 7.15 -52.49 -0.38 2.80 16 9 N -0.50 -13.52 5.25 -11.59 -0.06 -13.58 16 10 C 0.39 10.05 7.82 -11.87 -0.09 9.96 16 11 O -0.60 -16.18 16.03 5.36 0.09 -16.10 16 12 C 0.51 11.35 7.87 -11.88 -0.09 11.26 16 13 O -0.55 -13.02 16.07 5.42 0.09 -12.94 16 14 N -0.70 -12.29 5.15 -53.31 -0.27 -12.56 16 15 C 0.12 1.73 4.09 -66.78 -0.27 1.46 16 16 H 0.11 1.72 7.46 -51.92 -0.39 1.34 16 17 C -0.15 -1.80 7.05 -26.11 -0.18 -1.99 16 18 C -0.10 -0.97 3.68 -92.04 -0.34 -1.31 16 19 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.10 -0.86 5.48 -28.67 -0.16 -1.02 16 21 C -0.12 -0.99 5.73 -27.64 -0.16 -1.14 16 22 C -0.11 -1.01 5.84 -26.96 -0.16 -1.17 16 23 C -0.11 -1.17 4.64 -26.75 -0.12 -1.29 16 24 C -0.11 -1.17 4.24 -90.14 -0.38 -1.55 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 27 H 0.40 11.04 7.35 -40.82 -0.30 10.74 16 28 H 0.41 6.85 5.75 -40.82 -0.23 6.61 16 29 H 0.09 1.06 7.31 -51.93 -0.38 0.68 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.55 7.84 -51.93 -0.41 0.15 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.79 5.74 -51.93 -0.30 0.49 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -30.24 308.20 -7.34 -37.58 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -5.32 Total: 15.27 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.20 Total: 5.26 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.39 Total: -48.87 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: 0.17 Total: -29.03 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.24 -7.34 -37.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712552862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.658 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds