Wall clock time and date at job start Mon Mar 30 2020 04:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31011 * 1 3 3 Si 1.86804 * 120.00266 * 2 1 4 4 H 1.48496 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46958 * 299.99700 * 3 2 1 6 6 H 1.48494 * 109.46898 * 59.99975 * 3 2 1 7 7 C 1.39590 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99766 * 180.02562 * 7 2 1 9 9 N 1.36116 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00227 * 179.97438 * 9 7 2 11 11 O 1.21502 * 119.99731 * 0.02562 * 10 9 7 12 12 C 1.48835 * 120.00103 * 180.02562 * 10 9 7 13 13 O 1.21441 * 119.99867 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99999 * 180.02562 * 12 10 9 15 15 C 1.46494 * 119.99905 * 180.02562 * 14 12 10 16 16 H 1.09001 * 112.89514 * 336.37869 * 15 14 12 17 17 C 1.53975 * 113.76329 * 107.85422 * 15 14 12 18 18 C 1.53177 * 86.10162 * 87.54870 * 17 15 14 19 19 H 1.09001 * 111.78130 * 273.96038 * 18 17 15 20 20 C 1.51918 * 115.01442 * 144.83568 * 18 17 15 21 21 C 1.53066 * 109.62505 * 306.33610 * 20 18 17 22 22 C 1.52625 * 108.53943 * 297.23963 * 21 20 18 23 23 C 1.51491 * 111.14697 * 64.33655 * 22 21 20 24 24 C 1.51476 * 114.25480 * 312.18489 * 23 22 21 25 25 H 1.08998 * 112.47094 * 257.24078 * 24 23 22 26 26 H 0.97000 * 119.99760 * 0.02562 * 1 2 3 27 27 H 0.97003 * 119.99823 * 359.97438 * 9 7 2 28 28 H 0.96998 * 119.99579 * 359.97438 * 14 12 10 29 29 H 1.09001 * 113.77082 * 201.84997 * 17 15 14 30 30 H 1.09004 * 113.77204 * 333.13784 * 17 15 14 31 31 H 1.08994 * 109.44819 * 186.28475 * 20 18 17 32 32 H 1.09000 * 109.44214 * 66.38469 * 20 18 17 33 33 H 1.08995 * 109.62437 * 56.96196 * 21 20 18 34 34 H 1.08998 * 109.62086 * 177.52513 * 21 20 18 35 35 H 1.09005 * 109.14204 * 184.75904 * 22 21 20 36 36 H 1.08994 * 109.14579 * 303.95975 * 22 21 20 37 37 H 1.08992 * 108.52509 * 73.42081 * 23 22 21 38 38 H 1.08994 * 108.52491 * 190.94883 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.7041 1.3463 0.0006 5 1 1.8855 2.3964 -1.2125 6 1 1.8855 2.3964 1.2125 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3274 -2.3877 0.0005 10 6 2.0012 -3.5549 0.0005 11 8 3.2162 -3.5549 0.0010 12 6 1.2569 -4.8438 0.0000 13 8 0.0425 -4.8437 0.0000 14 7 1.9308 -6.0111 0.0005 15 6 1.1982 -7.2797 -0.0006 16 1 0.1890 -7.1870 0.4005 17 6 1.2637 -8.0328 -1.3421 18 6 2.5542 -8.6609 -0.8069 19 1 3.4225 -8.0326 -1.0057 20 6 2.7883 -10.1026 -1.2249 21 6 1.5652 -10.9482 -0.8616 22 6 1.3956 -10.9298 0.6551 23 6 1.0865 -9.5330 1.1535 24 6 1.9978 -8.4582 0.5978 25 1 2.7543 -8.1413 1.3157 26 1 -0.4850 0.8401 -0.0004 27 1 0.3574 -2.3876 0.0005 28 1 2.9008 -6.0111 0.0009 29 1 0.4533 -8.7476 -1.4846 30 1 1.4139 -7.3827 -2.2041 31 1 3.6653 -10.4923 -0.7083 32 1 2.9528 -10.1461 -2.3015 33 1 0.6770 -10.5293 -1.3345 34 1 1.7150 -11.9732 -1.2009 35 1 0.5790 -11.5968 0.9315 36 1 2.3163 -11.2795 1.1220 37 1 0.0589 -9.2889 0.8846 38 1 1.1671 -9.5275 2.2404 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712560083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:21 Heat of formation + Delta-G solvation = -89.632675 kcal Electronic energy + Delta-G solvation = -20154.294432 eV Core-core repulsion = 16995.589555 eV Total energy + Delta-G solvation = -3158.704877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.09185 -40.82657 -38.99780 -36.54140 -35.87124 -33.64944 -33.18784 -32.06447 -28.14792 -27.38425 -25.72504 -24.24961 -23.39927 -21.81493 -21.11661 -20.39370 -18.98017 -18.40913 -17.82802 -17.16439 -16.61398 -16.55541 -16.14270 -15.76632 -15.56024 -15.12012 -14.75877 -14.65459 -14.40114 -13.84628 -13.71019 -13.59339 -13.11691 -12.98630 -12.65232 -12.59016 -12.32995 -12.27132 -12.08866 -11.90107 -11.69607 -11.68761 -11.04414 -10.81860 -10.74988 -10.29985 -10.27442 -10.09160 -8.68087 -6.13114 0.55850 1.40406 1.45076 1.56337 1.77517 2.28024 2.33600 3.12689 3.22926 3.34346 3.53668 3.77527 3.82617 3.98919 4.15435 4.22285 4.41569 4.43173 4.51778 4.64164 4.70665 4.84383 4.87256 4.96587 5.12489 5.15033 5.19730 5.23570 5.25297 5.31107 5.41220 5.49811 5.56045 5.64608 5.68228 6.14421 6.36668 6.79279 6.99500 7.25211 7.77106 8.47998 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.053741 B = 0.003578 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.890800 B = 7824.389674 C = 8016.070584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.509 5.509 10 C 0.388 3.612 11 O -0.617 6.617 12 C 0.521 3.479 13 O -0.566 6.566 14 N -0.677 5.677 15 C 0.102 3.898 16 H 0.086 0.914 17 C -0.145 4.145 18 C -0.096 4.096 19 H 0.080 0.920 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.110 4.110 23 C -0.098 4.098 24 C -0.094 4.094 25 H 0.077 0.923 26 H 0.289 0.711 27 H 0.401 0.599 28 H 0.415 0.585 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.426 -19.551 -0.442 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.475 4.475 8 H 0.117 0.883 9 N -0.143 5.143 10 C 0.173 3.827 11 O -0.507 6.507 12 C 0.305 3.695 13 O -0.445 6.445 14 N -0.328 5.328 15 C -0.003 4.003 16 H 0.104 0.896 17 C -0.184 4.184 18 C -0.114 4.114 19 H 0.098 0.902 20 C -0.142 4.142 21 C -0.158 4.158 22 C -0.148 4.148 23 C -0.136 4.136 24 C -0.113 4.113 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.235 0.765 28 H 0.252 0.748 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.174 -19.417 -0.429 19.543 hybrid contribution 0.060 1.127 -0.001 1.129 sum 2.234 -18.290 -0.430 18.431 Atomic orbital electron populations 1.69555 1.07863 1.30827 1.45021 1.26571 0.96519 1.03527 0.94298 0.84623 0.78261 0.75143 0.78772 1.18735 1.19002 1.19007 1.20036 0.93713 0.83041 1.50750 0.88292 1.41661 1.10241 1.04798 1.57598 1.19582 0.87862 0.85201 0.90035 1.90543 1.13767 1.87262 1.59115 1.20100 0.87028 0.85933 0.76485 1.90671 1.14616 1.88253 1.50996 1.45289 1.11057 1.03916 1.72543 1.22612 0.96460 0.81793 0.99397 0.89556 1.23477 0.99814 0.99074 0.95988 1.21923 0.96827 0.97892 0.94749 0.90181 1.21171 0.98805 0.92963 1.01239 1.21530 0.98156 1.00166 0.95997 1.21083 1.02373 0.95284 0.96033 1.20663 0.98419 0.93967 1.00569 1.22262 0.97831 0.94123 0.97070 0.90412 0.90037 0.76482 0.74815 0.87294 0.92603 0.91057 0.91406 0.91871 0.90592 0.90830 0.91635 0.92131 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.41 13.03 21.77 0.28 -48.13 16 2 C 0.00 -0.25 5.51 85.14 0.47 0.22 16 3 Si 1.01 40.93 29.56 68.60 2.03 42.95 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.35 -19.66 9.67 84.36 0.82 -18.84 16 8 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 9 N -0.51 -28.42 5.25 -308.87 -1.62 -30.04 16 10 C 0.39 20.34 7.82 87.08 0.68 21.02 16 11 O -0.62 -34.07 16.03 -3.72 -0.06 -34.13 16 12 C 0.52 23.46 7.87 87.08 0.69 24.14 16 13 O -0.57 -27.50 16.07 -3.53 -0.06 -27.56 16 14 N -0.68 -23.69 5.24 -440.83 -2.31 -26.00 16 15 C 0.10 2.86 3.76 45.76 0.17 3.03 16 16 H 0.09 2.70 7.06 -2.39 -0.02 2.68 16 17 C -0.15 -3.37 7.08 30.98 0.22 -3.15 16 18 C -0.10 -1.86 3.69 -11.34 -0.04 -1.90 16 19 H 0.08 1.67 7.88 -2.39 -0.02 1.66 16 20 C -0.10 -1.54 5.78 30.26 0.17 -1.37 16 21 C -0.12 -1.56 5.74 30.49 0.17 -1.39 16 22 C -0.11 -1.43 5.83 29.98 0.17 -1.25 16 23 C -0.10 -1.65 5.37 29.60 0.16 -1.49 16 24 C -0.09 -1.94 4.00 -10.97 -0.04 -1.98 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 27 H 0.40 22.60 7.35 -92.71 -0.68 21.92 16 28 H 0.41 13.71 7.87 -92.71 -0.73 12.98 16 29 H 0.11 2.16 6.13 -2.39 -0.01 2.14 16 30 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.87 6.22 -2.39 -0.01 0.86 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 1.07 7.40 -2.39 -0.02 1.05 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -65.39 309.09 1.59 -63.80 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -0.32 Total: 42.07 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 3.64 Total: 17.03 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -3.65 Total: -104.17 kcal Atomic # 8 Polarization: -61.57 SS G_CDS: -0.12 Total: -61.69 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -65.39 1.59 -63.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712560083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.830 kcal (2) G-P(sol) polarization free energy of solvation -65.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds