Wall clock time and date at job start Mon Mar 30 2020 04:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86804 * 120.00266 * 2 1 4 4 H 1.48496 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46958 * 299.99700 * 3 2 1 6 6 H 1.48494 * 109.46898 * 59.99975 * 3 2 1 7 7 C 1.39590 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99766 * 180.02562 * 7 2 1 9 9 N 1.36116 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00227 * 179.97438 * 9 7 2 11 11 O 1.21502 * 119.99731 * 0.02562 * 10 9 7 12 12 C 1.48835 * 120.00103 * 180.02562 * 10 9 7 13 13 O 1.21441 * 119.99867 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99999 * 180.02562 * 12 10 9 15 15 C 1.46494 * 119.99905 * 180.02562 * 14 12 10 16 16 H 1.09001 * 112.89514 * 336.37869 * 15 14 12 17 17 C 1.53975 * 113.76329 * 107.85422 * 15 14 12 18 18 C 1.53177 * 86.10162 * 87.54870 * 17 15 14 19 19 H 1.09001 * 111.78130 * 273.96038 * 18 17 15 20 20 C 1.51918 * 115.01442 * 144.83568 * 18 17 15 21 21 C 1.53066 * 109.62505 * 306.33610 * 20 18 17 22 22 C 1.52625 * 108.53943 * 297.23963 * 21 20 18 23 23 C 1.51491 * 111.14697 * 64.33655 * 22 21 20 24 24 C 1.51476 * 114.25480 * 312.18489 * 23 22 21 25 25 H 1.08998 * 112.47094 * 257.24078 * 24 23 22 26 26 H 0.97000 * 119.99760 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99823 * 359.97438 * 9 7 2 28 28 H 0.96998 * 119.99579 * 359.97438 * 14 12 10 29 29 H 1.09001 * 113.77082 * 201.84997 * 17 15 14 30 30 H 1.09004 * 113.77204 * 333.13784 * 17 15 14 31 31 H 1.08994 * 109.44819 * 186.28475 * 20 18 17 32 32 H 1.09000 * 109.44214 * 66.38469 * 20 18 17 33 33 H 1.08995 * 109.62437 * 56.96196 * 21 20 18 34 34 H 1.08998 * 109.62086 * 177.52513 * 21 20 18 35 35 H 1.09005 * 109.14204 * 184.75904 * 22 21 20 36 36 H 1.08994 * 109.14579 * 303.95975 * 22 21 20 37 37 H 1.08992 * 108.52509 * 73.42081 * 23 22 21 38 38 H 1.08994 * 108.52491 * 190.94883 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.7041 1.3463 0.0006 5 1 1.8855 2.3964 -1.2125 6 1 1.8855 2.3964 1.2125 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3274 -2.3877 0.0005 10 6 2.0012 -3.5549 0.0005 11 8 3.2162 -3.5549 0.0010 12 6 1.2569 -4.8438 0.0000 13 8 0.0425 -4.8437 0.0000 14 7 1.9308 -6.0111 0.0005 15 6 1.1982 -7.2797 -0.0006 16 1 0.1890 -7.1870 0.4005 17 6 1.2637 -8.0328 -1.3421 18 6 2.5542 -8.6609 -0.8069 19 1 3.4225 -8.0326 -1.0057 20 6 2.7883 -10.1026 -1.2249 21 6 1.5652 -10.9482 -0.8616 22 6 1.3956 -10.9298 0.6551 23 6 1.0865 -9.5330 1.1535 24 6 1.9978 -8.4582 0.5978 25 1 2.7543 -8.1413 1.3157 26 1 -0.4850 0.8401 -0.0004 27 1 0.3574 -2.3876 0.0005 28 1 2.9008 -6.0111 0.0009 29 1 0.4533 -8.7476 -1.4846 30 1 1.4139 -7.3827 -2.2041 31 1 3.6653 -10.4923 -0.7083 32 1 2.9528 -10.1461 -2.3015 33 1 0.6770 -10.5293 -1.3345 34 1 1.7150 -11.9732 -1.2009 35 1 0.5790 -11.5968 0.9315 36 1 2.3163 -11.2795 1.1220 37 1 0.0589 -9.2889 0.8846 38 1 1.1671 -9.5275 2.2404 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712560083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:21 Heat of formation + Delta-G solvation = -69.225129 kcal Electronic energy + Delta-G solvation = -20153.409494 eV Core-core repulsion = 16995.589555 eV Total energy + Delta-G solvation = -3157.819939 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97381 -39.10225 -37.10322 -35.04436 -34.21067 -32.14974 -31.38860 -31.23271 -26.74182 -25.89106 -24.38754 -22.87332 -22.54427 -20.69155 -19.40622 -18.34727 -17.82920 -16.89833 -16.45727 -15.61387 -15.15439 -14.99207 -14.64864 -14.42117 -14.14896 -13.89751 -13.68607 -13.07916 -12.88690 -12.69645 -12.60051 -12.20257 -11.79009 -11.72967 -11.48201 -11.22450 -10.98685 -10.95155 -10.52142 -10.41355 -10.36841 -10.25199 -9.93466 -9.89030 -9.73774 -8.67971 -8.27742 -8.23090 -6.67716 -3.99907 2.43072 3.13536 3.15695 3.22169 3.38558 4.05441 4.23542 4.31116 4.41714 4.59979 4.81384 4.87014 4.98822 5.00761 5.17872 5.21453 5.24627 5.28231 5.47461 5.53909 5.67075 5.78692 5.83368 5.88057 5.95822 5.97954 6.00045 6.06040 6.09298 6.22949 6.35382 6.36886 6.88005 7.30624 7.69482 7.88725 8.32764 8.62913 8.95819 9.31344 9.84516 10.47219 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.053741 B = 0.003578 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.890800 B = 7824.389674 C = 8016.070584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.499 5.499 10 C 0.394 3.606 11 O -0.598 6.598 12 C 0.516 3.484 13 O -0.545 6.545 14 N -0.697 5.697 15 C 0.123 3.877 16 H 0.101 0.899 17 C -0.152 4.152 18 C -0.102 4.102 19 H 0.086 0.914 20 C -0.107 4.107 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.098 4.098 24 C -0.109 4.109 25 H 0.078 0.922 26 H 0.280 0.720 27 H 0.405 0.595 28 H 0.409 0.591 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.920 -18.319 -0.417 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.131 0.869 9 N -0.133 5.133 10 C 0.178 3.822 11 O -0.487 6.487 12 C 0.301 3.699 13 O -0.422 6.422 14 N -0.350 5.350 15 C 0.017 3.983 16 H 0.119 0.881 17 C -0.190 4.190 18 C -0.120 4.120 19 H 0.105 0.895 20 C -0.145 4.145 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.136 4.136 24 C -0.128 4.128 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.240 0.760 28 H 0.245 0.755 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.663 -18.137 -0.402 18.217 hybrid contribution 0.235 0.838 -0.012 0.870 sum 1.898 -17.299 -0.414 17.408 Atomic orbital electron populations 1.69492 1.06532 1.29269 1.45337 1.25596 0.95633 1.00492 0.95905 0.85664 0.79880 0.79987 0.78071 1.18699 1.20273 1.20278 1.19937 0.94012 0.81868 1.47805 0.86914 1.41570 1.10502 1.04230 1.56980 1.18948 0.87812 0.84207 0.91228 1.90579 1.12877 1.86620 1.58586 1.20711 0.87520 0.85863 0.75834 1.90682 1.14084 1.88046 1.49392 1.45343 1.10753 1.03993 1.74902 1.22213 0.96829 0.82481 0.96779 0.88150 1.23477 0.98110 0.99360 0.98065 1.21961 0.98011 0.96506 0.95569 0.89534 1.21172 0.97970 0.94512 1.00799 1.21515 0.98834 0.99492 0.96059 1.21092 1.01561 0.96406 0.96030 1.20630 0.99155 0.93544 1.00225 1.22272 0.98329 0.95460 0.96729 0.90309 0.90954 0.75992 0.75451 0.89066 0.91085 0.91941 0.91919 0.91500 0.92132 0.92061 0.92249 0.91797 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.35 13.03 55.53 0.72 -22.62 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 3 Si 0.94 20.11 29.56 -169.99 -5.02 15.09 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.31 -8.47 9.67 -15.15 -0.15 -8.61 16 8 H 0.11 3.19 7.15 -52.49 -0.38 2.82 16 9 N -0.50 -13.45 5.25 -11.59 -0.06 -13.51 16 10 C 0.39 10.02 7.82 -11.87 -0.09 9.92 16 11 O -0.60 -16.13 16.03 5.36 0.09 -16.04 16 12 C 0.52 11.36 7.87 -11.87 -0.09 11.27 16 13 O -0.55 -12.94 16.07 5.42 0.09 -12.85 16 14 N -0.70 -12.13 5.24 -53.29 -0.28 -12.41 16 15 C 0.12 1.75 3.76 -66.75 -0.25 1.49 16 16 H 0.10 1.56 7.06 -51.93 -0.37 1.20 16 17 C -0.15 -1.84 7.08 -26.13 -0.18 -2.02 16 18 C -0.10 -1.08 3.69 -91.46 -0.34 -1.42 16 19 H 0.09 0.96 7.88 -51.93 -0.41 0.55 16 20 C -0.11 -0.94 5.78 -27.25 -0.16 -1.09 16 21 C -0.12 -0.97 5.74 -26.89 -0.15 -1.13 16 22 C -0.11 -0.90 5.83 -27.69 -0.16 -1.07 16 23 C -0.10 -0.92 5.37 -28.26 -0.15 -1.07 16 24 C -0.11 -1.20 4.00 -90.90 -0.36 -1.57 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 27 H 0.40 11.00 7.35 -40.82 -0.30 10.70 16 28 H 0.41 6.76 7.87 -40.82 -0.32 6.44 16 29 H 0.09 0.98 6.13 -51.93 -0.32 0.66 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.56 6.22 -51.93 -0.32 0.23 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.62 7.40 -51.93 -0.38 0.23 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -30.14 309.09 -7.31 -37.45 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -5.31 Total: 14.82 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -2.19 Total: 5.41 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.38 Total: -48.55 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: 0.17 Total: -28.89 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.14 -7.31 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712560083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.770 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds