Wall clock time and date at job start Mon Mar 30 2020 04:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86803 * 119.99714 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99853 * 3 2 1 5 5 H 1.48492 * 109.47096 * 30.00115 * 3 2 1 6 6 H 1.48501 * 109.46810 * 150.00468 * 3 2 1 7 7 C 1.39582 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00388 * 179.97438 * 7 2 1 9 9 N 1.36126 * 119.99936 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99762 * 180.27850 * 9 7 2 11 11 O 1.21503 * 120.00321 * 359.71737 * 10 9 7 12 12 C 1.48832 * 119.99765 * 179.71995 * 10 9 7 13 13 O 1.21443 * 119.99877 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00135 * 179.97438 * 12 10 9 15 15 C 1.46500 * 120.00431 * 180.02562 * 14 12 10 16 16 H 1.09009 * 112.88477 * 23.64725 * 15 14 12 17 17 C 1.53958 * 113.66512 * 252.17482 * 15 14 12 18 18 C 1.53228 * 86.25540 * 218.96251 * 17 15 14 19 19 H 1.08994 * 111.34613 * 274.74313 * 18 17 15 20 20 C 1.50508 * 115.02752 * 147.07896 * 18 17 15 21 21 C 1.51625 * 114.39751 * 290.52373 * 20 18 17 22 22 C 1.52593 * 111.08066 * 313.10041 * 21 20 18 23 23 C 1.52952 * 109.88209 * 63.11710 * 22 21 20 24 24 C 1.52544 * 87.67250 * 26.88361 * 18 17 15 25 25 H 1.09001 * 113.95622 * 218.48690 * 24 18 17 26 26 H 0.96999 * 120.00097 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99691 * 359.97438 * 9 7 2 28 28 H 0.97000 * 120.00112 * 0.02562 * 14 12 10 29 29 H 1.09000 * 113.75092 * 333.30484 * 17 15 14 30 30 H 1.09003 * 113.75233 * 104.62890 * 17 15 14 31 31 H 1.08997 * 108.49459 * 51.80132 * 20 18 17 32 32 H 1.09002 * 108.48948 * 169.41144 * 20 18 17 33 33 H 1.08998 * 109.15962 * 73.51557 * 21 20 18 34 34 H 1.09005 * 109.15381 * 192.68890 * 21 20 18 35 35 H 1.08999 * 109.58099 * 183.50165 * 22 21 20 36 36 H 1.09004 * 109.58111 * 303.89098 * 22 21 20 37 37 H 1.08996 * 110.86615 * 177.42804 * 23 22 21 38 38 H 1.09000 * 108.13123 * 57.30027 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 1.4415 2.6526 0.7000 6 1 3.5417 1.4402 0.7000 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3877 -0.0016 10 6 2.0015 -3.5548 0.0036 11 8 3.2165 -3.5548 0.0040 12 6 1.2573 -4.8438 0.0087 13 8 0.0429 -4.8438 0.0078 14 7 1.9312 -6.0109 0.0133 15 6 1.1988 -7.2797 0.0178 16 1 0.1903 -7.1884 -0.3857 17 6 1.2632 -8.0257 1.3631 18 6 1.3811 -9.3076 0.5321 19 1 0.4001 -9.6853 0.2441 20 6 2.2220 -10.3921 1.1502 21 6 3.7052 -10.0816 1.2020 22 6 4.2010 -9.5461 -0.1380 23 6 3.5059 -8.2218 -0.4582 24 6 1.9989 -8.4591 -0.5749 25 1 1.6872 -8.7466 -1.5791 26 1 -0.4850 0.8400 -0.0004 27 1 0.3575 -2.3877 -0.0016 28 1 2.9012 -6.0110 0.0137 29 1 2.1540 -7.7986 1.9487 30 1 0.3434 -7.9626 1.9446 31 1 1.8692 -10.5660 2.1668 32 1 2.0824 -11.3077 0.5755 33 1 3.8877 -9.3353 1.9751 34 1 4.2526 -10.9915 1.4483 35 1 5.2788 -9.3901 -0.0929 36 1 3.9663 -10.2611 -0.9266 37 1 3.8816 -7.8017 -1.3912 38 1 3.7032 -7.5287 0.3596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712552862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:15 Heat of formation + Delta-G solvation = -89.520424 kcal Electronic energy + Delta-G solvation = -20293.942897 eV Core-core repulsion = 17135.242888 eV Total energy + Delta-G solvation = -3158.700009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.04083 -40.77944 -38.96491 -36.48262 -35.75100 -33.99945 -33.40128 -31.84061 -28.12611 -27.21982 -25.79293 -24.47772 -23.18308 -21.70787 -21.10156 -20.37443 -18.85355 -18.56225 -17.82598 -17.19443 -16.63022 -16.50121 -16.22422 -15.76884 -15.46477 -15.12986 -14.68374 -14.64647 -14.50798 -13.80801 -13.68388 -13.54324 -12.98573 -12.86992 -12.60396 -12.54978 -12.41122 -12.28497 -12.10913 -12.00850 -11.81827 -11.67731 -11.01645 -10.87870 -10.82733 -10.29140 -10.22529 -10.04909 -8.67166 -6.12416 0.58374 1.40599 1.46673 1.55684 1.85403 2.29549 2.35419 3.13691 3.27559 3.39434 3.53398 3.72902 3.81536 4.00468 4.13536 4.23146 4.28905 4.43205 4.53786 4.65712 4.72626 4.81966 4.89040 4.97363 5.08756 5.12623 5.18613 5.23731 5.23930 5.35691 5.39143 5.46343 5.58758 5.61257 5.67872 6.17256 6.38998 6.80386 7.01499 7.26580 7.78319 8.48719 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.043449 B = 0.003866 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.276675 B = 7241.792463 C = 7641.725275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.510 5.510 10 C 0.387 3.613 11 O -0.618 6.618 12 C 0.517 3.483 13 O -0.569 6.569 14 N -0.683 5.683 15 C 0.101 3.899 16 H 0.102 0.898 17 C -0.147 4.147 18 C -0.084 4.084 19 H 0.098 0.902 20 C -0.101 4.101 21 C -0.118 4.118 22 C -0.110 4.110 23 C -0.113 4.113 24 C -0.095 4.095 25 H 0.093 0.907 26 H 0.289 0.711 27 H 0.400 0.600 28 H 0.414 0.586 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.327 -18.942 0.765 19.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.117 0.883 9 N -0.144 5.144 10 C 0.172 3.828 11 O -0.508 6.508 12 C 0.300 3.700 13 O -0.448 6.448 14 N -0.336 5.336 15 C -0.003 4.003 16 H 0.120 0.880 17 C -0.186 4.186 18 C -0.103 4.103 19 H 0.116 0.884 20 C -0.139 4.139 21 C -0.155 4.155 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.114 4.114 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.235 0.765 28 H 0.254 0.746 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.075 -18.818 0.769 19.269 hybrid contribution -0.096 1.093 0.016 1.097 sum 3.979 -17.725 0.785 18.183 Atomic orbital electron populations 1.69552 1.07868 1.30860 1.45074 1.26562 0.96507 1.03512 0.94299 0.84682 0.77996 0.74922 0.79232 1.18893 1.19060 1.18753 1.20001 0.93716 0.83086 1.50845 0.88305 1.41666 1.10220 1.04819 1.57684 1.19665 0.87904 0.85309 0.89899 1.90537 1.13803 1.87317 1.59098 1.20152 0.87089 0.86156 0.76576 1.90662 1.14616 1.88342 1.51203 1.45812 1.11299 1.04217 1.72266 1.23138 0.97142 0.80765 0.99236 0.88036 1.23486 1.02432 0.96453 0.96230 1.21426 1.00268 0.93545 0.95068 0.88401 1.20515 0.94437 0.97707 1.01224 1.21158 0.95909 1.01302 0.97144 1.21316 0.99613 0.95942 0.97916 1.21419 0.93286 0.98770 1.01630 1.22679 0.95346 0.93562 0.99816 0.88886 0.90058 0.76507 0.74646 0.89858 0.91381 0.91331 0.90893 0.93123 0.90498 0.91325 0.91067 0.91189 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.66 13.03 21.76 0.28 -48.38 16 2 C 0.00 -0.24 5.51 85.14 0.47 0.23 16 3 Si 1.01 41.04 29.56 68.60 2.03 43.07 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.35 -19.80 9.67 84.35 0.82 -18.98 16 8 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 9 N -0.51 -28.61 5.25 -308.87 -1.62 -30.23 16 10 C 0.39 20.40 7.82 87.08 0.68 21.08 16 11 O -0.62 -34.26 16.03 -3.73 -0.06 -34.32 16 12 C 0.52 23.39 7.87 87.08 0.69 24.07 16 13 O -0.57 -27.66 16.07 -3.54 -0.06 -27.72 16 14 N -0.68 -24.01 5.15 -440.91 -2.27 -26.28 16 15 C 0.10 2.80 4.09 45.74 0.19 2.99 16 16 H 0.10 3.08 7.46 -2.38 -0.02 3.07 16 17 C -0.15 -3.40 7.05 30.99 0.22 -3.18 16 18 C -0.08 -1.45 3.68 -11.71 -0.04 -1.49 16 19 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 20 C -0.10 -1.39 5.48 29.34 0.16 -1.23 16 21 C -0.12 -1.67 5.73 30.01 0.17 -1.49 16 22 C -0.11 -1.67 5.84 30.44 0.18 -1.49 16 23 C -0.11 -2.24 4.64 30.58 0.14 -2.10 16 24 C -0.09 -1.91 4.24 -10.48 -0.04 -1.95 16 25 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 27 H 0.40 22.71 7.35 -92.71 -0.68 22.03 16 28 H 0.41 13.93 5.75 -92.71 -0.53 13.40 16 29 H 0.08 1.98 7.31 -2.39 -0.02 1.96 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.82 7.84 -2.39 -0.02 0.80 16 34 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.20 5.74 -2.39 -0.01 1.19 16 Total: -1.00 -65.72 308.20 1.80 -63.93 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -0.13 Total: 43.48 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 3.62 Total: 16.45 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -3.61 Total: -104.89 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -0.12 Total: -62.04 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -65.72 1.80 -63.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712552862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.595 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds