Wall clock time and date at job start Mon Mar 30 2020 04:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99743 * 2 1 4 4 H 1.48501 * 109.47262 * 270.00013 * 3 2 1 5 5 H 1.48497 * 109.47499 * 30.00263 * 3 2 1 6 6 H 1.48507 * 109.47234 * 150.00149 * 3 2 1 7 7 C 1.37874 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00108 * 179.14416 * 7 2 1 9 9 C 1.50708 * 119.99753 * 359.42221 * 7 2 1 10 10 C 1.52991 * 115.54985 * 35.39632 * 9 7 2 11 11 N 1.46897 * 109.47610 * 54.55559 * 10 9 7 12 12 C 1.46901 * 111.00264 * 64.71498 * 11 10 9 13 13 C 1.52992 * 109.47304 * 190.00527 * 12 11 10 14 14 N 1.46905 * 109.47159 * 180.02562 * 13 12 11 15 15 C 1.46899 * 111.00378 * 188.67382 * 11 10 9 16 16 C 1.52998 * 109.47404 * 77.86293 * 15 11 10 17 17 F 1.39903 * 109.46879 * 56.39849 * 16 15 11 18 18 F 1.39898 * 109.46998 * 176.40011 * 16 15 11 19 19 F 1.39900 * 109.47257 * 296.40472 * 16 15 11 20 20 C 1.53005 * 117.49507 * 249.72030 * 9 7 2 21 21 C 1.53002 * 117.49609 * 181.06372 * 9 7 2 22 22 H 0.96996 * 120.00161 * 4.79346 * 1 2 3 23 23 H 1.09000 * 109.46711 * 174.55310 * 10 9 7 24 24 H 1.08997 * 109.46993 * 294.54971 * 10 9 7 25 25 H 1.09003 * 109.47160 * 310.00692 * 12 11 10 26 26 H 1.09004 * 109.46771 * 70.00105 * 12 11 10 27 27 H 1.09007 * 109.46951 * 299.99702 * 13 12 11 28 28 H 1.08994 * 109.47612 * 60.00055 * 13 12 11 29 29 H 1.00903 * 110.99715 * 179.97438 * 14 13 12 30 30 H 1.00899 * 110.99222 * 303.94875 * 14 13 12 31 31 H 1.08995 * 109.47308 * 197.86950 * 15 11 10 32 32 H 1.09010 * 109.46746 * 317.86573 * 15 11 10 33 33 H 1.09002 * 117.49938 * 0.02562 * 20 9 7 34 34 H 1.09000 * 117.49170 * 145.02146 * 20 9 7 35 35 H 1.08991 * 117.50225 * 214.97893 * 21 9 7 36 36 H 1.09008 * 117.49719 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 -0.0134 9 6 1.2511 -2.4991 0.0143 10 6 -0.0602 -2.5123 -0.7738 11 7 0.1939 -2.0808 -2.1547 12 6 1.0630 -3.0369 -2.8536 13 6 1.5071 -2.4397 -4.1903 14 7 2.3758 -3.3962 -4.8895 15 6 -1.0654 -1.8830 -2.8848 16 6 -1.6881 -0.5469 -2.4751 17 9 -0.7714 0.4847 -2.7050 18 9 -2.8441 -0.3203 -3.2297 19 9 -2.0179 -0.5832 -1.1160 20 6 1.3164 -3.3391 1.2915 21 6 2.0732 -3.7892 0.0394 22 1 -0.4850 0.8371 -0.0702 23 1 -0.4711 -3.5219 -0.7784 24 1 -0.7722 -1.8325 -0.3058 25 1 1.9394 -3.2468 -2.2404 26 1 0.5151 -3.9620 -3.0330 27 1 0.6307 -2.2299 -4.8036 28 1 2.0550 -1.5147 -4.0110 29 1 2.6823 -3.0249 -5.7762 30 1 3.1630 -3.6567 -4.3146 31 1 -0.8672 -1.8782 -3.9565 32 1 -1.7546 -2.6933 -2.6464 33 1 1.9040 -2.9475 2.1219 34 1 0.4251 -3.9013 1.5701 35 1 1.6797 -4.6475 -0.5051 36 1 3.1591 -3.6940 0.0455 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713337873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:45 Heat of formation + Delta-G solvation = -105.044465 kcal Electronic energy + Delta-G solvation = -22633.947345 eV Core-core repulsion = 18932.717422 eV Total energy + Delta-G solvation = -3701.229922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.07777 -46.68277 -46.36872 -37.98194 -35.62058 -33.67559 -31.95674 -28.88617 -27.36310 -25.37910 -23.62235 -22.40114 -21.13760 -20.32333 -18.94351 -17.57898 -17.44219 -16.70540 -16.19407 -15.57735 -14.80589 -14.59632 -14.30157 -13.84045 -13.56702 -13.47561 -13.31118 -13.13760 -12.88478 -12.62749 -12.52658 -12.43336 -12.18739 -11.71503 -11.34261 -11.03245 -10.87381 -10.79421 -10.52068 -10.42083 -10.26861 -9.86251 -9.35872 -8.83775 -8.56388 -8.49519 -8.02307 -7.43752 -5.77763 -3.88012 3.39137 3.46595 3.47447 3.60846 4.33050 4.53129 4.75486 4.83745 5.02035 5.17108 5.32818 5.50355 5.66614 5.71373 5.77973 5.81993 6.07878 6.13238 6.27925 6.43313 6.50628 6.57299 6.66571 6.73658 6.94409 7.12952 7.28795 7.32618 7.55456 7.63140 7.90941 8.03842 8.15956 8.56091 9.05137 9.73722 11.18372 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.011948 C = 0.008962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.043711 B = 2343.022167 C = 3123.473570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.091 3.909 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.480 4.480 8 H 0.051 0.949 9 C 0.069 3.931 10 C 0.085 3.915 11 N -0.486 5.486 12 C 0.061 3.939 13 C 0.060 3.940 14 N -0.853 5.853 15 C 0.010 3.990 16 C 0.460 3.540 17 F -0.172 7.172 18 F -0.211 7.211 19 F -0.151 7.151 20 C -0.207 4.207 21 C -0.221 4.221 22 H 0.259 0.741 23 H -0.015 1.015 24 H 0.143 0.857 25 H 0.094 0.906 26 H 0.024 0.976 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.337 0.663 30 H 0.340 0.660 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 -3.670 -6.999 8.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.113 4.113 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.517 4.517 8 H 0.069 0.931 9 C 0.068 3.932 10 C -0.042 4.042 11 N -0.210 5.210 12 C -0.067 4.067 13 C -0.070 4.070 14 N -0.382 5.382 15 C -0.121 4.121 16 C 0.405 3.595 17 F -0.154 7.154 18 F -0.193 7.193 19 F -0.132 7.132 20 C -0.246 4.246 21 C -0.258 4.258 22 H 0.070 0.930 23 H 0.003 0.997 24 H 0.160 0.840 25 H 0.112 0.888 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.396 -3.516 -6.891 8.099 hybrid contribution 0.772 0.966 0.052 1.238 sum -1.624 -2.550 -6.839 7.478 Atomic orbital electron populations 1.69813 1.05371 1.26113 1.48584 1.24732 0.94746 0.98129 0.93699 0.86713 0.79650 0.84293 0.77919 1.20781 1.21534 1.20507 1.20205 0.91663 0.88480 1.51312 0.93052 1.18906 0.92536 0.89206 0.92514 1.22371 1.00171 0.95658 0.85953 1.61467 1.09844 1.47326 1.02318 1.22076 0.98428 0.92140 0.94076 1.21837 0.96571 0.93845 0.94773 1.58723 1.25135 1.46278 1.08112 1.23100 0.95243 0.92784 1.00945 1.20351 0.75171 0.88207 0.75756 1.93154 1.66373 1.61654 1.94197 1.93090 1.53055 1.95840 1.77283 1.93202 1.92229 1.96442 1.31332 1.22996 1.00953 1.07387 0.93240 1.22982 0.97938 1.01082 1.03843 0.93002 0.99664 0.83958 0.88778 0.95770 0.92021 0.93986 0.85158 0.84754 0.88309 0.92007 0.90443 0.91990 0.91870 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.47 7.28 55.43 0.40 -22.06 16 2 C 0.09 2.38 5.30 -17.82 -0.09 2.29 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.48 -12.50 8.75 -34.44 -0.30 -12.80 16 8 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 9 C 0.07 1.62 1.44 -155.66 -0.22 1.40 16 10 C 0.08 1.88 3.70 -3.83 -0.01 1.87 16 11 N -0.49 -9.80 3.81 -234.64 -0.89 -10.70 16 12 C 0.06 1.09 4.99 -3.83 -0.02 1.07 16 13 C 0.06 0.95 6.76 -3.83 -0.03 0.92 16 14 N -0.85 -11.19 9.62 -10.37 -0.10 -11.29 16 15 C 0.01 0.18 4.97 -3.83 -0.02 0.16 16 16 C 0.46 8.96 3.06 37.16 0.11 9.08 16 17 F -0.17 -3.75 16.51 2.25 0.04 -3.72 16 18 F -0.21 -3.73 17.32 2.25 0.04 -3.69 16 19 F -0.15 -3.28 12.02 2.25 0.03 -3.25 16 20 C -0.21 -4.58 9.96 -26.69 -0.27 -4.84 16 21 C -0.22 -4.62 8.08 -26.69 -0.22 -4.84 16 22 H 0.26 6.78 7.88 -40.82 -0.32 6.46 16 23 H -0.01 -0.31 8.08 -51.93 -0.42 -0.73 16 24 H 0.14 3.49 3.66 -51.93 -0.19 3.30 16 25 H 0.09 1.83 5.48 -51.93 -0.28 1.54 16 26 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 27 H 0.06 0.92 6.24 -51.92 -0.32 0.60 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.34 3.68 9.08 -39.29 -0.36 3.33 16 30 H 0.34 4.26 8.99 -39.29 -0.35 3.90 16 31 H 0.10 1.52 5.85 -51.93 -0.30 1.21 16 32 H 0.06 1.00 7.97 -51.92 -0.41 0.59 16 33 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 36 H 0.07 1.51 8.14 -51.92 -0.42 1.09 16 LS Contribution 294.24 15.07 4.43 4.43 Total: -1.00 -26.70 294.24 -6.85 -33.54 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.71 Total: 6.21 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.07 Total: -5.70 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.59 Total: -44.05 kcal Atomic # 9 Polarization: -10.76 SS G_CDS: 0.10 Total: -10.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.70 -6.85 -33.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713337873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.501 kcal (2) G-P(sol) polarization free energy of solvation -26.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds